NONHSAT003588
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003588 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4021 nt |
Genomic location |
chr1+:60988410..60995163 |
Exon number |
3 |
Exons |
60988410..60990642,60991869..60993083,60994591..60995163 |
Genome context |
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Sequence |
000001 cagacaaggg aagagagctt gtacaaagaa actccccctt ataaaaccat cagatcttat gacacttatt cactatcata 000080
000081 agaacagcac aggaaagtca tgcccccatg attcaattac cccccaacag atccctccca caacaggtgg gaatttaaga 000160 000161 tgatatttgg gttgggacac agccaaatca tatcaCACGT GGTATGATAT ACCAGAAAAT GTGGAAGAAA ATGctatgtg 000240 000241 gaatattgtc aatcatccta ctagagagaa aacaagcact ggaggatctc actgacaatt aaatgcttag cccaaagcca 000320 000321 gagagacaca ttagtttctc tcacaagaca ctggccagaa ttggtcacat gggaatccag gcagtacaat cttactatgg 000400 000401 gccaagaagt cagagagttg agactattca gtgatcagca taaataaata GTATACCATC CTTTATAATT TTCTTTCATT 000480 000481 TTTGCCTTAA AATTATACTA GCTTAATTTC CTAGATTCTT GCTTTAACTT TTTAAGTTTT TTATTCCTCT TAAGATTTCT 000560 000561 TATTTTCTTG CCACTTTGAT GGTGTATTCT GAAGTTTCAT TTTATATATT ATTCATTGGT TTGGGGGGAA TTTGTTCATT 000640 000641 TACCTTTTAG ATGAAAGGCT TTTTTATATA TCTGGTATAC TCTAGTATAC TGCTCCAGAG ATAATGAAAA TAGAAATTTT 000720 000721 ACCACTCACT TTCAAAGCCT TGAAAAAAAT GATCCAAATC TTAATGGAAT CATAAAACCA CCTTTCTATG GTGGTCCTAT 000800 000801 TATCTAAATg tcaggagaac tactcctcat tctatttctt actaaataac tttgaaacca tggtcagatc atttcccctc 000880 000881 tctggaccta ctttccttaa ctataaagca tctaggtagt gtaaatgacc tttcaggggc tgccccaaca tactatTCAT 000960 000961 TTATCAGTTT ATTTCACAGT AGAACATGCA TTCTATAATG ATTTTTAACA ATCTCAAATT CCAAACCAAA TATTTCTTTT 001040 001041 TCAATGGCAG GCTTGTTGCT ACTTAAAGCT TTTCATGGAA GCTCTTGACT CAAGAATGCT ACAAAAATAG GCTCTTGTCC 001120 001121 TCTTCTTGCA TCTTGCAGAT GTACAACATT AGCATAAAGA GATGTTGGAA AAAAGGTGCC CTCTTCTACC ATGTAGTTCC 001200 001201 TTTGCTGCTA CGTGAACCTC ATATATTCTC ACCTCCTTCT TGAAATACTT GCAACAGAGT ACATAAAGGA TAGCTGAACA 001280 001281 TTCTTTGGAG AGGACAATTG TAGTTTAATC CAACCTTTGA AAAAGCTTTG CTCCTCATTC AAATTCTTTA GATGCTCTCA 001360 001361 GTGCGTAAAC TACATGTCAT GGTACATACA AAAGGGAAGA GAAAAACACA ATtgtcatgg tcagtttgag atgctacaac 001440 001441 aaaaatgcca tagactggta gactgggtgg tttaaacaat tacatttatt tctcacagtt ccagtatctg gtgagggctc 001520 001521 acttccttgt ttgcagacag ctaccttctt gctgtatcct cacattgctg agggagggat cccgtgtttc ttcctctttt 001600 001601 tataagggca ttcatctcat tatgaaggcc tcatcccaat gacctaatct aatcctaatt acttcccaaa ggccccacct 001680 001681 gcaaatacca tcacatcgag gactaaggtt ttactgtatg aattttgtgg ggaGGTGAGG AATAGCAGAT GAAACACATT 001760 001761 TAGTCTGGAG CAACAATTAA CATTGTTTTA AAAAACCACC ATGTCTTTCA AAATATATgt attttcccct aatgattaca 001840 001841 tttatttctc acaacaatcc ttgaggtaga tattgttata cctccttttg gatgtgaaaa ctgagttcac aaaggataat 001920 001921 taagagattc aagacttcac aTTTGTACTG CACTGTCTAC CAAAGCTCAT CAGTGTTACT GAAATTACAT GAGAGATATA 002000 002001 AATCTAAGTA AATAGAACCC CCTGCCTCAT GGTAATAAGT AGAAGACTCA GGTATAAGGC AAGAACAACT CCGTCAAGAT 002080 002081 GAGGAAACAC AGGCATTCAC ATACCCGCTG ATGCATGAGG ATAGAGAGCA TGGCCTCTGA GCTCAGGAAG ACTGGATTGG 002160 002161 TTTAATTCCC AGAGCTGAGG CTGTAGTAGA TTTCTTTTTA TTTTCTTTAA Ctttatttat ttatttattt gagagactct 002240 002241 gtctcaaaaa ataaataaaa taaaaTAata gcttagttat tttttagtat acctctcatc gtggggtcat ctggtggttt 002320 002321 cttatgatta gtttcaggtt atgcactctt gacagaaata accaagaagt tatgttgtgt tttaaacatg catgaggtca 002400 002401 ggagggaaat gatattattt gtcctattcg tgtagatatt aactttgatc attggttaag atgatgcctg taggcctctc 002480 002481 cagtgtaaac atgtcatttt tttcatttgt aataaatatt tttttcattt tattttattt tattgttgag acaggatcac 002560 002561 tctctgtaac ccaggctgga gtgcagtggt gcaatctcag ctcactgtgg cctcaacttg gggctcaagc gatcccttct 002640 002641 acctcagcct cctgagtagc tgagaataca tacacgcact accacacctg gctaattttt tttttagaga tgcggtctca 002720 002721 ctatgttgtc caggctgcca ttgaactctt aagctcaagt aatccttcca cctcggcctc ccaaagtgct agaattacag 002800 002801 gtgtgcacca ccatgcccag cctaagtaag tatttttatg gagcaaaact tttggggcta gataaatatc ttagtcccat 002880 002881 taatgtttca cccactagct ttattatcta tttataattc ttcctttaag caattaatac tgtgatgttt gcaaatgatt 002960 002961 tctctaattt tatcattcct gcctcattta ttaggtggcc ttttactcca aggaagagct tttacttctt ccacatttat 003040 003041 gtatttgttt atttgtttat atcaTTCTGT ATATCTGTAT GGAGTTCATG TTAcaagttt cctaaccctc aggaacctca 003120 003121 gttcctcctc tgtaaaatgg caatgaaaat atttaccatc taggtttgct gtgtagatta aataagctaa tataggtaag 003200 003201 gtcctCCAAA TCATGAGAAT CACATAAATT GGAGCTACTT ATATTAGTAA TAATAATAAT AATACTTGTC TGACTTTTAA 003280 003281 TATAGTGAGA ACAGTTCAGG GTCATCTtct gtcagtactt tatgaacttg aacgacccat ttaacctctc ttgctctcat 003360 003361 tcttctcacc tataaaacaa aagagttggg ttacatgatc tctaaattca actacaattt taatgtaaga aactaagatt 003440 003441 cTGTACCTca gatgaGTTTT GTGTTTCAGA ATCCCTGTTC TAGGAGACTT AAGAACAggc tgggcatggt ggctcactcc 003520 003521 tataatccca gaactttgga aggccaaagc gggcagatca tttgaggtca ggagttcgag actagcctgg ccaacatggt 003600 003601 gaaaccccat ctctactaaa aaaaattaaa aaatttgcca ggcgtggtgg tgcaggcctg tagtcccagc tgccagggag 003680 003681 gtcaaggcag aagaatcatt tgaacccggg aggcagagat tgcagtgagc tgaggtcata ccactggact ctagcatgtg 003760 003761 tgacagagca agactccatc taagaaaaga aaagaaaaga aaagaaaaAG AACAATGAAA AACATATCAA GTAAGCCACT 003840 003841 AGATCATCAA GTGGTACCAA GATTGGGAGC GCCTTATCAG CTACCAGGAG CACACCACTG GTGCTGACTA ATGGTCTTTA 003920 003921 ATACTTAAAA TTATTTCGAT GAGTTGCTTC ACATGTCAGg tgcaggctct agtctcaaac tccctgggtt ttaccaagac 004000 004001 tttaccattt tccagctatg t |
Predicted Small Protein
Name | NONHSAT003588_smProtein_2954:3145 |
Length | 64 |
Molecular weight | 7172.4346 |
Aromaticity | 0.15873015873 |
Instability index | 46.7174603175 |
Isoelectric point | 9.51434326172 |
Runs | 13 |
Runs residual | 0.0613864593456 |
Runs probability | 0.0248257307081 |
Amino acid sequence | MISLILSFLPHLLGGLLLQGRAFTSSTFMYLFICLYHSVYLYGVHVTSFLTLRNLSSSSV KWQ |
Secondary structure | LHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHLEEEEELEEEELLEEEEELLLLLL EEL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLL |
PiMo | TTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooo ooo |