NONHSAT003342
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003342 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
879 nt |
Genomic location |
chr1-:54387235..54394673 |
Exon number |
3 |
Exons |
54387235..54387440,54389577..54389620,54394045..54394673 |
Genome context |
|
Sequence |
000001 CAGTTTAGAA GGAAGATGAC TGTATTCCTG ATAAGTCTCT TCTCTCATTA ATCGTGGAgg ttctagagtc atacctaaag 000080
000081 tttgaattcc atttctggca cttatgagct gtatatcatt gaacaccttg cttggctcct ctaaacctgt tttctcacca 000160 000161 gtaaagtggg ttaaagtacc tttctcataa gattgtagtc aaaagtgaat ggataaatat gtttgactca tcataggctc 000240 000241 tccataaatg ttTATGACCA AGACCACCAA TAGTAGTATT ATCGCCATAC ACACAAAAAA ATCGGAACAA TGCCAAATTC 000320 000321 AGAAAAGCTC TACTTGCTCT GTGTTGTATG GTTGCGAACA TTTGGAAGAT TAGTTACACA AGACTATATT TTACCATAGG 000400 000401 GTTTTTTGGA AACATACAGA GTAACTTCCA TGTTGTTTCT GATCCCAGTG CTCTGTGTAG TTCCACTGTG CATGATAATC 000480 000481 TCAGGCAGAG GGAAAAAGAA ATATAGGGAC AAAAACATAC AGCCAGATTA ACACTTTACT TACTTTGTTT ACAATGTTAG 000560 000561 TACAGACCTT GAAGATTGAA AAAAGCACGT CTAAAGAGCC AGTTGATTTT GAGCAATGGA TTGAAAAAGA TTTGGTACAC 000640 000641 ACAGAGGGGC AGCTTCAAAA TGAAGAAATT GTGGCACATG ATGGCTCCGC TACTTACTTG AGATTCATTA TTGTATCAGC 000720 000721 CTTTGATCAT TTTGCATCTG TGCATAGCGT TTCTGCAGAA GGAACAGTAG TCTCAAATCT TTCCTCATAA TGATAACAAA 000800 000801 ATGCTCTTGC ATGATTTTTT AACAATATAT TTAAACAGGA AGTTGTCACT GATATACTTT ATTAAAAGGA TTTTTATCA |
Predicted Small Protein
Name | NONHSAT003342_smProtein_347:505 |
Length | 53 |
Molecular weight | 6034.7915 |
Aromaticity | 0.134615384615 |
Instability index | 45.8884615385 |
Isoelectric point | 7.96087646484 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0382188911601 |
Amino acid sequence | MVANIWKISYTRLYFTIGFFGNIQSNFHVVSDPSALCSSTVHDNLRQREKEI |
Secondary structure | LLLEEEEEEEEEEEEEEEEEELLLLLEEEELLLLLLLLLLLLLHHHHHHLLL |
PRMN | - |
PiMo | - |