NONHSAT004625

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT004625

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4401 nt

Genomic location

chr1+:95392928..95397328

Exon number

1

Exons

95392928..95397328

Genome context

Sequence
000001 CTGGGGGCTT CCCAGCCACA GGCCATTCAC GTCAACCTCC AGGCATCCTC CGCGGCGGGC CGGACCGGGC CGGCGGAGGG 000080
000081 GAGCGGAAGC CCACCGGGGC TGGCCCGCCG CTGACCCGCC GCCTCCGTCT GCCTCCTCCC GGGCTCTGGG CCCAGCGCGC 000160
000161 CCAGATGCCG GGCAGGACCC CTCCGCCCGC TGCTGGAACA CCAATAGCAG CGTTGGAGCC TCTGGGCCGG AGGAACTGGG 000240
000241 GCCTCCACCG ACACCTGCTT CTTCCCTCAC CTCGCAGCCT TCCACACCTG TTGATCTGAC CTCTGCCCCG CTGCCGCCCA 000320
000321 GGAGTAACCT AAGGCTTTTG GCCTGATTCG AGCTCACTCC GTCTAAACCT CTAAATGCGG TGCGAAAAAA TCCTGGGGAA 000400
000401 TGTGCCATGC AAAGCCTGGG CATTTCAAGT GCTTTTCTGG ATTCGCATCA ACTCCTCTTT ACAGGCATCT TTATCCGGAA 000480
000481 TTCAGCTCGT CCCAAACCCC ACGTGGTGTA GCTCTGCTTG TGTTTTTGAA TCCCGGGGCC TCTTTGAATC AGAAGCCCTT 000560
000561 TGTATAGAGA TAAGTATCCT TTAGGCCAGA ATCAGCCTCC ATTTTTTTCG CAGTCCCATT TCCTACCCGT AATACTTTCT 000640
000641 TCTGATTTTA AAGCCATTTG ATAGAGAAGG GACAGGGAAC AGAACCTTCG CCCCCCGCCT GAGCAGCTGG TAGACTAGAT 000720
000721 ATCTTCCAAA CATTATCTCA TTTACTTCCC TGGAGTTACA AATAGGTAGA TTTCATGTCC GTTGAGGGGT GAGAAAGCTG 000800
000801 AAACTTTGAG ACTTAAGAAT CCTGGCCGAG GTCAGCCTCC TCCGAAGCTT CATCTCTTGC CACCACTTTC TGGTGCACAC 000880
000881 CTAGGACAGA TTTCAATCCC TGAGATCCCA GGATGAAACC TATGTTTGCC AAATACCAGC TACTGTGCCA GAAGAGATCA 000960
000961 TGGAACCAGG TGTGGAAAGC TGCTTGAGAA GAGGAGCCAA AACATCATAG TTGAACCGTC CTGGAATAGA AGTGAGTAAG 001040
001041 GTGAAccagg tgtggtggct catgcctgta atcctagcac tttgggagac cgaggtggga ggattgcttg aggcctggag 001120
001121 ttcaggaaca tcctgggcaa catagcaaga tcctgtctct acaaaaaaTC CAAAGttttt ttaaattaaa aaaaaaaaGT 001200
001201 GAGTAAGGCA GCTTGAACCG GAAATGCACA AAACTGCTAT CCAGTTTGCA AGGCTTTTCC CAATGACTTT GAGGGATGGA 001280
001281 ACCTGAAGGA AGCGGGAGGA GGCAAATAGG GAGGAAAGTG AAATGATTTA TAAATGACTT GCTAATTTTG TCCAAAGGGA 001360
001361 GTAATGATAA TTAGGGCAtt cttcccacac gaagatgaca caattgaccc aatatcattg aggctaacag tttgggctgt 001440
001441 ttttccagta gtATGACAGT GACGGTGTGT CAACCGCAGG ACCTCACCCA CATTTCTTTG GGACCTAGGA GTGTGGGAAA 001520
001521 TAGCAGCCAG ATTTGAGGTA CAAATCATGG TGTCCAGCCT GCAAAGCCTT TTTGCAGCAA TCTAAGCCTG ACTGCTCCTG 001600
001601 TTGTATGCTC AAAGTCATTT TAATCTACTT TAGCTTATTG TAAAATGTTC AAGAATTGTA TTTTGTCTTG AAAACCATGA 001680
001681 ATTTTATTGT TTAGggggag ttatttttta aggagtgcag gatttcagtt ttggatgatg aaaaagtttt gaagatgggt 001760
001761 agtgacagtg gtcacacaac attgtaaatg tacttaatgc cattgtacac ttaCGTGACT TTAAAGTAAA CATGAAATTT 001840
001841 TCTACATTTG TTTGTTTGAT CAACTGTTAT CCTCCCTAAG GTACTTGAAG TTCTTTCTGA CATTGCCACT GGAACTTACT 001920
001921 ATTTAAATAT TGTTGGTCCT CTTGGATTCC ATCAGTACTC CAGAGACTTC CTTCGTTTCT AATTTAACTC ATTGTGTAAG 002000
002001 AATACGTAAT GCTGTTGTTA GCACTAGGGA ATGTATCTGA GTCTCATGCA CCAAAGtgtg ttagcagcag caaatctgta 002080
002081 tgggtctgca gcaacctcaa ttcttgcctc ctccaaagaa agaattctac cgagaggcat aaggcagagg gagaggccaa 002160
002161 ggcacgtttt agagcaggag tgaaagttag agcaagaatg aaacgaagta atgtacactt ggaagagggc caggcgggca 002240
002241 acttgagaga ttcaagtgcg ctgcttgacc tttgacttgg ggttttatac attggcatgc ttccaggggg ttgtgtccct 002320
002321 tttcccctga ttcttccctt gaggtgggct gtctgcatgt gcagtggcct gccagcactt gggagggacc acatgctcag 002400
002401 tgtgttaact gaggttgtac gcatgctcac ttgaggcatt cttcgcttac tagtcaagtg ttcctagaag aaggtcatat 002480
002481 atgagtacca gttaaatgcc accattttgc ctcttagttc acacctgtga gcccactcag ccaactccta agatcctatc 002560
002561 cagaagctgc tgatcaccag ttgtaggtat tttctagcca ttgggagact gcctttccct ggtgccggct gtgaccagtt 002640
002641 attattttag agagacagtt taacaactgc ctgaccacct gatggttgcg tgacattcct ggtgggagcg gggagccctc 002720
002721 tcctgctctg cttgtgtctg actacctacT GTGGCACTAT AGAATCAAAT GAGAAAAACT TAAAATTTGG GACAAtttta 002800
002801 acagctttat tgaagtatat tgatataaca aagtatattt aaagtgttca gtttgataca cacatataca catagataca 002880
002881 cctatttaaa aacccatcac cacaacagac aaaggacata ttcatcatac ccaaaagttt cctcatgtag cccctccctc 002960
002961 ccagtcttcc ttacctctcc accccaccag gcaacccctg atatgcttta tgtaactata cattaatttg tatttcctag 003040
003041 aattttatat aattggaatc acacattgta tattctgttt tatctggctt ctttcactca gcaaaattat tacgagattc 003120
003121 actgacgttg tagcatgtat cattagttca ttccttttat tactgagtag tattcaactg tagggataca ccagtgattt 003200
003201 tacccattcc cttattgatg aacattttgg ttgtttctag attttggcta ttgcaaataa agctgctatg aacattcatg 003280
003281 tacaagtctt tgtatggaca tatgctttaa tttctctccc ataaatacct ataaatggaa tggctggatc aagtgaaaga 003360
003361 tgtatatttc actttttaag aaactgcaaa ctttttccaa aatgattgta ccattttaca ttcccaccag tgcgtatgag 003440
003441 agttccagtt cctctgcttc ctcaccaaca gttggtaggt cagttttttt aaatttagtc attcttatag atgtggagta 003520
003521 tggtatctca ttatggtttt aatttgaatt cccttaatac gtaatgatgt tgggcttctt ttcatgtatt tatttgccat 003600
003601 ctgtgtatct ttttcatgaa atgtttgttc agatcttttg cctattttta ttggattgtg tgttttctta ttatggtatt 003680
003681 tAACTTGTCA CTGTTAGGAT ACATTTCAAA AATCCTGACC AAGTTCTAAC AGTAGAATGT GTCAGTAAAT GCTCAGTTTA 003760
003761 AGTAAAATGT CACATTGCAA ACTAACTACC AGGGTGTGGC CCAGCAATCT TAAGTACTTT CCCTGGAAGT TTCTGTAATA 003840
003841 TGCAGAACAC TTTCAATTGA AATAAATGCT GTTAAGGAGG TCAACTCAAC CTTTCCAAAT TTTTATTAAT TAAAAGCAGT 003920
003921 TGTTGGAGAG TTGTAGAAAA GTATTTTTTC ACAGAGGCAA ATTTGTGGGT CATATTGCCA TACATCTTGC CACGAAAATA 004000
004001 ATAACATAAA GTGTTTTGAA GAATTCACCC TGTAAATCtg tcagaggcat gtgaaccaaa gcaactccat cttgaatagg 004080
004081 ggctaggtaa aataaggctg agacctgcta ggctgcattc ccagacggtt aaggcattct aagtcacaga atgagttagg 004160
004161 aggtcagcac aaggtacagg tcataaagac tttgctgata aaacaggttt cagtaaagaa gccagccaaa acccaccaaa 004240
004241 accaaaatgg cggcaagaat gacctctggt cgtcctcact gctacactcc caccagcgcc atgacagttt gcaaatgcca 004320
004321 tggcaacatc aggaagttgc cctatatgat ctaaaaaaag gaggcatgaa taagccaccc cttgtttagc gtatcatcaa 004400
004401 g
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Predicted Small Protein

Name NONHSAT004625_smProtein_374:583
Length 70
Molecular weight 7705.9944
Aromaticity 0.101449275362
Instability index 43.9536231884
Isoelectric point 6.08782958984
Runs 13
Runs residual 0.0490744726647
Runs probability 0.0460709578358
Amino acid sequence MRCEKILGNVPCKAWAFQVLFWIRINSSLQASLSGIQLVPNPTWCSSACVFESRGLFESE
ALCIEISIL
Secondary structure LLHHHHLLLLLHHHHHHHHHHHHHHLHHHHHLLLLLEELLLLLLLLLLEEEELLLLLLLL
EEEEEEEEL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLL
PiMo iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooo
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