NONHSAT004550

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT004550

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4451 nt

Genomic location

chr1+:94312708..94317158

Exon number

1

Exons

94312708..94317158

Genome context

Sequence
000001 ACGGTGCAAC GGCTGGCCTG GGCCTGCAAC TCTGGGGTCC CGGCCGGGCT GGAGCGGCCG CCGGAGAGAC CTGGTAGGCG 000080
000081 GGGCGCTTGG GGCAGGAAGG GAGCCGGGGA GGGAAAAGCG CGACTGTGAT TCGTACGGCT GGGCCCGGAC CGTGAAGGGG 000160
000161 ACCGGGTTGC GGCTGCCCTC ACACCGACCA GGTGGGACCG TCGGACTGCG GCCGCCCTTG GCTCAACTGG GTCGCCGACC 000240
000241 TTGTTGAGGG GCGACCACTG CGGGGAGACC GAGAGCCTGC GGCTGGCGTT TGAGGCGGAT GGCAGTGCCC TGAGCGCGGC 000320
000321 GGCTGGGTCT CGGTGACACT GACGACGGGA GGCGCGGTCG GAAGAGCGCG GGGCCGTCGC CTCTGGCTTA ACATAGCAGA 000400
000401 TGCGCTGAGA CTCCAACAGG Tggctccgtg gcgcaatgga tagcgcattg gacttctaga ggctgaaggc attcaaaggt 000480
000481 tccgggttcg agtcccggcg gagtcgTAAC GCTTTTTTCC CTCCCCCCTA CAATTTATTT TCTGCCTCCA TCATGTCTCT 000560
000561 TATTTTTTTT TTTTGCTAAA CGGTTTAACT TCTCTCTCAT TCCCTGCTCT CGCAGTTCAC TGCATTCGGT TCTTGCGGTC 000640
000641 CTTTCTTAAG CGGCTCGCAG GGTCCCGAGC CCCTCAGCTC CCCGGGCCTC GGTGGCCCAG GGCCCAGCTC AGCCGACTGG 000720
000721 GCAGTCGATG TAGGTCCTGA GAAGAgcggc ggcggcggcg gcggcggcgg cgAAGGAAAA GCGACACTGA AGCGAAGGCT 000800
000801 CGCGGTTTCG GCCTAAAGGA AAGTGCAGGG GAGGCCCGGG TCTCGGGTGA CACCCCCACG CCTTGAGCGG GACTGTGGTT 000880
000881 GCGAGGGAGG GACGAGAAAA CACGCCTACG CCCTGCGTGC GCTGTGCTGA CTACCTCTCC AGCATGGAGG CTTCCAGAtg 000960
000961 agcagacacc cgaatcccag cgggagcccg tcaaaaatgg agatttctgc cgtcactctg ggactcttaa ttcggtccgt 001040
001041 ctggggtggg gcccaggaat ctgcatttct gataaggtcA CCCGCTCCCC TCCCCCATTA TTCCAGTGCA AAGAGGTCCT 001120
001121 AGGCCCAGTG CCCATCAGCT CCTCAAGACA GGAATTACTA TATCTTTTTC TGACAACTGT TAACTTTGTA CAAGGTTAGC 001200
001201 AAATAAATCC AGGAATGAAT GGAATCTTAA AACTCGTAAA ACAACAATGA AAGGTAATTC ACACAAAAGA TACAAAATCC 001280
001281 AAAATTGTCA AAAAAGATAC AGGGAAAAGT AAACATCCAT GTTATTCCTA TAGTCCAGCC TTGCAATTCT CTCCACAAGC 001360
001361 CATTAGTGGT AATGGTTTCT TGGAAATATT TTCAGATTTA TTTTATGCCC ATATCAGCAT TTTTAACATC TTTTGTCATA 001440
001441 AATATGTCGT AAATAACAAT GTTATTGATA CATATCCTTT TAAAAACACA ATGGTAGTAT GCTATACTGG CTTGTTTTAC 001520
001521 TTATGAATAT ATGtagagct gcctcgttcc attgtacgta tgtatggtaa tgatttaaca gtccctaata gctggacatt 001600
001601 tagattgcca gtattttcct attacaaaca atgcatcagt gaacatcctt gttcttttat tattgtacac aagtacaggt 001680
001681 acatctatct gtaggataga ttcctagaaa gttgaattgc tggttcaaag gtttgtgcgt tcttaatctg tacatttttt 001760
001761 aatatatatt ggcaaattgc cccatagaga ttgtatccat ttttctctcc ttagcaatgt gtgagagtgc ctgtttcccc 001840
001841 acaactcaca aaaggtggtt tctagctgtg attttaattc gtctcttata ttgatttttt aaaatttgta tttatattat 001920
001921 tattattatt atttgagaca gggtcttgtt ctgttgccca gactggagtg cagtggcact atcacagctc attgcaccct 002000
002001 caacgtcctg ggctcaagca gtgcttccac ctcagcctcc caaatagttg gaagtacagg cacatgccaa cacacccggc 002080
002081 taattttaaa attttttgta gagatggggg tcactctatg ttgtctaggc tggtcttgaa ctcctggact caagaaatcc 002160
002161 tcccatcttg gcctccctaa gtgctgggat gacagacagg agctactacg cctggactgt gtcttttatt atgaatcaag 002240
002241 atgagtacct ttccatacag agaataattt gtaatttttt tcctgtgatt tatctgttct tgagttgtgt tcatttttct 002320
002321 gtGGTATGAT GGAAAACAGC CCTTTGTGAT ATATGTTACA CTTATTCTTT TTCAGTCTTT TTGTCGTTTG ACTTTGTTTA 002400
002401 TGGTATTTTG TTTTGTTTTT CTGTCTTACA GAAATTCATG ATTCATGTAT TTGGATTTAT CAGTCTTTTA TGGCTTCTAG 002480
002481 GTTTGGGGCC ATAATACACT CAGATTATTA AGTTATTTCT TTAATGGCTT TATTTTTATG GTTTTGTTTA TCTTTGCTTC 002560
002561 ATCTGGAATG TGTTTTTGTA TAAGGAGTGA AGTGGAAGTT TTGTCCCAAA ATCACTTTTA ATGAACACTC CTTCTTTTCT 002640
002641 ACACGATGTC ATTTGAAATG CCACATTTAT AAtttttttt tttgagacag agtcttgctc tgttgcccag gctggagtgc 002720
002721 agcggcacaa atctcagttc actgcaacct ccacctccca ggttcaagca attctcttgc ctcagcctcc tgagtagctg 002800
002801 ggattacagg tgcatgccac tacgcccggc taatttttgt atttttagta gagacggggt ttcgctatgt tggccaggct 002880
002881 ggtctggaac tcctgagctc aggcgatcca tctgcctctg cctcctaaag tgctgggatt acaggcaaga gccaccacat 002960
002961 ccggccCACA TTTATAATTT TCTAAATTCC CACATGCATA TGGGTTTCTG GATTCTCTGC TGCATATGGG tttctggatt 003040
003041 ctctgctcta ttccactgac ttttctgtta attttgattc accagaactg tgctgttttA CCATTTAGTA GGGTCAGTCC 003120
003121 Ttgtagggtc cagccccaca gggtcagtgg gttttcgccc catgtgtgga gacgagagat tgtagaaata aagacacaag 003200
003201 acaaagagat aaaagacagc tgggcctgcg ggaccactac caccaagatg cggagaccag tagtggcccg aaatgccagg 003280
003281 ctgcgctgat atttattgga tacaagacaa agggacaggg taaggagtgt gagccatctc caatgatagg taaggtcaca 003360
003361 tgggtcacgt gtccactgga cagggggccc ttccctgcct ggaagccgag gcagagagag agggagagag gagacagctt 003440
003441 gtgccattat ttctgcatat cagagacttt tagtactctc agtaatttgc tactgctatc taaaaggcag agtcaggtgt 003520
003521 acaggatgga acatgaaagc agactaggag cgtgaccagt gaagcacagc atcacaggga gatggttagg cctagtcagg 003600
003601 ccctccacaa gaggtaaagg agtagagttg tctctaaact cccctgggga aagggagact ccctttccca gtctgctaag 003680
003681 tagcaggtgt ttttcctgga cagcgacgct accgctagac catggtctgc ttggcaacgg gcgtcttccg agacgctggt 003760
003761 gttaccgcta gaccaaggag ccctctggtg gccctgtctg ggcataacag aaggcttgca ctcttgtctt ctggtcactt 003840
003841 ctcactatgt cccctcagct cctatctctg tatggcctgg tttttcctag gttatgatta tagagtaagg attattataa 003920
003921 tattggaata aagactaatt gctacaaact aatgattaat gatattcata tataatatct atgatctata gtataactat 004000
004001 tcttatttta tatattttat tatactggaa cagctcatgc cctcggtctc ttgcctcagc acctaggtgg cttgccaccc 004080
004081 acaAGTCCTC TCTTGTTACT CTTTTGTTTT TTTAAACATT TTTCTACTCA TTCTTGAATT ATTATTTTTC CTCAGTGaat 004160
004161 aataatagca cttatttggc atttgttata tgacaggtac tattctcagt gctctatgta tcttcattta atcctcctga 004240
004241 cagccctacc aggcagatac tattatcccc tttcatggaa gaggcatctg agacagagag gttaagtaac ttgtgcaagg 004320
004321 atacacagct aataagcaac aagcctggat gagaacccag aaaggctggg tctaTGGGTA AAACCACAAT TCCTTATCAT 004400
004401 CTTTTCACAT GAGCTTTAGC TACAGCTAGT CTGGCTCTAA TTTTAGGAGG T
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Predicted Small Protein

Name NONHSAT004550_smProtein_2813:3058
Length 82
Molecular weight 9499.0894
Aromaticity 0.16049382716
Instability index 70.3740740741
Isoelectric point 8.23736572266
Runs 10
Runs residual 0.0187229171777
Runs probability 0.0632308779367
Amino acid sequence MPLRPANFCIFSRDGVSLCWPGWSGTPELRRSICLCLLKCWDYRQEPPHPAHIYNFLNSH
MHMGFWILCCIWVSGFSALFH
Secondary structure LLLLLLLEEEEELLLEEELLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHH
HHHHHHHHEEEELLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT
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