NONHSAT003285
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003285 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1542 nt |
Genomic location |
chr1+:53536581..53539426 |
Exon number |
2 |
Exons |
53536581..53537300,53538605..53539426 |
Genome context |
|
Sequence |
000001 ggcgcctgca ctgggcctct ggtcctgtgt aggggctggg catggaggca gggcccggcg ttccctgccc tgtgcttaca 000080
000081 gtcagtggcg aggcagagac ttcttaaaca gaggcaccag atggaaatgg aaggactgtg tgtggggccc agagtaacct 000160 000161 cctaattcag ctccagccca acccaggaag gcttctggag gaggtggtac ctgCCCCAGC TTTCCATTCA TTCTAAGTGG 000240 000241 AGAGGGGACT GCAGGGCCAA GGAGGGGAAG GAAAAGTGGT TTCTGACTTG GGGAGCAGCT GTGGTTGCCT GTCACGAGGT 000320 000321 GGGAACGCTC CAGGAGCACG CCTGGAGGAG ATAGCATGTC GAGTTTGAAC TGCCCGTAGA TGTCCATGtg tgggctccct 000400 000401 gaaggcagga cccacactcc tgttgtgatc actgctgtgc cccagagccc atatgcagac ctggcccaga gCTGGCACCG 000480 000481 GGGGTCTGCT GCCATGGGGG AGAATTCCAA GGGAGGTGCC CAGCAGGTGG ACTGGATTCT AGGACTGGAG CTATGGGTAG 000560 000561 GGAATGGAGT CCAGGGCACA CCCCACTAGG CTGATGCTGC TTCCTTGCGG CCCCCTACCC CCCTAGAACA ACCAGCTGGA 000640 000641 AAAGATCTAC CCTGAGGAGC TCTCCCGGCT GCACCGGCTG GAGACGCTGA ACCTGCAAAA CAACCGCCTG ACTTCCCGAG 000720 000721 gcacctgtaa tccgagctac tcaggaggct gaggcagaag aatcacatga acccgggagg cggaggttgc agtgagctga 000800 000801 gatcacacca ttgcactcca gtctgggcaa taagagtgaa aAAAGCTGTC TAACTAAAGC AAGCTCCTCC AACAAGACCA 000880 000881 AGACAGCATC TCTCCTTCTA AGGCTTAGGA TTTGCCCAGA ATTCCTGATA CCTGGACTAG CCCATACCAA CAGTCATGGC 000960 000961 TCCTATAACA AAGCCTTGAA CTGCCACATG CATGTGGATC AGATGAAGGG ACATTGTCGT GTTTCCCATG CTCTTCAATT 001040 001041 TGTGTAATCC CTATGCAACA ATGGCTGCAA AGCCTGCCAT TCCAATGGGA CAAATGGTGC CTCTTTAGCT TTCTGAAGAA 001120 001121 GTTTGGATCC CTGATCTTCA TCATGTGAAA AATGGGAAAC CTCTGTGTCT ATTGACATAG TGATTGGTTG AAGAATCTCC 001200 001201 CTAGAGTGAG AAAACCTCTT ACACGCCAAC CAGCTTCTGA TCCCTCCCGT GCACCCCAGG CGGGTGTTTC TAAGACCTGG 001280 001281 GGGATGCGCA GGAGAGAGGC TTCAGAGAAG CTGAGCTTCC AGAACCTTGT CACAGGATCT TCGGTTCCGA GGGCCTTTAG 001360 001361 AACCCAAGAG TTGTAGAGTC CTCACATTTT AAAAAGATTT TTTTTTCCTG ATGACGAAAA TAACATCTGA CTGGGATAGA 001440 001441 AACTTTGTAA CATaaaatgg aaagagaaaa tttctcataa ttttgccact cggaattaac tactattgac attttggtaa 001520 001521 atttgtttcc atttttaaaa aa |
Predicted Small Protein
Name | NONHSAT003285_smProtein_1052:1147 |
Length | 32 |
Molecular weight | 3897.6716 |
Aromaticity | 0.258064516129 |
Instability index | 55.2903225806 |
Isoelectric point | 9.18743896484 |
Runs | 7 |
Runs residual | 0.0245295698925 |
Runs probability | 0.0350140056023 |
Amino acid sequence | MQQWLQSLPFQWDKWCLFSFLKKFGSLIFIM |
Secondary structure | LHHHHHHLLLLLHHHHHHHHHHHHHLLLEEL |
PRMN | - |
PiMo | - |