NONHSAT003536
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003536 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1668 nt |
Genomic location |
chr1-:59348476..59369751 |
Exon number |
4 |
Exons |
59348476..59349406,59354821..59354880,59361517..59361681,59369240..59369751 |
Genome context |
|
Sequence |
000001 AGGGTCAGGG CCCGCGGAAA CCCTCAGCCT GGCGGGCCGG GAGGCCGCGG TGCTGCACTG GCTCGGCGCG CTCCCCGAGT 000080
000081 GGCGCTCAGG CGGGGCGCGT TCATTTCATC TACAGACTGT CGGGAAGGCT TCCCGAACTC CTCCTCCCTG CCCGCCTTTG 000160 000161 CGCAGGGCCG GACTCTTCGG AAACTGAAAT CACGGGCCGC CCGGCCCCCA CCAGTCCTCG TGGGATCCGG CCCGGGTTAA 000240 000241 CCTTCTATGG GGAGGCCCAG GAGGGCCGGG CGGAGCGCCG GGGCGGGCGT GCGCTGACGT GGCGAGCGGC TCCCTCCACC 000320 000321 CGCTCCTCCC GCGGGCACTG CCGAGGCCCA TGGGCGGGAA GCCGGGCGGC GGGCGGGACG TGGCCTCGGT CCCGGCCCTG 000400 000401 CCCCGCCCCG CCGCCACTGA GACTCCCAGC GCCACCAACG tcggagttgc agtttcttta gctgtcatat gcagacaagt 000480 000481 actacccacc tcgcctttgg agtgagcagc atCCCTGTGC CCATCCTGCT GTGATTCAGG AGTCTCGCAG AAGACATCAG 000560 000561 AATGCCTTTC TCTGAGTCAC AGTCTGTATC TTCTAGAAAA GGCTGTCCAT CTTCACCCCA AGCCCACTGG CTCCTGAGAT 000640 000641 ACGACATCCA GACCCAGTGC AGCTGGACCT GGCCCAGgaa gatcatgcgg tttctgggaa gcactggaga aggaaaaggc 000720 000721 tgaagaaagg aagaccggaa aagaaataca agtccttccg ccttggcaaa gatgatagta ccgttccctt cagtgttccg 000800 000801 gttctgctct attggataag ttccggtttg actatgacta cgtgaaaatg tggaaccaga ccttcacccc acattccagc 000880 000881 tccagctcta ccacagagga agtgcaatat caccttagtt attcaacaca ttatgctcct cgtgatacaa ccagagttca 000960 000961 catcagcaat cttggcagct ctcaccacgc tgctgactca CGACTCTCTC ATGTCCCAAT TTCCTGTCCA TTGTTCTTTC 001040 001041 CTCTACTTGG CCTGATTTCT AAAGGCCTCT CTTGGTTGCA TTAAGCGGGA TTCCTGAGGG ATTCCCTTGG CAGTTACCTT 001120 001121 GGGGGAGCTC TTAGGTTTGG GGCTGATCCA TGTCCTCTAA ATGTAGGACT TCAAAGCTCC CAAAGATAGG CAGGCCCAGT 001200 001201 GGGAAGCTGG GAAATGCTCT CTGACCCCTC TGGGAGGGCT GGCAGTCAGA GGGCCTTTTG GAAAGAGTCA GACCTGATCC 001280 001281 ATAAGTCCCT GGAAAACACC CTGCCCAGGG AGCAAATGCC ACTGTGGCCT TGACTGAGGC TTCAGAAGAG TTTGGGAGCT 001360 001361 GCAATTCATC CACACACGCA TTCATTTTCA AGTAGTGGTT TGCAGTTcag gctttggagc cacataagcc tggcttcaaa 001440 001441 gccactttcc agctttgtag gaagtctcta catttttaaa cctccatttt tttttcctgt aaaactgggg tcttcatggt 001520 001521 acttaacttc atcgtgatgt tgagagaatg aaaagaaaaa ggataaataa atggcttagc ctcgtgcctt ggcacataTT 001600 001601 GTGATTGTTT CTTCACGTCT TTGTTCTCCT GGTGAAGCAT TTATTCAGCA AGTGTTCACC AAGAGGCT |
Predicted Small Protein
Name | NONHSAT003536_smProtein_932:1054 |
Length | 41 |
Molecular weight | 4437.2456 |
Aromaticity | 0.1 |
Instability index | 52.085 |
Isoelectric point | 5.14312744141 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.0189233350999 |
Amino acid sequence | MLLVIQPEFTSAILAALTTLLTHDSLMSQFPVHCSFLYLA |
Secondary structure | LEEEELHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHEEL |
PRMN | - |
PiMo | - |