NONHSAT003387
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003387 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1873 nt |
Genomic location |
chr1+:55202362..55207980 |
Exon number |
2 |
Exons |
55202362..55203337,55207084..55207980 |
Genome context |
|
Sequence |
000001 atagttattt gtttgatcag ttcCCCTCCT GTCATCACCA CTGGCCCCTC TCCTATGTGG AGCCTTCCTC ACCCTACTTG 000080
000081 GACTCTTGAC TCCACATGTT ACGCTGCTGC CCCAGCGTGG GCGTCTTTCT CACCCCGCAC AGACTCTGAC ATCCCACACT 000160 000161 GCTCAACGAC CCTACATGGA CATCCTCCTC ATCCTGCTTG GGCTCTGACA CCCTACAGCA GGCCACCCCC TGCCATGAGT 000240 000241 GGTCACCCTC CTCACCCTAG TTGGGCCTGT AAACTCCATA TTACTTGTCC CCATGCATGG ATACCCTTTT CACCCCACAT 000320 000321 GGCCTCTGAC ACCCCACCTT GGACAGCCAT CTTACAAGGG AGCACTTCTT CCCCTGCTCA GGCCTGCTGG CCCCCAGCAT 000400 000401 GGATGCTCTT CTTCACTGGT CCTGCTCTGA CACCCCCGGG AGCTTCCTGT GCAGGCGTCT TCCTCACCCT GCTTGGGCTT 000480 000481 TGACACCCTG CACAGACATC CTTCTCTCCT TCTTCAGGCT CTTTCCTTCT CTGAGCCACC ATAGCTTTCT CCTCCACATA 000560 000561 CCTGATGGCT TTAGTCTGAT TTGTTAGGGA AAGGAGGGCT ACATaggcct ggccttgagt cttgattctt ctgtttacca 000640 000641 gcagggtaat gttggcaagt tgttgttctt ctctgagcct tgattctgtc tttggaagat ggaactgata atagcctctt 000720 000721 ttacagtggc atggcggggg ggtactaaat gcaaagcacc cagctacaca accatataaa ggaggcattc aaCTACTAAC 000800 000801 CGTTGCCATC TTTTTAATTT TCCCTGGGCT TAGCCTCAAC TAAGGCTGCC GAAGCCTTTA TCTCTGACTC TTGCCCTTCT 000880 000881 GTTAATCTTG CAGGTCTACT TTGAGGATGA GGACAGGGCA GAACTATACC GGGTGCCTGC CAAGAGCACC TTGCTACAGG 000960 000961 TTCTACAGCA CCAGAGGTAC TTTGTAAAAG CCCTGACACC AGCATTTTTG GTCTGTGTAG GATCCTCTCC TTTTTGCAAG 001040 001041 AATTTTCTCC GGGGGAGAAA GGTGTACCAG ATACGATGAC TAAGCCAGGG CCCCTGGATC TCCTCCCTTA CCCTCCTCTG 001120 001121 CTGGGAACCT AGCACACCTG AATCAGCTGG ACATACTGCT GGAGTCCAGT GCTTTCTTTC CGTCACCCTG GGGATAGTCC 001200 001201 TTCCTGGCAT CGTGGTGGGG GAGGAGCCTC TGGCTTCCCT AAACTGCAGC CTCTCTGGCT GGTCTTCACT TTCCTCAGTT 001280 001281 GATATAAAAC TCTGGGTCTT GGCCATGATG TCCTTGGACT CCATCGCTAA AGGGACCATC TGCTGCAGTT ACCACAGCAA 001360 001361 CTGACCTGAG CGGCACCCTG GTCTGTGGAG ATGGACTCAG GATCCAGTGA CATGATTCTG AACTTTTGTG GAGTTTGACA 001440 001441 CCTTAGAGAA GCTACCCCTC AAACTGCACA TCTACACACA AACAAACAAT GCATAGGATT CCAAGGCTTT AAAGCTGAGA 001520 001521 GACCCTGGCC TCAAGTTATT TCATGCGCAC AGAGGGAAGC CATGTGGGGT TGCTGAAGAT GCCTTGAGGT GAAATGGGGG 001600 001601 CAGGAAAGCC ACATCTTGCT CTGCATTTAT AAAGACCGTA CAAACTCAGA TCCTTGGTAC CCCTAAAAAG ATTGCCAATT 001680 001681 TTCTTCATCT TTGCCATATG GAGGACTGTG ACAGACTTTG GACAGTGGCC TCTTGAGTTC CTCTGCAGTT TTGACATTTA 001760 001761 GGATTTTGTG TCTTTTAAAC TGGAAAATCT TCTAGCATGT TGGGTTGTTA CAGAGTATAT TTTTGTCTGC AGCTGTTTGT 001840 001841 TGCCCCATTC CTAAGAGGAG TTTATCCATC CTG |
Predicted Small Protein
Name | NONHSAT003387_smProtein_398:586 |
Length | 63 |
Molecular weight | 7039.1703 |
Aromaticity | 0.129032258065 |
Instability index | 43.5387096774 |
Isoelectric point | 6.46966552734 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0306286678836 |
Amino acid sequence | MDALLHWSCSDTPGSFLCRRLPHPAWALTPCTDILLSFFRLFPSLSHHSFLLHIPDGFSL IC |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLEEEEELLLLEE EL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo oo |