NONHSAT004625
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004625 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4401 nt |
Genomic location |
chr1+:95392928..95397328 |
Exon number |
1 |
Exons |
95392928..95397328 |
Genome context |
|
Sequence |
000001 CTGGGGGCTT CCCAGCCACA GGCCATTCAC GTCAACCTCC AGGCATCCTC CGCGGCGGGC CGGACCGGGC CGGCGGAGGG 000080
000081 GAGCGGAAGC CCACCGGGGC TGGCCCGCCG CTGACCCGCC GCCTCCGTCT GCCTCCTCCC GGGCTCTGGG CCCAGCGCGC 000160 000161 CCAGATGCCG GGCAGGACCC CTCCGCCCGC TGCTGGAACA CCAATAGCAG CGTTGGAGCC TCTGGGCCGG AGGAACTGGG 000240 000241 GCCTCCACCG ACACCTGCTT CTTCCCTCAC CTCGCAGCCT TCCACACCTG TTGATCTGAC CTCTGCCCCG CTGCCGCCCA 000320 000321 GGAGTAACCT AAGGCTTTTG GCCTGATTCG AGCTCACTCC GTCTAAACCT CTAAATGCGG TGCGAAAAAA TCCTGGGGAA 000400 000401 TGTGCCATGC AAAGCCTGGG CATTTCAAGT GCTTTTCTGG ATTCGCATCA ACTCCTCTTT ACAGGCATCT TTATCCGGAA 000480 000481 TTCAGCTCGT CCCAAACCCC ACGTGGTGTA GCTCTGCTTG TGTTTTTGAA TCCCGGGGCC TCTTTGAATC AGAAGCCCTT 000560 000561 TGTATAGAGA TAAGTATCCT TTAGGCCAGA ATCAGCCTCC ATTTTTTTCG CAGTCCCATT TCCTACCCGT AATACTTTCT 000640 000641 TCTGATTTTA AAGCCATTTG ATAGAGAAGG GACAGGGAAC AGAACCTTCG CCCCCCGCCT GAGCAGCTGG TAGACTAGAT 000720 000721 ATCTTCCAAA CATTATCTCA TTTACTTCCC TGGAGTTACA AATAGGTAGA TTTCATGTCC GTTGAGGGGT GAGAAAGCTG 000800 000801 AAACTTTGAG ACTTAAGAAT CCTGGCCGAG GTCAGCCTCC TCCGAAGCTT CATCTCTTGC CACCACTTTC TGGTGCACAC 000880 000881 CTAGGACAGA TTTCAATCCC TGAGATCCCA GGATGAAACC TATGTTTGCC AAATACCAGC TACTGTGCCA GAAGAGATCA 000960 000961 TGGAACCAGG TGTGGAAAGC TGCTTGAGAA GAGGAGCCAA AACATCATAG TTGAACCGTC CTGGAATAGA AGTGAGTAAG 001040 001041 GTGAAccagg tgtggtggct catgcctgta atcctagcac tttgggagac cgaggtggga ggattgcttg aggcctggag 001120 001121 ttcaggaaca tcctgggcaa catagcaaga tcctgtctct acaaaaaaTC CAAAGttttt ttaaattaaa aaaaaaaaGT 001200 001201 GAGTAAGGCA GCTTGAACCG GAAATGCACA AAACTGCTAT CCAGTTTGCA AGGCTTTTCC CAATGACTTT GAGGGATGGA 001280 001281 ACCTGAAGGA AGCGGGAGGA GGCAAATAGG GAGGAAAGTG AAATGATTTA TAAATGACTT GCTAATTTTG TCCAAAGGGA 001360 001361 GTAATGATAA TTAGGGCAtt cttcccacac gaagatgaca caattgaccc aatatcattg aggctaacag tttgggctgt 001440 001441 ttttccagta gtATGACAGT GACGGTGTGT CAACCGCAGG ACCTCACCCA CATTTCTTTG GGACCTAGGA GTGTGGGAAA 001520 001521 TAGCAGCCAG ATTTGAGGTA CAAATCATGG TGTCCAGCCT GCAAAGCCTT TTTGCAGCAA TCTAAGCCTG ACTGCTCCTG 001600 001601 TTGTATGCTC AAAGTCATTT TAATCTACTT TAGCTTATTG TAAAATGTTC AAGAATTGTA TTTTGTCTTG AAAACCATGA 001680 001681 ATTTTATTGT TTAGggggag ttatttttta aggagtgcag gatttcagtt ttggatgatg aaaaagtttt gaagatgggt 001760 001761 agtgacagtg gtcacacaac attgtaaatg tacttaatgc cattgtacac ttaCGTGACT TTAAAGTAAA CATGAAATTT 001840 001841 TCTACATTTG TTTGTTTGAT CAACTGTTAT CCTCCCTAAG GTACTTGAAG TTCTTTCTGA CATTGCCACT GGAACTTACT 001920 001921 ATTTAAATAT TGTTGGTCCT CTTGGATTCC ATCAGTACTC CAGAGACTTC CTTCGTTTCT AATTTAACTC ATTGTGTAAG 002000 002001 AATACGTAAT GCTGTTGTTA GCACTAGGGA ATGTATCTGA GTCTCATGCA CCAAAGtgtg ttagcagcag caaatctgta 002080 002081 tgggtctgca gcaacctcaa ttcttgcctc ctccaaagaa agaattctac cgagaggcat aaggcagagg gagaggccaa 002160 002161 ggcacgtttt agagcaggag tgaaagttag agcaagaatg aaacgaagta atgtacactt ggaagagggc caggcgggca 002240 002241 acttgagaga ttcaagtgcg ctgcttgacc tttgacttgg ggttttatac attggcatgc ttccaggggg ttgtgtccct 002320 002321 tttcccctga ttcttccctt gaggtgggct gtctgcatgt gcagtggcct gccagcactt gggagggacc acatgctcag 002400 002401 tgtgttaact gaggttgtac gcatgctcac ttgaggcatt cttcgcttac tagtcaagtg ttcctagaag aaggtcatat 002480 002481 atgagtacca gttaaatgcc accattttgc ctcttagttc acacctgtga gcccactcag ccaactccta agatcctatc 002560 002561 cagaagctgc tgatcaccag ttgtaggtat tttctagcca ttgggagact gcctttccct ggtgccggct gtgaccagtt 002640 002641 attattttag agagacagtt taacaactgc ctgaccacct gatggttgcg tgacattcct ggtgggagcg gggagccctc 002720 002721 tcctgctctg cttgtgtctg actacctacT GTGGCACTAT AGAATCAAAT GAGAAAAACT TAAAATTTGG GACAAtttta 002800 002801 acagctttat tgaagtatat tgatataaca aagtatattt aaagtgttca gtttgataca cacatataca catagataca 002880 002881 cctatttaaa aacccatcac cacaacagac aaaggacata ttcatcatac ccaaaagttt cctcatgtag cccctccctc 002960 002961 ccagtcttcc ttacctctcc accccaccag gcaacccctg atatgcttta tgtaactata cattaatttg tatttcctag 003040 003041 aattttatat aattggaatc acacattgta tattctgttt tatctggctt ctttcactca gcaaaattat tacgagattc 003120 003121 actgacgttg tagcatgtat cattagttca ttccttttat tactgagtag tattcaactg tagggataca ccagtgattt 003200 003201 tacccattcc cttattgatg aacattttgg ttgtttctag attttggcta ttgcaaataa agctgctatg aacattcatg 003280 003281 tacaagtctt tgtatggaca tatgctttaa tttctctccc ataaatacct ataaatggaa tggctggatc aagtgaaaga 003360 003361 tgtatatttc actttttaag aaactgcaaa ctttttccaa aatgattgta ccattttaca ttcccaccag tgcgtatgag 003440 003441 agttccagtt cctctgcttc ctcaccaaca gttggtaggt cagttttttt aaatttagtc attcttatag atgtggagta 003520 003521 tggtatctca ttatggtttt aatttgaatt cccttaatac gtaatgatgt tgggcttctt ttcatgtatt tatttgccat 003600 003601 ctgtgtatct ttttcatgaa atgtttgttc agatcttttg cctattttta ttggattgtg tgttttctta ttatggtatt 003680 003681 tAACTTGTCA CTGTTAGGAT ACATTTCAAA AATCCTGACC AAGTTCTAAC AGTAGAATGT GTCAGTAAAT GCTCAGTTTA 003760 003761 AGTAAAATGT CACATTGCAA ACTAACTACC AGGGTGTGGC CCAGCAATCT TAAGTACTTT CCCTGGAAGT TTCTGTAATA 003840 003841 TGCAGAACAC TTTCAATTGA AATAAATGCT GTTAAGGAGG TCAACTCAAC CTTTCCAAAT TTTTATTAAT TAAAAGCAGT 003920 003921 TGTTGGAGAG TTGTAGAAAA GTATTTTTTC ACAGAGGCAA ATTTGTGGGT CATATTGCCA TACATCTTGC CACGAAAATA 004000 004001 ATAACATAAA GTGTTTTGAA GAATTCACCC TGTAAATCtg tcagaggcat gtgaaccaaa gcaactccat cttgaatagg 004080 004081 ggctaggtaa aataaggctg agacctgcta ggctgcattc ccagacggtt aaggcattct aagtcacaga atgagttagg 004160 004161 aggtcagcac aaggtacagg tcataaagac tttgctgata aaacaggttt cagtaaagaa gccagccaaa acccaccaaa 004240 004241 accaaaatgg cggcaagaat gacctctggt cgtcctcact gctacactcc caccagcgcc atgacagttt gcaaatgcca 004320 004321 tggcaacatc aggaagttgc cctatatgat ctaaaaaaag gaggcatgaa taagccaccc cttgtttagc gtatcatcaa 004400 004401 g |
Predicted Small Protein
Name | NONHSAT004625_smProtein_374:583 |
Length | 70 |
Molecular weight | 7705.9944 |
Aromaticity | 0.101449275362 |
Instability index | 43.9536231884 |
Isoelectric point | 6.08782958984 |
Runs | 13 |
Runs residual | 0.0490744726647 |
Runs probability | 0.0460709578358 |
Amino acid sequence | MRCEKILGNVPCKAWAFQVLFWIRINSSLQASLSGIQLVPNPTWCSSACVFESRGLFESE ALCIEISIL |
Secondary structure | LLHHHHLLLLLHHHHHHHHHHHHHHLHHHHHLLLLLEELLLLLLLLLLEEEELLLLLLLL EEEEEEEEL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLL |
PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooo ooooooooo |