NONHSAT003965

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT003965

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

4893 nt

Genomic location

chr1+:75043114..75091782

Exon number

3

Exons

75043114..75043193,75080890..75080980,75087080..75091782

Genome context

Sequence
000001 ACAGTGGCAG TGGTAGCCCA ATGCCAAGGG TTCTGTTATT ATCTGTCCAG CTTATTGGAG GTCACATAAA ATATCAAAAG 000080
000081 TGACACCTCC CCATCCTGAC TTGATGATTT CTTCATGGAG CAGTGGAAAG AACGTAGTCC AGAAATTAGA AGGTTTTGGT 000160
000161 CCATGGCACA GCTGAGCACT GACAACACAT CCTTCCCTGG GCTTATTCCA TCTGAGAGGG AGATGCACAT GTATGATTTC 000240
000241 TTCTACGGTC ATTCTGAAGA TCGGTGTCAT CAATAATTTG GGCTTGGGAC TATCCAGTTT CACAGGGGCA TTCAGTTGAT 000320
000321 TGAAAATCCA ATATCAATAT CGTTTATAGT ATCAAAACAA TCTACCGATC AAAGTCTCTA AAATTACTAC AAAAACCTAT 000400
000401 TTGATATCCT ATGGCATTGC CCAATTTAAA TTATTTATAA AATATGCAGT AAATGTGTAT GCCAGAAAAT CAATGTCCTA 000480
000481 GGCATTGACT CCTAATTAAT TGTTTGAAAT ATTTTCATAA TAGTGAATGA GCACAGTGTT TGCCTGACCT CTACGAGGAA 000560
000561 GAGGAGGAAG TAGAAGCAGA ACAAAGGAAA GGAGGAAGAG GAAGAGAAAT AAGAAAGGCT GAGAGGGTTG AAAGACTTTA 000640
000641 AGGGGGGCTA GTAAGAAAAT TGTAGGCCTC TAGAATTGTA CACAGGCCAG CCTTTCCTTC TCATCTACTT CACTTTCCTA 000720
000721 AAAATCAATT TTAAGCTAGA CAAAAAATGT GCAGAGACCA ACTTTAAGTG GATCCAAGGC AGTAATTTGA GCTGATTCCA 000800
000801 TCAAATTATA GATGCATGAG AAGCATGCAT TTTCTAAAGA ATAACAACGC TGCAACAAAC ATTTTTGAAG GAACTACTAA 000880
000881 AATATTTCCA TCTCTAAACT CATCCTCTTC CACTTCAGAT GATTTCTTTT CCATTTCATT CTATTCTCTG AAGCAAAAAC 000960
000961 CAGAGGAAAG AAATCTGATG GAATGAAATT CTGCTAGCAA CCATCTGAAA GTATAAATGA GGGAGAAAGT CCAAGATTTA 001040
001041 AAAATTCAAG CAAATTTTCT TGCCTGTTGG AAGGAAGAGC TCTCAAATAA AGAGATAATC AAGAGACATA TTACAGGGCA 001120
001121 TCAAGAGCCA TGAAAGTAAA TCAGCAAACT GGATAATTTC TTGCAGATTA GAAACATCTC CCTGAATCAC AGTTGAAGCA 001200
001201 AAGGGGATGA TGCCAGGTCT GACTCCTACT TGGAAAATCA TAATCCCATG TTTCCTCTTG CCTGGGCAAC TGTGGAGCTG 001280
001281 TGACATGCCT GTGTGCAGCC CACTGCACAA TCAGCAGACC TCAGGCAAAT CCAGCTCCAA GCTGCACCTA GCACCTTTAA 001360
001361 TGAAGTGACT GATTAAATAA AAGCATCCCC CTTTTGTTAA GCAATACTTT CTGAAGCAGC ATGGATTTAG AGGCAGCCCT 001440
001441 GTGAGTTTGT AGGCGATAAG CACTATATAA ATACTAGGTA ATAGTGGGAT TAGAGTCAGG GAAAGACCTG TGTCCTGTGT 001520
001521 ATGAAATGAG AAACTGGAAG GAGAAACTTT TAAAGAGAAA AATACAGGAA AAGGCAGCCC TTTATCCTTT TCATTTCCTC 001600
001601 TTATTCATAT TTCTTTCTGC TAAAGCTTAT TTCTGATGGT AAAATCTCTT TTCTCTTGGG TCTCATTATT TCATTCTCTT 001680
001681 TTTAAAAAAT ATTCCCTAAT TATTGCAACC AAGTAAATTT TTTCTAACAA ACAGAAGGCC CAAGTGACAG CTCGTGATTA 001760
001761 AATATACACA CTAGGAAACA AACAGTAGTT TCTTTCAATT GACTGAACTG CCTCTATACT TACCATCTTG CAAAGATATA 001840
001841 ATGACCAGAG ACAAATGAAA CTTTAATAAG GTTTCTCGGC CCTTTCTGCT ATCCTCAAGT AAGTATCAAA ACCTTCCATG 001920
001921 AAAATTCAGT TCCATTTGAA GAACAGGAAC AAGGCCTCAT GCCCCTGCAT AACTAAAGCT CTTCTTTCTG ATTTCCTTCA 002000
002001 CCAGTTGCTT ATGACTTTCC TTCTCATTTC TTTTCAGATT TCTCAGGCAA GTACAACTGA GCTGATAAAG AAACAGCAAG 002080
002081 CCCATTGAGT GGTTAACCCA TCAGTCATTA TATATTTGCA ACATTTAGCA TTGAATTGAT ATACTAAGTT TTCACTGAAA 002160
002161 TCTCTTTTAT CCATGCCCAC ACAAACAGTA TAGTGTCAAA GGGCCTGTTC TTGTTGATAG TGTTGGGCAA TAACTCCTCT 002240
002241 CCATCTTCTT CACGAAGCCC TGGTGAATTC TGGACATCAA GTAGGGTGAC CATGAAATTT ATCATCCAAA CTTGGACACA 002320
002321 TAGTGAAAGA AGTGTTACTA AAAATTAGGA AATGGGGGGG AAAGGGGCAG AATTTTGAAC TATTCCAGGA AAACTGAGAA 002400
002401 GTATGGTCGC CCTACGAATT AGTCTCCCCA CTTCTAGTCT GATATCCCTC AAAATCTCCC TCCTGTTGGA AATCAGAGTG 002480
002481 ATCTATTGTT ATTAAACAGA TCATGTGACT CTCCTGCTTA AAGCCCTCCA GTGATTCCCA TTATCCATGG GATAAGTTCC 002560
002561 AACATTCCCC AGGCAACATA AAATGTGTTA TATTTTCTAA TACCTACTAT CTCCCAGTGA TTGCAATTTC TCATGCTACA 002640
002641 TTTAAATGTC TGGCAACGGA ACTGATTGTA GTGGCCCAAA CACTATCAAC TACTTTTAAT CTCCAGGCCT CTACAACTGT 002720
002721 ATGAGTCACA TGATATTGGA ACTATTCCCT TGTATTATCT CTCTCTCAGT AGATAAGGAT GACGTCCTAG TGATCTTCAT 002800
002801 GCCCCCAGTA ACTTGCCAGT GCTGATGCTT AGTAAGGACC TAATTAACAT TGATCCAACT GGACACAGAC ATGGAACAAT 002880
002881 TAGGCATTCC ATATTCTGTC CTTTCCATAT TCTGATAAAG CTACAGTAGG TTGGTTCTAC CCTATATAGG AAGCTTGCTA 002960
002961 CATTTATAGA AACTCAATAG TTACCAGAAC AGGAAAACTG ATTCACAGTG TCTTGTTAAA CCAAACACCA ATTTTGGTTA 003040
003041 CTATTCCTTG ATAAAGATTG ATACAAAACC AGCCTGACCA TAAAAAGTGG CAATCCCCAT GTTGATGCTG GTGGCCCTAG 003120
003121 AGAGAGAAAG TCTGACACAA GCCAGAGGAA GAGTGTTCAT ATCCCAAAGA CTTAGGAAGC AGCCGGTTGT ATGAAAACCT 003200
003201 CACAGCACTA CATTACACAT GTTCTTCCCT TTCTCTTCTC TTTCTCTCTG GTTTTGCCTC CCAGTTTGCT TTTAGTATAG 003280
003281 TTACTCTTTT CATTTTCTTT TGGGCCATTT TTCTTACTAC TGTGTAAACT TTACCTCATG CTTATTCCTA ATGTGCCCAG 003360
003361 AAACACCTCA ATCCTTACAG AGGCATCAGA GCTCTAGATT TTCAGGATCT CTCTCACCTG TTCCTTCCCA CAGAAATGAT 003440
003441 AATAAGGGTT CCTGCTCACA TTTCCTCCCC CACTCCCTCT GCTTCCTAAC CTACTCTGGT GCTTCCTTGT GTAGCTCTGC 003520
003521 ATGGTGTGGT GTAAGAGTTA TTAACATTAT TGAAGATGGG GTCTTGCTGT GTTGCCTAGG CTGGAGTGCA GTGGTGCAAT 003600
003601 CATAGTGGTG CAATCACTAC AGCCTTAAAC TCCTGGGCCC AAGCCAACCT CCTGCCTCAG CCTCCTTGAT AGCTGGGATT 003680
003681 ACAGGTGTTA GAGATTGGGT CTTGTTATGT TGGCCAGTCT GGTATCAAAC TCCTGACCTC AAGTGATCCT CTTGCCTCAG 003760
003761 CCTTTCAAGT CACTAGGATT ACAGATGTGA GCCACTGCAC CTGATCTTGT GATGGTTAAT TTTACCTATT AATTTAGCCG 003840
003841 GACTCCAATG CCCAGATTGG TAAACATTAT TCTGGATGGA TCCCTGACCA ATGCATGTGG TGTGTCCCCT CCTCTTGGGA 003920
003921 ACTGTGAGTA ACAATCTATC TTTTTGATGG CAATTGTCTC TTAATCTGTA AGTTTCACCA TACCTGAATA ATTTTTAAAA 004000
004001 ACCCACATTT TAAAATAGCC ATGCAGAACA ATATACCTAC TTTCATTAAG AAAGGGCCAA CTAGTGAAGG TTTCAAGCAG 004080
004081 TAGAGGAGCA TGTTGAGAGT TTTTCCATAA AGTTTAATTT AGCACCATTA TGTAGAATCT AATAAAACCG AGATGAATTT 004160
004161 TGCTTATTCC TTTTTCCCCT TTCTGCTTTT CAATCTCAGT TCCCTGGTTC TATCTGCTAA CTTCCTACTG ATCATTCAAA 004240
004241 GCCCATTTCA AATGCCACCT TCTCTAGGAG GCATTCTCTA ATCTCCTCGG TCAAAACTAA TATTTCTTTC CTCTATGTTT 004320
004321 CTATTGTGCT TTATTTATAT CACAATTATA GTACTCATCA CAATATATCA TGGTTAATTG TATATATATA TATCTGTCTC 004400
004401 TCTTGCTAGA CTGCAGTCTT TCTGAGAGAA ACAGTTTAGT CTTACCCATC TTGGTAACCT CAGGACCTAG CATATCATTT 004480
004481 GCCATTATCA ACAAAAACTG GACTGAGCTA TATTCTCATT TAGAGGCAGG ACAAGTATAT AGATGATTGC AATAGTTCCA 004560
004561 TTAAAAGATT AGTTATCAAG CCCCTGAACT AGAGACGTAG CAGTAAGGAT GAAAAAGGAT TATCAGGTAC ATGAGCCACT 004640
004641 GTTCAGGTGG CATCTAGAGC TGTGCCATCC AGGACAGCAG CCACTTCTCC CATTTGGATG CTGGGCATTT GAAAGGTAGC 004720
004721 TCATTTGCTG TAAGTATAAA ATATTCATTG AATATCAAAG ACATAGTATA AGAAAATACA TCATACTTAA TTAAAATTTT 004800
004801 TCATATTGAT TACAGGTGGA AATGATATTT TAGATATACT TGATTAAATA AAATATATTA AAGTCTTAAA ATTTAAAAAA 004880
004881 AAAAAAAAAA AAA
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Predicted Small Protein

Name NONHSAT003965_smProtein_3350:3604
Length 85
Molecular weight 9082.265
Aromaticity 0.0714285714286
Instability index 81.1130952381
Isoelectric point 7.61700439453
Runs 15
Runs residual 0.0445859872611
Runs probability 0.0521462639111
Amino acid sequence MCPETPQSLQRHQSSRFSGSLSPVPSHRNDNKGSCSHFLPHSLCFLTYSGASLCSSAWCG
VRVINIIEDGVLLCCLGWSAVVQS
Secondary structure LLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLEEEEEELLLLEEELLLLL
EEEEEEELLLEEEEELLLEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHHHHHLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT
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