NONHSAT003247
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003247 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5763 nt |
Genomic location |
chr1-:52889075..52900342 |
Exon number |
2 |
Exons |
52889075..52891179,52896685..52900342 |
Genome context |
|
Sequence |
000001 agactgggtt tcaccatatt ggtcgggcta gtcttgaact cctgacctca ggtgatccac ctgccttggc tccccacagt 000080
000081 gctgggatta caggtgtgag ccattgcgcc cagccCAGAC TCATAAGTTT AATATTGTTT GTTGAGTTGC TCTTAACCTT 000160 000161 TGTGTAAATC TATATTCACC TTGTACTTCT TAATTAATAA TGACTCTAAA TAACACTCTA AATCTgacat aatattcagt 000240 000241 gctttacact tagcaaattt aatccttgga gtggccatgt gaagtggtag gtattagtat catcaaattt tacaaattgg 000320 000321 gaaactgaga ataagagagT ATAAAAATCA AACCGAAGTC TTTCTAGCAT CAAATCCATT AACCGTTTAA CATGCTAAAT 000400 000401 CTAATGTGAT TTGTGTTTTA GAAAAAACAT TCAAGTATTT GAAGAGTATT AGGGAGAATC TTTGGAAAAC ATTTAGGAAA 000480 000481 TTTTCCACCC TCACCTCAAA CACTTGAATA CCTATTATGT GCTTGATACT TTCATAAACA ACAATAATCA CATTTAATGT 000560 000561 AGTTAACATT TGTTGAGTGT AAACTATGTG CTGTACATGC ATTCATTCTT TGTGATTATA AAATATTTCA AAAGTACAGA 000640 000641 AAAGTATAGA AAATAAATCT CTATGTATCA TTACCAGGCT TTAACAGTTT TTAACATTGT TATTTTAGCT TTATTAAAAA 000720 000721 ATCACCCTca gttgaacacc ctgtacattc ttctttgatc ccattcctat cttaaaagct tcctaccatc cttcccttgc 000800 000801 tacagaaatg tatctgctat cttgaacttg gtggttatat gttccacatg catTGTtcag ttaatcttct caaaaacctg 000880 000881 aggcaaattc tgattatatt ttataggtaa agaaaccgag gtttcagttt cttgcctgag gtcaatagac acttggaatc 000960 000961 agaacgcgaa ccctcaggct ctctgtcagc aaaacttatg ctctaaccac ttttctatgc tgccctaatt ttcattttat 001040 001041 gctactagtc ctcacttttc tctcacccgt gctttcggaa agagtctgtc taatggacat tgctattctg atgtctaaca 001120 001121 aagcacgtca acatgcctaa aatatagtta atctttcctt tcaaccccca ggacttgcct cttcctcctg tgttttatat 001200 001201 ctcgttgaat gatcccattt tctatctagt ttccaaaact tttccctctc cttcaacctc tatgttcagt cactaagtcc 001280 001281 tgttgtttct gccttaaaaa aagctaggtg tttgcctcac tcctgtaatc ccagcacttt aggaggctga ggtgggtgga 001360 001361 tcacctgagg tcgggagttt gagaccagcc tgaccaacat ggtaaaaccc catctctgct aaaactacaa aaaattagct 001440 001441 ggatgtggtg gcagggaacc tgtcatccca gctagttggg agactgaggc aggagaatca ctcgaaccca ggaggcggag 001520 001521 attgcaatgt gccgagattg caccaccgca ctccagcgtg ggcaacacag cgagactgtc tcaaaaaaaa aaaagtatct 001600 001601 cacagccatt tgcttccctc tatccctgtt tgtgtttcct tagcctaggc tactatcatc tcctaatcag tctcaacagc 001680 001681 cttttagcag tctcctaatc agtctcaaca gccttttaat ttttacttat ctatttattc attcattttt gagacagcgt 001760 001761 cttgctctgt tgcccaggct ggagtgcagt ggcacaatca tggctcactg cagtcttgac ctcccaggct cgggtgattc 001840 001841 tcccatgtca gcctccagag tagctgggac tccaggcatg caccaccaca cttggctaat ttttgtattt cttgtaaaga 001920 001921 tgggatttcg acatgttgcc caggcaggtc tcaaactcct gagctcaagt gatctgcctg cctcagcctt tgaaagtgct 002000 002001 aggattacag tcttgagcca ctgttcctgt ctctcatcag cctttaaaaa aattctctat tttattctta ttaaaccagg 002080 002081 ataatctttc taaagttcag attgatcatg ttccatacct gtttaaaacc cttcagtggt ttaccactgc atttaggata 002160 002161 tagtctaaat tacaaggctt ataagacact tcattgtctt gcccctattt agctcttcag cctcggccat tcccctgcca 002240 002241 ttatatatac tccagtaata ttaaacttct ttcagattcc aattacttta aaaagccatg tgttttcata cctctagacc 002320 002321 ttcaatcata ttgaacactc ttcctctccc cttatctctc ccttcttgta tcagactgat ttctgtttac cctgagtctc 002400 002401 agctaaaaga tcactttttc taggaagctt tccctgattt ctcttctctc cttctcccaa agtgacttta ggtgttcctg 002480 002481 ctctgggatt tcattatgta gttgaccctt gaacaaaaca ggtttgaact gcgtgagtct acttatacat gaattttttc 002560 002561 caacagattg tggttggaaa gtacagtatt cccaggatgc aaaacccaag tattcagaga tccaactttt tgtatatatg 002640 002641 ggttctgtag agctgactgt gggacttgag tacaggattg tgggggtcct ggaaccaatc ccctgcatat cctgagggac 002720 002721 agctgtacac tgtacattct ttatcatagt actcattata cttattatga ttgcttatgt aatctttgtc tgctcccttc 002800 002801 cttatccccc ttaaacgttg agctccatga gggcatacat gttggtatta catttttatt acctagaaca atacttagta 002880 002881 cataattgac acaataaata cttgttgagg gactgaatGA AAGTGACTAT GAGATATTTA GATGGAAGTT TTGAGTTTGC 002960 002961 AATAGGAAGT ATGTGTTCTG CACGATGGGA ACCATGTCTG GGCTCTCGTT TCTTTGGACA ATAAAACGAT TTGTGAGGCA 003040 003041 ATACCTACTT GAAAAGGGGG TTTGAGTACC TTGGGAAAAA CTAATTATTT GTTATGATAT ACATCATAGA GTTCTGtttt 003120 003121 ataaagtttt taattttgta ttttatctct acttttataa aattaagatg tttataaatt aattaaaaaa aatttttttt 003200 003201 ttGTCTGCAG TCTGAATCAC CATCTTATTC TCCTCAGCCT CAGCCATTTC CACAGAACTC TTCCCAGTCA GCTGCTATTA 003280 003281 CTCAGCCTTC ATCTCAGCCA GGATCCCAAC CTAAGCTTGG CCCACCTCAG CAGGGAGCCC AACCTCCCCA TCAGGTCCAG 003360 003361 ATGCCACTGT ATAACTTTCC CCAGTCACCA CCAGCTCAGT ATTCTCCCAT GCACAATATG GGATTGTTGC CAATGCACCC 003440 003441 TCTCCAGATC CCTGCCCCGT CCTGGCCCAT CCATGGCCCA GTGATCCACT CTGCACCAGG CAGTGCCCCC AGCAATATTG 003520 003521 GCCTAAATGA TCCCAGCATC ATCTTTGCAC AGCCTGCTGC CAGACCTGTG GCAATCCCTA ACACGTCTCA CGATGGACAC 003600 003601 TGGCCCCGTA CTGTGGCTCC AAATTCCCTG GTAAACAGTG GTGCAGTGGG GAATTCAGAG CCAGGCTTTC GAGGACTGAC 003680 003681 TCCTCCAATT CCTTGGGAAC ATGCACCGCG TCCCCATTTC CCCCTTGTCC CAGCTTCGTG GCCTTATGGT TTGCATCAAA 003760 003761 ACTTCATGCA TCAGGGAAAT GCCCGATTCC AGCCCAACAA ACCTTTCTAT ACTCAAGGTA CCACTGCTTA CAAATTAGTT 003840 003841 AACAGGCTTG GGTGGGTTTT ATTCTGGGAT AGAGAGCCTT AGTGAAGGCC AGGATCTGGG AGTGAAAatt catgaattca 003920 003921 gtaaacattt actgagaaat tatactgtgt gtcagatggt gctaggtgct tgtaaaacaa aatctccatt acttgatgca 004000 004001 cactttatta ggaaagccag acatgttaaa tagaaaagga gtttagatga atcagttaac attgccctag caaatccaaa 004080 004081 caggatgtgg atttaagatt attacatcac aagattttga cagttgagct agatcttgaa agagatgcag gaattttttt 004160 004161 tttgcctaga gatgagagag gaggaggagt atgcttagct gagggattaa tatatgcagt cactgagttt tgcctggcat 004240 004241 aatgaaaaag agtagaaaat attagggcta gaggacggag gtatatggga aagatggtga taaggctaga gagggtaggc 004320 004321 ttagaccata ttatggagtt tggacttggt ttactgagca ttggggacct aattaaaggt ttttagtgga acgaagacat 004400 004401 aatcATATTT GTTTAGTAAA CGTAGGACTT GAATGACCTT AAAATTTATT ATGTTCTGCT GGTGCTATTG TAGTACTAAT 004480 004481 AATGGCTTTG ACTGGGTAAT GAATATTACA AACAAAGAAT TCCTAGAAAC TTGGAGCATT TTATCTAACC TACTTGCCTC 004560 004561 AGAGGTATTT GTTCTTATAG GCATTGTCTG AGTCTGGCCT TCAGCTCTTT GTTAACTTAG TTCAGAACAC TTGGGTCAGA 004640 004641 GTCAGTATAG TTAAACTAGG AGTTCAAGAA GTTAAAACAG GCACTCAGGA AATGCTGATT GAATGAAATG ATAACTTAAA 004720 004721 GGGGAAGTGC CTGGTATGGT CTCAGGCTTG TTATATTTAA GCCTTCTTAA ACCACCCATA TACTACTGGG GCATCCCTGT 004800 004801 ATTGTAGAGT GGCAGAGCCT TGACTGTGGT TGAGCTCTTC TCTTGAGCAA AGAACTGGGG CTGAAGGAAG TTACTATTAG 004880 004881 TCATAAGCCC TTTTAGGAGG GGAGAGTCTG CAACTCTTTT CTAGTGGGTT TTTTCCCTTT GATTCCTCCT CTCCATCTTT 004960 004961 CGTGTCCTCT CCTTTTTTCA CATACAGGTA TTTCCTTCCC TTCTTCATTT TTCTCCCCAC CCTCTCAAAT GTTTTGCAGC 005040 005041 ATGCTTTATC ACCTCCTATT ATATAAATAG AAAAAAAGAA AGCTAACTAC AAGTTAATTC TAAGGTGTTG TCAGATAAAC 005120 005121 AGGCACAAGC CTTTCAGTTT CCTGTCTGTG TTGTATCCAA CAGACAGATG TGCCACCCGT CGGTGTAGAG AGCGTTGTCC 005200 005201 CCACCCACCA AGAGGAAACG TGTCGGAGTA ATGCGAGTCC ATTTTCTTTC AGCTGGTCTA CCGATGCACA GCAACCAGCC 005280 005281 AATCCTGCTG TCTCAAGGGT ATCCGTACCT CAATGTCAGT TACATTCAGC AGAAAAAGTG ACATTTAATG GAAAGCAAAA 005360 005361 CAAATCAGGT CCTGATTTAA AATTTTAACA CGTTTAGATA GCTTATTTAA ATTCTAAGAC TGTTTTTACA GACTGTATTA 005440 005441 TTTGTATATA AATATGAACT ATAGTTTTTA CTAGTATCAC CAAATTGAGT GATACAAATT TCATCTATTT TATTACCCTA 005520 005521 TTTTTAAGGG AATTTTATGT TTTGTTTAAC CTTGATGAAT TGTATAAAGA GAGAATTTAA AAAATTACAT TCTTTATTTT 005600 005601 CTATTAGCTG TATTCATACT TTGGTTGCTT CAGACTTTAT ATATTGTTCT TAAAAGTTAG GAAAGAATTT CATGTGTTTT 005680 005681 AAATTGTCAC TTCTATTCTT TACAGAACCT TGTAGTGCCA AAAACTTTTT AAAAGGtaaa aaaataaaat aaaattaCAA 005760 005761 CAT |
Predicted Small Protein
Name | NONHSAT003247_smProtein_1799:2083 |
Length | 95 |
Molecular weight | 10085.778 |
Aromaticity | 0.0851063829787 |
Instability index | 50.2042553191 |
Isoelectric point | 9.30157470703 |
Runs | 16 |
Runs residual | 0.0413968547641 |
Runs probability | 0.0403859742095 |
Amino acid sequence | MAHCSLDLPGSGDSPMSASRVAGTPGMHHHTWLIFVFLVKMGFRHVAQAGLKLLSSSDLP ASAFESARITVLSHCSCLSSAFKKILYFILIKPG |
Secondary structure | LLEEELLLLLLLLLLLLHHHHLLLLLLLHHHHHHHHHHHHHLHHHHHHHHHHHHLLLLLL LHHHHHHLEEEELHHHHHHHHHHHHHHHEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | ooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |