NONHSAT003927

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT003927

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3871 nt

Genomic location

chr1+:73544441..73577148

Exon number

4

Exons

73544441..73544545,73545439..73545634,73549124..73549261,73573717..73577148

Genome context

Sequence
000001 AGTTTTTATA TATGTGTAAT TCCTGAAACA ATTTTGATGT ACCAGTGTTG GGAATAAATT AAGAAATTGC TTAGAAAGTT 000080
000081 CTGTCTTAGT AATGTACAGA TCTCAATGTA TTAAGCCTAG TACTCATTAG TTATTTTTCA TGACACTCTC CCTCCTCCCA 000160
000161 CCCTCCACCT CCAGTAGGCC CCAGTGTGTG TTGTTCCCTT CTATGTGTCC ATGTGTTCTC ATCATTTAGC TCCCACTTAT 000240
000241 AAGTGAGAGC ATGTGATCTT TGGTTTTCTC TTCCTGCCTT AGTTTGCCAA GGATGATCAC CAGGAATGCT TGTGATTTTT 000320
000321 TTCACATTGA TTATGTATCC TGAGCCTTTG CTGAAGTTGC TTATCAGCTT AAGGAGATTT TGGGCTGAGA CGATGGGTTT 000400
000401 TCTAAATATA CAATCATGTC ATCTGCAAAT AGAGACAATC ACCCCTAGGC AATATAAGAG TCTCCAAAGC TGTACATTTT 000480
000481 GCAAATCTTC AATATTGTCA GACTTTTTAT ATTTTCTTAA ATGGAAGTTA TGATATGGTA TCCCATACTT CAATTTACAT 000560
000561 TTCTCTGATT GTTATTGAGG CTAAGCATCA TTTTATTTGT TTACTGAACA TTAGTATTTT CTTTTCTGTG AAATTCCTAT 000640
000641 TACAATGTAG TTGCAAACTA TGGATTCTGG AACTAAACTG CATTCAAATT CTGGCTGTGC CATTCACTAT ATGTGGGATT 000720
000721 TAGGCACATT AAAAAAAAAA TCTCCCTGCT TAATGTATCA CCTATAAAAT AAGGATTGCA AGAATATCTA ACTGATAATG 000800
000801 CTGCTGTGAG GATTAAATAA GTCAATATGT ATAATCTGCA TTAAAAGTGT CTCCACATAG TTACCTATAT AAGTGTTTAT 000880
000881 TATCATTTCT TCGGACTGTC TTTTTTGTTG GTTACAATAT ACAATATTTA GAATATACAA AATTTTAGTT AAATTTTTTT 000960
000961 AGAATTTCTC ATTTGTACTT TTTCACATCT GGCTTATTGG TATTGATAGT CTCTTGCCTG TCATTGTTTC AGTATATTTT 001040
001041 ATATTTCTTT AAAAATATTA TTTTATATTT TACATCTGAT CTTTTAACAG CTAAATTTGC TTTGGGCCTA ATTATACATT 001120
001121 TTTAGATGTT TATCTCATAT TTCCTCATGG TGATTGGTTT TTCTCATAGT TTAGTAATTT TCAATGGTGA GCCTACCTTC 001200
001201 CTTGGACATT TGTGGGAAAA CTTTGAGGCC TGGGTTTGAA ATTATTTCCT ACAGAGATGA ATTGCATGCG CTTCTCCCGA 001280
001281 GTGATTGTGC TTAATTATTG CAAGGGATAA TAACAACTCG CACTCTTCTT CAAAGGCATT TTCAAGTTTA AAATTTGGGG 001360
001361 ATTTTGAGGG AAGGTTGTAC AAATGTAGGG TTATTGAAGA TTTGTGTTTA GAATTCAGAG ACAATGATGA GACTGGGTTA 001440
001441 AATTCCCAAA TTCTTACTCT CCTGAGAGTT TTGTTATTCT TTCAGGTCAT CTACTAAGAA TTCTTTCTTT GGGGATGTAG 001520
001521 AATATGAATA TGGGATAATG GGGTATGGTT GGGGTTAGTG GCCTCTCACG AGCTTTGTTC TATGGCTTGA CTTAGATGCT 001600
001601 AGCATGCCTA ACTCATTGAA AGCGGGCCTC TAAACTTGCA ATCATTGGCT CTACTTTCTT TTTCTTTTCT GATTTCTAAA 001680
001681 GCATTCTCTA AATTTCTAGC TACATCAGGC ATGCTTTAAA TATATATCTT TATATTTTAT CCAGCATTAA TAAGTGTACT 001760
001761 GTATCTGGAG TAGTTTTTCT GAACATTTAA TCCTCAACTG TTCTCTGAAT TTTTAATCCT TAGCAAGCAT ACTCTGATTT 001840
001841 TTCTCACTAG GTAAATTTAA ATTTCTAAAA GTACGTGGCT GGTGAAAGTC AATATCCACT TCGTACGTTT TTTTATGCAG 001920
001921 TTCTATTAGA ACTTTTCAAG TACACAGTTC ATATGTTCAA ACACATGGTT CACATCTGAA TTCAATACTA GACTATAGAA 002000
002001 CTAATCAAAA GCAGGCCATA TCTGAGGCTA ACTAACAGAT CAGGAAGTAA GAATGGAAAT AGAAACTATT TAGAGGAAAT 002080
002081 AATGATATGT ATGTGTAAAT ATTTTTTGCA TATTTATGAA GAATAAGAGT TTTGAGATTG GAGAAGATAG TTTTGAAAAA 002160
002161 GCATTTACAG GAAAGTTTAT GAAACACAAA TGATTCTATA TAAGTTTCTT TTTCCTTCTG CTAAATTATC AGTTAGAAAA 002240
002241 CTTAACAAAG ATGAAAGCAA TAAGCCTTGT ATGTTTGAGT TTTCTGAAAT TATAAGAAGA TAGCTCTTTG TGTTCAAAAT 002320
002321 GAGAAATATA TTTTAGCTGC TTATATAATA AGTTGAAATC TAATAACCTA ACTTTTAGAG AAGCGTAATG TGAGTATGGA 002400
002401 TATTTCTGAT GTTCAGTTTC CCTTTATATG TCCAATTAAC CTTTATTTAC TAAGAAACCA TAGCATTCTA ATTTGATTGG 002480
002481 CAGCACAAGA GCTGGCGCCA GTAAAGAGAG TTGAGAAACT CTGCTGGAAA ATCATGGTTT ATTAATACAT CATTAAGCAC 002560
002561 TTTAAATGGA TTCCAATGGC GTATGTCTAA GGAAGGAAAT AATTCAGCAT TTGTTAGTTA CTGACAGAGT ACAGAATTGA 002640
002641 AATTTACATT TTAAGCCTTA CGTTCAAAGT CCTAGCGTGC CAGCAATTGA ATTACACATT ACAAAATGAT AGTGTATGTC 002720
002721 ATCTGTCCCT TTACCGGGCA GAACTATAAA TCTTAATAAT TATATATGTT TATCCAGACA AATGCATATT ATCATGCAGT 002800
002801 AATGTAATCT ATAATTATAA ATAAAATAAA AATTAAATGT ATTTGCAATA TGTGTACAAT ACGTGTGTGA TAGACATTTA 002880
002881 GTACACTTAT TACTTGATGC TAAATGATAT ATACAGTGGA AGTATGCAAT TTGAATTGTA CTTTACTTTT AATGAACACA 002960
002961 TAGTAAGAAT ATAAGTGATT TTAAAGCACT ACTATATTTT CTCTATATGT TAACATTCTA AACCACTTCC AGGAAAATAA 003040
003041 AAATAACTTT TGAGGTTAGA AAACATCCAC ATCTTTATTT TAATTTCTAA CATCAATCTA TACAATGAAT GTATTCATTA 003120
003121 ATTTATTTCT CACTTTTATG TTTGAATGTA TTGGCAATCT AAGGATAAAT TATTTGTATA TATATCTAAT TAATTCATGC 003200
003201 TTAGAAGACA AAAAATTTTA GGAGATTTTT GACATTTCCA AGTCTTGTAG AATTTTAAAG TATTTTTCAC CAAATTTGGG 003280
003281 CTCTTAAATA TGAACAGATA AATTCTTCAT GTAATTTTTT TTACAGTATT AAAGATCCTT AAATAATTGA ATTTGCATAA 003360
003361 CAGTACTCTA AATGTTTTTC TTTTGGTGTA AGCTGAACTG TGAACTTTTG TTTTATTTTT GTGCACACAT AGTTTAAACA 003440
003441 GAATTGACTG ATGTACCAAT AACAACCACA TAATTAAAGT AATTTGACCT ATGTTGACTA AGCCACTTGA TTGAAATCAG 003520
003521 TGTTTCTCAA ACTGTATACC TTGATATTTA AGAAAAGTGA TCTCTAAATA ATTCCAGGGA ACAAATTGGG GATTGTATAT 003600
003601 GAGGTAGTAA TAGTAATTGC TCCCTCAGTT TATATCATAA TTTTTCTTCT TTCAATCAAA ATTTTTTTCT TCCTCTCTAA 003680
003681 CCACAGCATA GATTTTGATA TATGCTAACA CTCCACACAT TGTTGTAATT CATTGCTATA TTCTATCTTT TCCTAATTTA 003760
003761 AGTGAGAACC TGATCAATAG AGACAACCAT TTTCAAGGAA AATTTCAGTG TTTTAATTCA CAGCATGGGC ATGCAGTGAG 003840
003841 GTGGCTGGGG ATAGAGGCAT AGGGACAATC T
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Predicted Small Protein

Name NONHSAT003927_smProtein_305:532
Length 76
Molecular weight 8998.7707
Aromaticity 0.16
Instability index 79.076
Isoelectric point 9.21771240234
Runs 13
Runs residual 0.0243971631206
Runs probability 0.0433940728058
Amino acid sequence MLVIFFTLIMYPEPLLKLLISLRRFWAETMGFLNIQSCHLQIETITPRQYKSLQSCTFCK
SSILSDFLYFLKWKL
Secondary structure LEEEEEEEEELLHHHHHHHHHHHHHHHHHHLLLLLLLLLEEEEEELHHHHLLLHHHHHLH
HHHHHHHHHHHHHHL
PRMN -
PiMo -