NONHSAT004782
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004782 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2875 nt |
Genomic location |
chr1+:100719459..100729383 |
Exon number |
2 |
Exons |
100719459..100719538,100726589..100729383 |
Genome context |
|
Sequence |
000001 GTGACGTTTA CCAAAATGCA AGATGCTAAT TAATGAAGGT CTTAAATTAC TTGTTTGGCT CCTTGGTGTG CCTGACTGGT 000080
000081 ttcaacttct tcctggttta gtcttgggag agtgtatgtg tcgaggaatt tatccatttc ttctagattc cttttgggtt 000160 000161 ttctatgtag acagtctcat cattaagatg atatcaaaat taaggtgttg tttttgcctg tcctatctta tgtctttttt 000240 000241 ctttcttgta aaatctgtct aggacttcta ccatctgttt aaaaaaagcc ataatagtgg gcattcttat cttgttaata 000320 000321 atattaaaag gaaggagcct aatattttac tactaaacat gatgtttgct tgactcccag tagggccgaa aaagaaaatg 000400 000401 aagtttgctg ttgaattttt tagatgccat ttgttatggt ttggctctgt gtccccaccc aaatctcatg tcaagttgta 000480 000481 atccccaagt gtcaggggag ggacctggta ggaggtgatt ggatcatgga gaaatccctt gctgttcttg tgatagtgtg 000560 000561 ttctcacaag atctggttgt tgaaaagtgt gtggcactta aaagtgtgta cctcgccccc atctcctctc tctttctctc 000640 000641 ctgccaccat gtaagtacat gccttgcttc ccctttgcct tctgctatga ttataagttt tctgaggcct ccccagccat 000720 000721 gcagaactgt gagtgaatga aatctctttt ctttataaat tacccagttt caggtagttc tttatagcca tgtgaaatgg 000800 000801 actaatatac cattaataac actaagagag ttttatccct agctttgctt gattttgttt catcataaat ggatcttttt 000880 000881 ttttttccaa tccttttcct gcatctattg gtgtgatctt aggtttttga tacatcagca tatttttcca attttaaatt 000960 000961 gatcttcaat cccaacttgg ttataatgtg ttgtatttta caaacattgt tgaatttgat tgtaaatatt ttgactgaga 001040 001041 ctggtgcatc taaattataa ataaagttga cctataattt ttcttcccca agttgtcttt ggttttggca tcaagatcat 001120 001121 actagcctta taaaatgtac tggggagGTC TATTTCATGA GTTCTGGAGG GAAACATGTA TAATAACTGA AGGTTTtata 001200 001201 tatatatata tctgtgtata tatatctgta tatatatctt atgtatatat atatctgtat atatatgtac atGGCCAATT 001280 001281 ATGTATGTAt ataattgccc ttagatcaag tttattagtt gttttattag ttgtcttgtc tttcctaaat tttcatttgc 001360 001361 ttgatctata aataagtgag ctaaaacttc acaatatggt agtggattca ccagtttctt caatttctga cttacatact 001440 001441 ttgaagctat ttattacaca caaaggtttg aataactatt ttcctgggga acacaatttt ttattatttt gtagtgactc 001520 001521 tttttggtca atgataatgc tttttgtatt aaagtctaat ttaatacaaa atacaggtat accacgaata taggtatacc 001600 001601 acctttcttt ttgttggcat ttatacggca tctcttttcc atctttttat tttcaactcc tcacgatcct taatgttttt 001680 001681 ggtgcatctc ttgtaaatgg cacttttttt tttcaaccaa tctctggctt ttttattttt taaacttgtg ggtatgtgtc 001760 001761 atccaacaat ctctggcttt tcatcagaaa gtttatttac tttcattgtt actattgata tatatgaatt tatttctatt 001840 001841 ttgttacttt agtgctttct tttcatcctc ttttttttta atgctcatta tgatattagg tttttgttca tttaatctgt 001920 001921 gttttcctgt tagtccattt tttcctttgg ctggattaga agttatacac tttcatggtt atccttgaaa ctttaccttg 002000 002001 cgtacttaaa gacttgaatt atgtcaactc tattaattga tatcttaact acaaagagag accttagaat tctttaactt 002080 002081 tgtcatccac ctctcgtctt acatactttt gttgtctggt gttatttcat gtaatgtttg ctcagattca actatgtgtt 002160 002161 tacaatttct ttgcccatca cttctatctc agactctcct tctgaagtaa tttttctttc tgaagtacat cttttagaac 002240 002241 ttcctttaaa aagtgtaggt agatgttaaa ttcagtttcc atgtacctgg aaattatttt atttctatac tttaattctt 002320 002321 gaaagataat tttgctgagt gcccaattct aggttgatgg ttattttctg ccagcattct gaatgtacaa ttctactctt 002400 002401 tctgacttcc actgttttat tgaggaatca attattggtc tGTCATTTGT CATTAAAATA ACCAAggatt taacccaact 002480 002481 ctgccacttt attgttctgt catcttggca ggtcacttcc aattccctag gcctcagtcc ttcattaacc aaagagagat 002560 002561 aagagcacca acctcacagc tttgttatga acattaagag agatcatgta tatgaaagca ctacacaagt gcttattatt 002640 002641 accacaatta gcTCATCTCT ACATTATATT ACTGTCTTGT TCTTTTCCCC CTACCACTGG AAATAGTTAG AATGGGGCAA 002720 002721 ATGGGTCATA GCTAGGAATT CATAGCCAAA ATTAGAAATA AAAAGGCGAG GCTTCTTCTG GGAATGTTAA GTTTCTGTAA 002800 002801 TAAGAATCTA AGATGtgttg cgggaagtca gggaccccga acggagggac cggctggagc cacggcagag gaaca |
Predicted Small Protein
Name | NONHSAT004782_smProtein_1823:1987 |
Length | 55 |
Molecular weight | 6259.4655 |
Aromaticity | 0.277777777778 |
Instability index | 42.0759259259 |
Isoelectric point | 5.93890380859 |
Runs | 6 |
Runs residual | 0.0515808491418 |
Runs probability | 0.0101424954366 |
Amino acid sequence | MNLFLFCYFSAFFSSSFFLMLIMILGFCSFNLCFPVSPFFPLAGLEVIHFHGYP |
Secondary structure | LLEEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEELLLLLL |
PRMN | LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToo |