NONHSAT003927
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003927 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3871 nt |
Genomic location |
chr1+:73544441..73577148 |
Exon number |
4 |
Exons |
73544441..73544545,73545439..73545634,73549124..73549261,73573717..73577148 |
Genome context |
|
Sequence |
000001 AGTTTTTATA TATGTGTAAT TCCTGAAACA ATTTTGATGT ACCAGTGTTG GGAATAAATT AAGAAATTGC TTAGAAAGTT 000080
000081 CTGTCTTAGT AATGTACAGA TCTCAATGTA TTAAGCCTAG TACTCATTAG TTATTTTTCA TGACACTCTC CCTCCTCCCA 000160 000161 CCCTCCACCT CCAGTAGGCC CCAGTGTGTG TTGTTCCCTT CTATGTGTCC ATGTGTTCTC ATCATTTAGC TCCCACTTAT 000240 000241 AAGTGAGAGC ATGTGATCTT TGGTTTTCTC TTCCTGCCTT AGTTTGCCAA GGATGATCAC CAGGAATGCT TGTGATTTTT 000320 000321 TTCACATTGA TTATGTATCC TGAGCCTTTG CTGAAGTTGC TTATCAGCTT AAGGAGATTT TGGGCTGAGA CGATGGGTTT 000400 000401 TCTAAATATA CAATCATGTC ATCTGCAAAT AGAGACAATC ACCCCTAGGC AATATAAGAG TCTCCAAAGC TGTACATTTT 000480 000481 GCAAATCTTC AATATTGTCA GACTTTTTAT ATTTTCTTAA ATGGAAGTTA TGATATGGTA TCCCATACTT CAATTTACAT 000560 000561 TTCTCTGATT GTTATTGAGG CTAAGCATCA TTTTATTTGT TTACTGAACA TTAGTATTTT CTTTTCTGTG AAATTCCTAT 000640 000641 TACAATGTAG TTGCAAACTA TGGATTCTGG AACTAAACTG CATTCAAATT CTGGCTGTGC CATTCACTAT ATGTGGGATT 000720 000721 TAGGCACATT AAAAAAAAAA TCTCCCTGCT TAATGTATCA CCTATAAAAT AAGGATTGCA AGAATATCTA ACTGATAATG 000800 000801 CTGCTGTGAG GATTAAATAA GTCAATATGT ATAATCTGCA TTAAAAGTGT CTCCACATAG TTACCTATAT AAGTGTTTAT 000880 000881 TATCATTTCT TCGGACTGTC TTTTTTGTTG GTTACAATAT ACAATATTTA GAATATACAA AATTTTAGTT AAATTTTTTT 000960 000961 AGAATTTCTC ATTTGTACTT TTTCACATCT GGCTTATTGG TATTGATAGT CTCTTGCCTG TCATTGTTTC AGTATATTTT 001040 001041 ATATTTCTTT AAAAATATTA TTTTATATTT TACATCTGAT CTTTTAACAG CTAAATTTGC TTTGGGCCTA ATTATACATT 001120 001121 TTTAGATGTT TATCTCATAT TTCCTCATGG TGATTGGTTT TTCTCATAGT TTAGTAATTT TCAATGGTGA GCCTACCTTC 001200 001201 CTTGGACATT TGTGGGAAAA CTTTGAGGCC TGGGTTTGAA ATTATTTCCT ACAGAGATGA ATTGCATGCG CTTCTCCCGA 001280 001281 GTGATTGTGC TTAATTATTG CAAGGGATAA TAACAACTCG CACTCTTCTT CAAAGGCATT TTCAAGTTTA AAATTTGGGG 001360 001361 ATTTTGAGGG AAGGTTGTAC AAATGTAGGG TTATTGAAGA TTTGTGTTTA GAATTCAGAG ACAATGATGA GACTGGGTTA 001440 001441 AATTCCCAAA TTCTTACTCT CCTGAGAGTT TTGTTATTCT TTCAGGTCAT CTACTAAGAA TTCTTTCTTT GGGGATGTAG 001520 001521 AATATGAATA TGGGATAATG GGGTATGGTT GGGGTTAGTG GCCTCTCACG AGCTTTGTTC TATGGCTTGA CTTAGATGCT 001600 001601 AGCATGCCTA ACTCATTGAA AGCGGGCCTC TAAACTTGCA ATCATTGGCT CTACTTTCTT TTTCTTTTCT GATTTCTAAA 001680 001681 GCATTCTCTA AATTTCTAGC TACATCAGGC ATGCTTTAAA TATATATCTT TATATTTTAT CCAGCATTAA TAAGTGTACT 001760 001761 GTATCTGGAG TAGTTTTTCT GAACATTTAA TCCTCAACTG TTCTCTGAAT TTTTAATCCT TAGCAAGCAT ACTCTGATTT 001840 001841 TTCTCACTAG GTAAATTTAA ATTTCTAAAA GTACGTGGCT GGTGAAAGTC AATATCCACT TCGTACGTTT TTTTATGCAG 001920 001921 TTCTATTAGA ACTTTTCAAG TACACAGTTC ATATGTTCAA ACACATGGTT CACATCTGAA TTCAATACTA GACTATAGAA 002000 002001 CTAATCAAAA GCAGGCCATA TCTGAGGCTA ACTAACAGAT CAGGAAGTAA GAATGGAAAT AGAAACTATT TAGAGGAAAT 002080 002081 AATGATATGT ATGTGTAAAT ATTTTTTGCA TATTTATGAA GAATAAGAGT TTTGAGATTG GAGAAGATAG TTTTGAAAAA 002160 002161 GCATTTACAG GAAAGTTTAT GAAACACAAA TGATTCTATA TAAGTTTCTT TTTCCTTCTG CTAAATTATC AGTTAGAAAA 002240 002241 CTTAACAAAG ATGAAAGCAA TAAGCCTTGT ATGTTTGAGT TTTCTGAAAT TATAAGAAGA TAGCTCTTTG TGTTCAAAAT 002320 002321 GAGAAATATA TTTTAGCTGC TTATATAATA AGTTGAAATC TAATAACCTA ACTTTTAGAG AAGCGTAATG TGAGTATGGA 002400 002401 TATTTCTGAT GTTCAGTTTC CCTTTATATG TCCAATTAAC CTTTATTTAC TAAGAAACCA TAGCATTCTA ATTTGATTGG 002480 002481 CAGCACAAGA GCTGGCGCCA GTAAAGAGAG TTGAGAAACT CTGCTGGAAA ATCATGGTTT ATTAATACAT CATTAAGCAC 002560 002561 TTTAAATGGA TTCCAATGGC GTATGTCTAA GGAAGGAAAT AATTCAGCAT TTGTTAGTTA CTGACAGAGT ACAGAATTGA 002640 002641 AATTTACATT TTAAGCCTTA CGTTCAAAGT CCTAGCGTGC CAGCAATTGA ATTACACATT ACAAAATGAT AGTGTATGTC 002720 002721 ATCTGTCCCT TTACCGGGCA GAACTATAAA TCTTAATAAT TATATATGTT TATCCAGACA AATGCATATT ATCATGCAGT 002800 002801 AATGTAATCT ATAATTATAA ATAAAATAAA AATTAAATGT ATTTGCAATA TGTGTACAAT ACGTGTGTGA TAGACATTTA 002880 002881 GTACACTTAT TACTTGATGC TAAATGATAT ATACAGTGGA AGTATGCAAT TTGAATTGTA CTTTACTTTT AATGAACACA 002960 002961 TAGTAAGAAT ATAAGTGATT TTAAAGCACT ACTATATTTT CTCTATATGT TAACATTCTA AACCACTTCC AGGAAAATAA 003040 003041 AAATAACTTT TGAGGTTAGA AAACATCCAC ATCTTTATTT TAATTTCTAA CATCAATCTA TACAATGAAT GTATTCATTA 003120 003121 ATTTATTTCT CACTTTTATG TTTGAATGTA TTGGCAATCT AAGGATAAAT TATTTGTATA TATATCTAAT TAATTCATGC 003200 003201 TTAGAAGACA AAAAATTTTA GGAGATTTTT GACATTTCCA AGTCTTGTAG AATTTTAAAG TATTTTTCAC CAAATTTGGG 003280 003281 CTCTTAAATA TGAACAGATA AATTCTTCAT GTAATTTTTT TTACAGTATT AAAGATCCTT AAATAATTGA ATTTGCATAA 003360 003361 CAGTACTCTA AATGTTTTTC TTTTGGTGTA AGCTGAACTG TGAACTTTTG TTTTATTTTT GTGCACACAT AGTTTAAACA 003440 003441 GAATTGACTG ATGTACCAAT AACAACCACA TAATTAAAGT AATTTGACCT ATGTTGACTA AGCCACTTGA TTGAAATCAG 003520 003521 TGTTTCTCAA ACTGTATACC TTGATATTTA AGAAAAGTGA TCTCTAAATA ATTCCAGGGA ACAAATTGGG GATTGTATAT 003600 003601 GAGGTAGTAA TAGTAATTGC TCCCTCAGTT TATATCATAA TTTTTCTTCT TTCAATCAAA ATTTTTTTCT TCCTCTCTAA 003680 003681 CCACAGCATA GATTTTGATA TATGCTAACA CTCCACACAT TGTTGTAATT CATTGCTATA TTCTATCTTT TCCTAATTTA 003760 003761 AGTGAGAACC TGATCAATAG AGACAACCAT TTTCAAGGAA AATTTCAGTG TTTTAATTCA CAGCATGGGC ATGCAGTGAG 003840 003841 GTGGCTGGGG ATAGAGGCAT AGGGACAATC T |
Predicted Small Protein
Name | NONHSAT003927_smProtein_305:532 |
Length | 76 |
Molecular weight | 8998.7707 |
Aromaticity | 0.16 |
Instability index | 79.076 |
Isoelectric point | 9.21771240234 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.0433940728058 |
Amino acid sequence | MLVIFFTLIMYPEPLLKLLISLRRFWAETMGFLNIQSCHLQIETITPRQYKSLQSCTFCK SSILSDFLYFLKWKL |
Secondary structure | LEEEEEEEEELLHHHHHHHHHHHHHHHHHHLLLLLLLLLEEEEEELHHHHLLLHHHHHLH HHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |