NONHSAT004543

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT004543

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

6594 nt

Genomic location

chr1+:94158694..94169123

Exon number

7

Exons

94158694..94159071,94159570..94159730,94159835..94161080,94161096..94161098,94162605..94162880,94162912..94163009,94164692..94169123

Genome context

Sequence
000001 CAGTGACCTG TGTGAGAGGC ACTGCTCCAA CTCAACAACC CTCCTGCAAG GGAGCAAGCC AGCAGTCATC CTTCTACCCA 000080
000081 GTACAGGGGA AATTTCTTTT TCCTGTACTA GGCTTAGGGA ATAGCACTTT GGGGGGCTAA CCCCTGGTGC TGCCCTAACC 000160
000161 TCTTCCTCAC AAAACCTTTC ATACAGCTGT GAGAGGCAAA CTTCTCAGTT GTCAGCATTT CCAGGAAGAA AGAACCCCTT 000240
000241 GAGTGATCTC CATGTGACCT CGTCTGTCTC AGGTTCATGA ACATGAAGGT GAGAGCAGCT CTTCCTCACA GCATGACCAG 000320
000321 GCAGTGACAA ACACGCCACA TGGAAGGAAA TGAGTGAACA ATCCTCGCAT ATTCTGAAAT GAGGAGATTG AGGTGCAAAG 000400
000401 AGAGGCTAAG TTGCCCAAGG TTGCATGTCT AAAAAGTATC AGAGGATGAG AATACAGATC TGACCAGGAT TCTAAAGCCC 000480
000481 ACGTCATTCC CTCCACACCT GGTAGCTTCA GCCTTGCCCA GCTCCTGGTG GAACTTCCGC TCCGGGATCC TGAAATGCCC 000560
000561 TGCATGAATC ATCAAGGGAC AAAAAGAGGA GACTTTCCAG GGACTGACGC CCTCCCAGCC ACCGTGGGAT CCCGGCTACT 000640
000641 GTGACTGAGC CCAGTCATGA CTCCAGAGTG CTTCACATCA CATCATTCTT TCTCAGCATC CAAAATGTGA GTCCTCTGGG 000720
000721 CATGAATTCT CTCCTCCACT CCACTCTCCA TGGCTCTCCT GGTCCCTTCC TCTTTCTTCT CCCTACCCCT TTCTTTTCCA 000800
000801 AACCTCTCAT CCATTCTTCT CTATAGTCCC CTTCTCCATA CTTGGAGGCC TATGCCTTCT TAATATCAAC CTTCTCCAAC 000880
000881 TTTCCTGATC ATTAAAGTCA CCTGATCATC AGAATCATGC ACATCCCCTG GCTCCTGTCC CAGAGGTCTG AATTGGAGAG 000960
000961 ATCCAAGTGA GACCTGGCAG CCAATGTTTA ACAAGAGCCC ATGTGTCCTT ATGATCAAAC ACATTTGGGA GACCCCAAAC 001040
001041 CACACTCCTC CTGTTGTAAT CCACCAAACA CTGTTCCTAA TTCACCCTGG AAATGGCTGG GGTCCTCAAA GCCACCCACT 001120
001121 CCTGTCCTGT GACAGCACCT CCAATGCTCC AGCCTCAAAG TAAAATGACC TCCCAACTCT GATCACCTTC ACCTGTGCTC 001200
001201 CACCTCAGCC TACACTCTGG CCCACCTGGG CCTTGTTATT CCCTGGGACT GCTCCTCCCC TGACATCGTC AGGCCAATAG 001280
001281 CCTCTTTCTG CCCACATTCC CCTCGCCCTC CCACATTCCT GTTCCCTGGC ACCTGGCCCT TGAGCATAAT CCTGTCATGC 001360
001361 ATCGACATCA TTCTGGTCTA TCAGGCCCCT CCTGGGCTTC CTTCTTCCTT CCCTGCCCAC CCATGGTTAA TCACATGAGC 001440
001441 CAGTTTGTTG TCAGTCTGGA CCCATATCCT TCTGTTGTAC TTACTCAGGA ACGCTCAGAT TAATTCATTC CATCTTCTCT 001520
001521 GAAATCTTCA GAGAAACCCC ACAACCCTGC AGGCCCACCC CATCACAAAT CTAGGGTAAG CTCAACTTCA TCTAGAATTA 001600
001601 GAGCCCATGA GGCCATCAGG CTCCAACTCC CACTCCTTTT CCCCCTACAA TGGAACTGAC ATCACTGTCA ACCTCTCCAC 001680
001681 CTGTCTCTTC ACTGTCTCAC TCCTGTGGTT CAGTAGAAAC CCACCCAGTA TGTTCTTGCT GCCATCCATC CCATTCCCAT 001760
001761 CCCACTCTAT CATCACCCTC TTTCTCTCCC TCTCACAGTG AAGCAGCAGG ACCACCCAGG TACAGCGCAC CTCGAGCTCT 001840
001841 GCCCCTCAAA GGGAGTGGCC TCTCCTGGCT ATTGGCAAAG CTACCAGAAA CTTGGCTTCA GACCATTCAC ATCTAAACAG 001920
001921 GTGGTCCAGA TATTCTGGCA GGGATGTGCA TGTGAGTTTA AAAGGGGGAG AGATGGAATC ATAAAATGCC ATGTTTTCAG 002000
002001 ACTACCCTAA ACCCTAAGGG CTTAGGCTGT TCCTATTTGT GTAACCCAGT TGTGAGGGGA TAGTCTGCCC ACCTCAGGCA 002080
002081 TCCTGAGATG CCAGAGCAGG CACCCAGGAC GCTGTTTATA AGACAGCCTA CATGCCCTGC TGGGAGGAAA GTGAAGAGGC 002160
002161 CGATGAAGGA ACTGAACCTC AGAGAGAAGA GATAACCCTG GTCGGCCAGT AAACTGTAGA GATCCAATTT GAATTCTCCC 002240
002241 CTCTGTCTGG CTCCGACACA TGGGGTTTTC TTAACTCACA CTGTGTCACC TGCAGAGTGT TTCCCTTCGG GGGAGAGAAA 002320
002321 CCCAAAATAG TGAAAACGAA CAGAAAAAGT TTGAAGAGTT CTGCTTCGGC ACTTGAAGCC AATCTCCCTA CAGTCTTCTT 002400
002401 CCTGTTCATG CTTCCAAGAT GCTATCAGGG AGGCTGGGCG CTGGGGACAT TTACACTCCT TGCCTCCCCA ACCCCAACCT 002480
002481 CGAGGATTTC TGTAGGGGTG AAATCACCTC ATTAAAGCTG TACCTTGTTG CGGGGGCGGG GGTGGATGGG CAGAAGAACT 002560
002561 CATGAGGTGA TCATATACCG GCCTCAGTGA TTCTCTCCTC CTCCCGGCCC CATGTCTTGT TTTTAAACTC CAGCAAGGAA 002640
002641 GAATCTTCTT TCCCTCCAGC CAGCCTTTCA ACCCACTGCT CAAACAAAGC ATTTTCTCTC AGAGGATGAT TGCCAAGACC 002720
002721 CACAGTTTAG TTCATGTGGG AGTGGAGAGG GGCCATAAAT AATAATAGCC AAGTTTACTG AGTGCTTATT ATGTAATAGC 002800
002801 CAAGCACTGT TCCAGAGACA TTACATATAG ACCCATTTCA CACACACAGG TGCACACACA CACACACACA TACACACAGT 002880
002881 ACAAATGAGG AAACAGACCC AGAGAGGTTG CCCGCCATTT GCCAGCTCTT ATGAAGGGAC TTGGACAGCC TGGCTCCCAG 002960
002961 ATGCTGCCCT GCCTCTCAAA GATCATCTCC CCTGGCTACC CCACCCCATT TTACAGGTAA GGCAATGAGC CCAGGGAGGT 003040
003041 GAGGGACTTG CCTGGCCAGT CAAGGGCAGA GCTAGTCAAG TTGTCAGATC TTCTGACCAA AAAACCCAAG GCTTTTTCCT 003120
003121 CCACCCTGGG GGCTCAGCAC ACCCAAGACT CCAGGAGTAT GCCAATTGCA CTTCACCCAG TTCAAAGTTT AGATCCCCCC 003200
003201 TAATGCTTTA AACTAGAAAA TTCTTTTTTT TTCTTTTGAG ACAGGGTCTA GCCTTGTTGC CCACGTTGGA GTGCAGTGGT 003280
003281 GTAATCTTGG CTCACTGCAG CCTCCTCCTC CTGAGCTCAA GCCATCCTCC CACCTCAGCC TCCTGAGTAG CTGGGACCAC 003360
003361 AGGGGCACAC CCCTACACCT GGCTAATTTT TATAATTTTG TAGAGATAGT CTCAAACTCC TGAGCTCAAG AGATCTGCCT 003440
003441 GCCTCAGCCT TTCAAAGTGC TAGGATTACA GGCATGAGCC ACTGCGCCTG GCCTAGGAAA TCCTTAAATG CCTATTTATT 003520
003521 TGGACATGCC ACTGGCAGAC ATCTGCACTG TACCTGAGCA TCCCCGATGG GCTCATAGAA TGCTAACTAT AGCTTCCACC 003600
003601 TATAGGTTAA ACAGAGATTC TGCCCCTCTC CCCTCCTTGG CAGATGGATA CAAACAGAAG CCAGGAGGAA CAGCAGCACC 003680
003681 TCACACATCT AGTAGCACTC CGGCAACGAC TCTGAATACT CCCTGCAAGG CCGGCAAATA TTTTGATAAT CTTTCCCCTA 003760
003761 CAGGATTCTC CTGTGGAGAA CAAATGGACA CAGTCGGGAG CTGTCTTTCA GCGGAATTCC ACAGGAAGAA ACATTTCATC 003840
003841 AGTGGAGAGG GTTTTGACTC AGGCCTTTTG GGGAGGGAAG CAGATTGCTC TGAGCTACTG CGGAGGGTAG GCTCTGCCCA 003920
003921 CAGGCGTCTG CCGTCCCCTC AGGACCTAGC GCAGGGCAGG CATGTGGGCA CCCTCAGCGG ACCTCACCAG GTGGGAGGCA 004000
004001 GATGGTGTGC TGTTAAAAGC ACAGCCTTCG GGGCAGCCAA ACCTGGGTTT TGAGCAGTGG CTCTGCTGCT TGAAGCTGTG 004080
004081 TGACCTTGGG CAAATTCCTT CACCTCTCTG CTCCTGTTTC CCCACTGTAA AATGGGCGTA ATGAGAATAT TTGCCTCTTG 004160
004161 GACTGGCCCT TGAGAATTAG ACCCAATGAT GTCAAAGGAG CATGGAGCAC AGGGCCTGCC ACACGCAGGC ACTGAATAAC 004240
004241 CACAGCGGTC ATCGTGAGGT CCCCACTTGC CTTGAAGGGA GCTGTGTGGC TGAGTTCTCC GCTGTCACTG GTTCCCTTAT 004320
004321 TGAGCTTGCC TTAGGGGGCC CAAGGCCTCC TTCCAACCCA AAACGTGCCT TCGAGAGGGG CAGAGACCGG CCACCCCACG 004400
004401 TGTCTTCCAT TGGAATGGAA GTCAGGGTTC ACCAGGCTGG GGGAGGGCAT TGATGCCCTC ATGTGCATCG GTCTGTTGGG 004480
004481 CCCTGAGAAA AGCCCTAAAG ATGCCTGGCA GGGGACATCT CTTCACAATG ACATATTATT ATTTTGAAAA AGATGAAGCC 004560
004561 GAATTAGCAA GCATTTATAA AAAGTGGAAA CAAAATGAAG CCACTGGGAC AAAAGAGACA CTGCACAGAC CAACCACCGT 004640
004641 GTGTGATGAG GGGCTGGGCA GGCCCACAGG GGCCTGTTTT ATGTGGTGGC CCTCTTTGTC CCCACTCTGC CTGCTTCCCA 004720
004721 GGCCTGCCCC TGGGCCTCTC TCCAAGGATG ATTCTGTCTC CATTTTTGGT ATCTACAGGC CTTGTGGGAC TGGGAGGACT 004800
004801 GAACTGGGCC CAGCATTCTC CAGGTGACTC ACCAGGCAGG CCATGCAGAA AAGCCACTTC CTGCATCCCT GAGTGGCCAG 004880
004881 TCATCCTCCT GGTACCTGCC TTAAGAACAT GTGAGCCACC CTCAGGGGCA GGGTGGGACT GGGCTGTGCT CCAGGCATGG 004960
004961 GCACCACATA GAGAAGGGCT GAGTGAGTGT AGTGGAAGAA CCCAGGCCAT CCAGGAGCCT GTGGCTTGGG GTGGGGTTGG 005040
005041 GGGTGGACAC AGTGTTCCTG GTGCTTTCTC CACAAAAGAA ACCTCACCTT CCTAAAGCTA TCGATCCACC CACTGGCGCT 005120
005121 GTGGCAATGA AATTCTCACG GGGGAAAGTC TCAGGGCCAG CATACCTACC CCTGCACACT TCATGCCCCC AAGCACAGCA 005200
005201 CGCCATTGCA GCAGGCCCCT TCCTGAAGCT GCGCCCCCAT GAATACGCCC TGTACCCATT CTGAGAATCA GGTCTGATAT 005280
005281 TATGGGAAGA AAATGTGTGC CTAGGCATGG CGGGGAGGGG CAAGTTAGGC AGGTCAGGAG GGAGAGTTTT GACAAGAAAT 005360
005361 CCAAGCACAT GGGCCACAGA GGAGTCTTAA AAACAACCTC AGCCCAACTG TCTCCTGACT GTTCCCCCAA CTTATCAGCT 005440
005441 CAGGCCCAGG TCAGAGGAGG TCCAGGCTGG CCTGGCACAG CAAGTTGAGC CTGGTTCCCA GACCCTGCAG CTGGTTTTGA 005520
005521 GCAATGGAAG TGGCAGTGAG TCTGTGCTCA TGGAGTTCCT GGGCTCAGGC CCAGGTGGGG GTGGGGATGG GGGTTGGGGG 005600
005601 GATGTCCCCT GTCTTCGATT TGACTCTGCT GCTCCAGTCA CAGAGCTCTC TCAGAGGCAG ACATGAAGCC AAAGCACTTC 005680
005681 ATTAAGACAG GAGGTCAGAT AACAGCCCCA GCCCTCTTTG GAAACCGCAC ACCGCCCAGT GGCATGGAAC AGGCCAGGTC 005760
005761 CCAGCCCTCC CAGGAGTGCC AGGCATTGTA TTTCAGAACT GAGCTTCAGC TACTCCCACA GGAAGGAGAC GACTTGCTCC 005840
005841 TACCTTGTTT TTAATTTCCA GAATACTGCA ATCCCCTTAG GAAAACTCAT GTTTTCATGA TAGAATGGCA GCTGCCCACG 005920
005921 CATGTCAGAG GCTTCAGACC TGATCCTGAT CCTGATCAAG CCTGGAACAG TGATCTCTGG GCAGCAGATG AACAGCCCAG 006000
006001 GGACCAGCAA AGAGAGCCTG CCCTCTGTGG TCCAAGGCTG GCCACCGCGG CCTGTGCTAG GCAGAAGAGC TCACAGGTGT 006080
006081 GTCCTGCTTT ACTTAACTCA AAGACAGCTG CTCAGAAGTT GCCTGGAATT GGAACTGTGA TCAGGCCAGG CCCTCCTTAG 006160
006161 GTTTCCAGAG GGACTGCTTA TCATATATAC TACCTGTGTG GTGAGGGGTC TCACTTGAAG ACATAAAAAA TGCACTCCAA 006240
006241 ACAGGAAAAC AACTTTTAAA AATTATTGAC ATTTAACGAT CAGCTGTGTG TGTATTAGGG ATTTTTAAAA AGTGAAACAC 006320
006321 AGCCAGGCAC AGTGGCTCAC ACCTGTAATC CCAGTACTTT GGGAGGCTGA AGCAGAAGGA TGCTTGAAGC AGGAGTTCAA 006400
006401 GACCAGCCTG GGAAACAAAG CAAGACTCTG TCTCTATTTA AAAAATTAGC AGGTGTCGTG GTACACTCCT GTAGTCCTAC 006480
006481 CTACTCGGGA GGCTAAGGCC AGCGGATTGC TTGAGCCTAG GAGTTTGAGG CTGCAGCAAG CTATAATCTT GCCACCACAC 006560
006561 TCCAGCCTGT GACAGAGCAA AACCCTGTCT CTTA
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Predicted Small Protein

Name NONHSAT004543_smProtein_1649:1915
Length 89
Molecular weight 9283.4143
Aromaticity 0.0454545454545
Instability index 71.1568181818
Isoelectric point 7.04095458984
Runs 12
Runs residual 0.005
Runs probability 0.0216245657422
Amino acid sequence MELTSLSTSPPVSSLSHSCGSVETHPVCSCCHPSHSHPTLSSPSFSPSHSEAAGPPRYSA
PRALPLKGSGLSWLLAKLPETWLQTIHI
Secondary structure LEEEELLLLLLLLLLLLLLLLEEELLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLHHHHHHHLLHHHHHHEEL
PRMN -
PiMo -