NONHSAT004171
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004171 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1999 nt |
Genomic location |
chr1-:84267199..84326229 |
Exon number |
3 |
Exons |
84267199..84268934,84315590..84315705,84326091..84326229 |
Genome context |
|
Sequence |
000001 ACCGTTGCTC AGAGTCCAGG CCGGTTAGGA CCAGAGCCTA CCCCGGGTGG CATGGTGATG ATCCAGATTC AGGAGACATG 000080
000081 TCTGAGAAAG GATCGTTCAG ACTTTTTGAC CTATTTTACA TGAGGAATAA AGGATAGAGA ATCTTCTTCC CTTCTGGTCT 000160 000161 GACTAGGAAG GCCAGAGGGA GATGGTGAAG GAGACACAGA GAGAGTAAAA GAACAGACCA TGCCCAGCCT CTCCACTGCA 000240 000241 GGAGCTTGGA ATCAGGACTG TAAGCTTCAT GGAGACAAGA AACTGTGCTT TTTTTCTCCT TCCTGTGAAT GAATCCCATT 000320 000321 GCAGCTTTGA TTGTGGTTGA ATCACCTATG GAAGCCATGC ATCTTCAGCA TGTAGCACAT AATGGACACT CAGCAAATGA 000400 000401 CAACTGAATG AGCAAACTAA TTACTCTGAC CTTGAGCAGT GACTTGTGTG ACCTCTGGCA ATTGGTTCAC CATCTGAATC 000480 000481 CCTCAGCTAG ATACCTCCCT CTAATGCTGC TCCTCCATCG ACAGGCATTC CTCAGCGGTC AGTTGTTTCC CAGCCAGAGC 000560 000561 CCGCACTGGC ACTGATGTCT GCTATTATCA CTGGAGAGGC CCCGGGACTT CACTTGATGC TATCCCACTG GGATGACTGA 000640 000641 GAAGAAGTAG GAGAAAATCA AGCAAAAGCG TGGGCTCGTC TAAGTGTTTC CTCATCTGTT TCTTGGTATC TTCCTTGCTT 000720 000721 CCCTGCTTCT CCCAGCCCCA GACTTCCTTG TCTTCTCTCT TCCATCCAGA AAGACACACA TGCCCCTTCT AAGTATCACT 000800 000801 TTAGGGCTGA AGTCCAAAGT CTTCTCTTAG CTGAAATTCA CTGTGCACTT GCCACTTGGC AGAGACTGTA AACAACTCAG 000880 000881 TGCGTGTTTT CATAGTCAGC ATTAAAATAA TAATTGCCAC AACACTATTA AAGTTTTCCT CATTGTTGTA ACTGTTGGCA 000960 000961 AAGGCAAATG TCTGGGGAGA TTGACTCCCT GGAAAGCTTC ATTATGCTGC GAGAATATTT TTGATAAAAT TTCAGCAGTT 001040 001041 CCTGAGTGTC AACTTCACTA TGTGGTTTTT TTTAAAGTTG TCCCCCACCC CTCTCTAACA GGTCCTCCAA TTCACAAAAA 001120 001121 CATTCAGGTC AGTTGTTGAG TAACTGAATC TTTCCAAGTA ATTAACAGGT AGAATTACCA GGTAGCAGGC AGTGTTTGCT 001200 001201 TGTAATCCGT CAATAGTAGT TGCAGTGGGG CTAATTGTCA TCTTGAGTGG CCCTGCAACC ACATCTAATT AAAAGTGTCA 001280 001281 ACAGAGAGTT ATTTCTGTCT TTTGTTCCCA CTGCTAGGTT GTACGTGTTT ACTTCAGAAA TCCAGGCTCA AAGTAAGACA 001360 001361 GATATTTGGA ACATGTGAAT ATACAGGAAA AACATTCCCC AGCAACTCAA AGTACGTAAA AGCATTTAGG CCTCATTCCT 001440 001441 CTGTCCACCT GACTTTTTTG GTTTGTATTA GTTTATATAT TCAAGGCAGA TATACAGTAT CTGATAAATG CAAGAGGGAC 001520 001521 ATGATGCCTT TTCCTAAGCA GCAAAGTTAT ACTTTGCCAA CTTGACTGGG AGCTGGGCTG AAGGGACAAA GGCAGGAGTC 001600 001601 TTTTAAGACT CACTAACACT TACCTAGTAA TGGCAGTGGC TGCCACTACA GCTAGGTTTC TTGCCTTTGA TTCATATTCT 001680 001681 TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCATGCT 001760 001761 TCACTGAACT GTTTTCCAGT TCAAGGTAGG TAGATCTGCC AAAACTAAAA AGCCTAGATT GCATATAGAA CATGCCTGGA 001840 001841 TTTACAGAGC AAGGATGCAG GAACATATTT TTCCATCAGC AGAGTCTGGG TCTTGGCTAA CTTAAAGTTT TGTGACTGTT 001920 001921 CTTGGGATCA GCCCTGGGTG AAGCCTCTGT GAGGTCCAGC TGACTACTTC ATTCTCATAA ATACTTTCTT TGAAATCTC |
Predicted Small Protein
Name | NONHSAT004171_smProtein_407:574 |
Length | 56 |
Molecular weight | 6392.437 |
Aromaticity | 0.0909090909091 |
Instability index | 66.4490909091 |
Isoelectric point | 8.05181884766 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0390264213794 |
Amino acid sequence | MSKLITLTLSSDLCDLWQLVHHLNPSARYLPLMLLLHRQAFLSGQLFPSQSPHWH |
Secondary structure | LLLEEEEELLLLHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |