NONHSAT004782

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT004782

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2875 nt

Genomic location

chr1+:100719459..100729383

Exon number

2

Exons

100719459..100719538,100726589..100729383

Genome context

Sequence
000001 GTGACGTTTA CCAAAATGCA AGATGCTAAT TAATGAAGGT CTTAAATTAC TTGTTTGGCT CCTTGGTGTG CCTGACTGGT 000080
000081 ttcaacttct tcctggttta gtcttgggag agtgtatgtg tcgaggaatt tatccatttc ttctagattc cttttgggtt 000160
000161 ttctatgtag acagtctcat cattaagatg atatcaaaat taaggtgttg tttttgcctg tcctatctta tgtctttttt 000240
000241 ctttcttgta aaatctgtct aggacttcta ccatctgttt aaaaaaagcc ataatagtgg gcattcttat cttgttaata 000320
000321 atattaaaag gaaggagcct aatattttac tactaaacat gatgtttgct tgactcccag tagggccgaa aaagaaaatg 000400
000401 aagtttgctg ttgaattttt tagatgccat ttgttatggt ttggctctgt gtccccaccc aaatctcatg tcaagttgta 000480
000481 atccccaagt gtcaggggag ggacctggta ggaggtgatt ggatcatgga gaaatccctt gctgttcttg tgatagtgtg 000560
000561 ttctcacaag atctggttgt tgaaaagtgt gtggcactta aaagtgtgta cctcgccccc atctcctctc tctttctctc 000640
000641 ctgccaccat gtaagtacat gccttgcttc ccctttgcct tctgctatga ttataagttt tctgaggcct ccccagccat 000720
000721 gcagaactgt gagtgaatga aatctctttt ctttataaat tacccagttt caggtagttc tttatagcca tgtgaaatgg 000800
000801 actaatatac cattaataac actaagagag ttttatccct agctttgctt gattttgttt catcataaat ggatcttttt 000880
000881 ttttttccaa tccttttcct gcatctattg gtgtgatctt aggtttttga tacatcagca tatttttcca attttaaatt 000960
000961 gatcttcaat cccaacttgg ttataatgtg ttgtatttta caaacattgt tgaatttgat tgtaaatatt ttgactgaga 001040
001041 ctggtgcatc taaattataa ataaagttga cctataattt ttcttcccca agttgtcttt ggttttggca tcaagatcat 001120
001121 actagcctta taaaatgtac tggggagGTC TATTTCATGA GTTCTGGAGG GAAACATGTA TAATAACTGA AGGTTTtata 001200
001201 tatatatata tctgtgtata tatatctgta tatatatctt atgtatatat atatctgtat atatatgtac atGGCCAATT 001280
001281 ATGTATGTAt ataattgccc ttagatcaag tttattagtt gttttattag ttgtcttgtc tttcctaaat tttcatttgc 001360
001361 ttgatctata aataagtgag ctaaaacttc acaatatggt agtggattca ccagtttctt caatttctga cttacatact 001440
001441 ttgaagctat ttattacaca caaaggtttg aataactatt ttcctgggga acacaatttt ttattatttt gtagtgactc 001520
001521 tttttggtca atgataatgc tttttgtatt aaagtctaat ttaatacaaa atacaggtat accacgaata taggtatacc 001600
001601 acctttcttt ttgttggcat ttatacggca tctcttttcc atctttttat tttcaactcc tcacgatcct taatgttttt 001680
001681 ggtgcatctc ttgtaaatgg cacttttttt tttcaaccaa tctctggctt ttttattttt taaacttgtg ggtatgtgtc 001760
001761 atccaacaat ctctggcttt tcatcagaaa gtttatttac tttcattgtt actattgata tatatgaatt tatttctatt 001840
001841 ttgttacttt agtgctttct tttcatcctc ttttttttta atgctcatta tgatattagg tttttgttca tttaatctgt 001920
001921 gttttcctgt tagtccattt tttcctttgg ctggattaga agttatacac tttcatggtt atccttgaaa ctttaccttg 002000
002001 cgtacttaaa gacttgaatt atgtcaactc tattaattga tatcttaact acaaagagag accttagaat tctttaactt 002080
002081 tgtcatccac ctctcgtctt acatactttt gttgtctggt gttatttcat gtaatgtttg ctcagattca actatgtgtt 002160
002161 tacaatttct ttgcccatca cttctatctc agactctcct tctgaagtaa tttttctttc tgaagtacat cttttagaac 002240
002241 ttcctttaaa aagtgtaggt agatgttaaa ttcagtttcc atgtacctgg aaattatttt atttctatac tttaattctt 002320
002321 gaaagataat tttgctgagt gcccaattct aggttgatgg ttattttctg ccagcattct gaatgtacaa ttctactctt 002400
002401 tctgacttcc actgttttat tgaggaatca attattggtc tGTCATTTGT CATTAAAATA ACCAAggatt taacccaact 002480
002481 ctgccacttt attgttctgt catcttggca ggtcacttcc aattccctag gcctcagtcc ttcattaacc aaagagagat 002560
002561 aagagcacca acctcacagc tttgttatga acattaagag agatcatgta tatgaaagca ctacacaagt gcttattatt 002640
002641 accacaatta gcTCATCTCT ACATTATATT ACTGTCTTGT TCTTTTCCCC CTACCACTGG AAATAGTTAG AATGGGGCAA 002720
002721 ATGGGTCATA GCTAGGAATT CATAGCCAAA ATTAGAAATA AAAAGGCGAG GCTTCTTCTG GGAATGTTAA GTTTCTGTAA 002800
002801 TAAGAATCTA AGATGtgttg cgggaagtca gggaccccga acggagggac cggctggagc cacggcagag gaaca
[back to top]

Predicted Small Protein

Name NONHSAT004782_smProtein_1823:1987
Length 55
Molecular weight 6259.4655
Aromaticity 0.277777777778
Instability index 42.0759259259
Isoelectric point 5.93890380859
Runs 6
Runs residual 0.0515808491418
Runs probability 0.0101424954366
Amino acid sequence MNLFLFCYFSAFFSSSFFLMLIMILGFCSFNLCFPVSPFFPLAGLEVIHFHGYP
Secondary structure LLEEEHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEELLLLLL
PRMN LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLL
PiMo oooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToo