NONHSAT003598
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003598 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2130 nt |
Genomic location |
chr1+:61542791..61544920 |
Exon number |
1 |
Exons |
61542791..61544920 |
Genome context |
|
Sequence |
000001 CTTTTCCCTG CCCCCTCCCT GCCCCCTCCG CCGCAGGCTG CCGCCGGTAC CTCGTGCGTG GTTACTATGC AAATTGCAGC 000080
000081 GATTGCGGAA ATAAACAAGG GGGTTGGGAG AGGAGAGAGG GACTGCCGAA TCGATTGCAA CTTCTGCAAA GTCTCGTACA 000160 000161 ATCCAAAGCA CGCAAGGCAA AACCAGAGCG AATCTGAGAA CCAGCCAGCC CGGGTTGGAT CGCTTTCAAA AGAGAGAGTG 000240 000241 AGAGCGAGCG AGCGAGCGAG CGAGAGCGAG ACAGTGAGAG AGGGAGAGAG CGCGCCTTGC AATTGCAAAA GCCTTCTGAT 000320 000321 TTGGAGTTAA AAAAAAAATT CTCCAAGAAG CCTGCAATTG GCCAACAGCT TTTTAAAAAA TCTCTTCCGG GTTTTCAACG 000400 000401 GTTCCAAGTT TATTTAGATA TTTTTTAAAT GCAAAAAAAA GGGGACAACA AATGAAGCAA TTCGTCTGAG CATTTTAAAG 000480 000481 TTTCTCACGT ACTCTTTTTA CATTGCAATG GTACGTGGTA CATCTTAAAC TTTCTATTTT GCATTTATAT GATATGCGTT 000560 000561 TTATAAACAA TGGTAGAATG ATTTTGTTTA ATGGCTAAGA CTAAAATTTC TCTAGCTCGC ATATGCACTT AAGTGATTGC 000640 000641 TGGGTAAATG TCTATTGTGA TGGTTTTGTT TTAAAGATGT AGCTTTGTTG ATGGTGTTTT TGCTATGTGC ATCAGAGACC 000720 000721 GGGTTTTCTT TTTCTTTTTT TTTTTTTTCG GGATTTGAAA AAATTGCTGA GCTTGACAGA TTTTTTTTTC CTCCTAGCGC 000800 000801 TTGCTCGGTT CCAGAAAGGG GTGGGGGGAA ATCCTGTACG TGCTCTGTTC TGTAAAAGAC GTCTGGCCTC AGCAGTCAAC 000880 000881 CTAACCCGAA AAGAAATGTC TGGACCCGGA GAATAATTGA CGATTTGATC CTCTAATCAA TGGGACAACT TGGGAGATTG 000960 000961 ACAAAAGCTT TATCCAATCA TAAGGAAGCT TGGGTGTACA ATAGTTCTCA ATAGCCAGAG GGGGCGGGGC AGAGGAGATC 001040 001041 TGAAGTTCTC TGCAGCTCTG AAGGGGATGG TGTGGTTCAA GCTGTCAAAG CTACAAGCGC TTCCGGATTT AGCAAGCACA 001120 001121 ATAGGAAAGA ATTTTCGCGT TTAAGAAAAA AAAAAAAGCT GATCGGGGGA GTTTTGCATG AATCGTGTGC CTTCTTCCTT 001200 001201 GTCTTTTGGA AAAAGAAACA TTCTGCTAGA GAAATAACTT TGTATTGTTA TTAACTTTGC ATTAGCTATT ATTTTTATGC 001280 001281 TCAGGGAAGT TGGTAACTTG TGGAATGTGA AGTTCAACTT TAAGAAACGT GTGGCTTAAA TCTTGCCTGA ATTGTGGGAC 001360 001361 TGTAGTGAGC TTTGGGAAGT AATATATTGC GTATTCAGCA TTACAAAACT TCTTACTCTG ATTATCTTAG AAGCTTTGGC 001440 001441 ATTTCAAGTA CTTTGAAATT AATAGGTAAA CCTCTCTTCT TGAACTCTAA ACAACAGTTT TAAAGGAGAG AATGTTTCAC 001520 001521 ATGTGGACTA GCAGCTGTCT TACACACTTG AAAGAAATTA GGGGAGTGTT TTTTCTTGGC TATTCTTGAA TTCTGCTTTT 001600 001601 TAAGTATATG GTCAGTAGGA AATAGGACGT TAAGACTGGC CAAGTTCACG TTTCTCCTTG TTACCACAAC AACCCCCGTG 001680 001681 GAGAGTGTAT GGAAGATCGC TGACTTGCTA ACTGTTAGTT GGAGTCTGGC CTCTTGGACA AGTGCTTGAT ACAAATCCAG 001760 001761 TGGAAACCAA CTGCAGTAGC TTGTCTTGGA GACAGTAACT GGCAGCCTCT GACTAAAATA TCTCCATCTC CTCCTCTCTG 001840 001841 AGCAGCGTAG ACACCCAATT CTGTTGGGAA GTGAATGGAA AATAATATGG GCTCTTTCCC TTCTTTGGAT TAAATTCCCA 001920 001921 TCGAGCTATT TCCCAAGGCT TTAGGCCTTC CAGTCAAATC TGGCTTGGAA ATTTGATGTA AGAATTCACT TGGACACTCA 002000 002001 CTTCAGCAAC ATGATTCAAT TTAGGATTAT ATGCACATAA GAAAAATCTG CACAGAAGTG ACCAGCAGGT CAAAAACCAG 002080 002081 AGAAGAAAAA ATGTTGAAAA ATGCCAGTTA ATAAAGTTAG TTTTGGTAAG |
Predicted Small Protein
Name | NONHSAT003598_smProtein_2030:2110 |
Length | 27 |
Molecular weight | 3077.6057 |
Aromaticity | 0.0 |
Instability index | 108.080769231 |
Isoelectric point | 10.0243530273 |
Runs | 6 |
Runs residual | 0.0214669051878 |
Runs probability | 0.0426455867632 |
Amino acid sequence | MHIRKICTEVTSRSKTREEKMLKNAS |
Secondary structure | LLEEHHHHLLLLLLLLHHHHHHHLLL |
PRMN | - |
PiMo | - |