NONHSAT004802
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004802 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2386 nt |
Genomic location |
chr1+:101121800..101171670 |
Exon number |
2 |
Exons |
101121800..101122360,101169841..101171670 |
Genome context |
|
Sequence |
000001 GGAGATGTTA ACCCTAGACA GGGAGGAATA TTGAAATGGG AGGAAAAGAG GATTGAAAGA AAAGGTAAAT GTGTAAGTTT 000080
000081 AGTGGCAAGA AATAGAAAAA ATTTCACAAG TGGTAAGGGA GAAATGGCCT GGAAGCAGAA GTAGGGAGTA AAGAAGATCA 000160 000161 TGACCTAACC TTTTGATCCA AAGGTTTTAT ATGGAATGTG GGGAAAAGAG CAGCTTTCAC TTGAGACATG GCTGCTGAGT 000240 000241 GTTTCTGGGG GAGCCAGGTT TCAATCAAGT CAAGGAGGGA AGGCTCAATG AAGAGGTCCA GGCTGTAGGG GGCTGGATCA 000320 000321 TGGGATGAGA GTTACAGAGG GCTCAGAGTG AAGATCTGGA AGGGAGGAGA GGAATGGGGA TTGGGTTGAG AAGGAAGAGA 000400 000401 ACGGGATACC AGTTGGGCTT AGGTCTTGGG TGGGGATCAA GGATAACAAG GTTTTTTCTA CTGTGTTTGG AGAGTTTCCC 000480 000481 TGGCTGAGAG TACACCAAGA AGTTGATCTC CTGGTTGGGG GAGTAGCACC TGACAATTCA ATATGTGGAT CCTTCTTGGA 000560 000561 AGTAACAGAG CATGCTGGCC AAAGAGTTAC TGCAAAAATG CTCCTAAATC AAGTAAACAA GGAAAAGAAC AGGAGCTGAT 000640 000641 AATGCTGTTG TTTGTTAATG CTCTTATTGT AAACTACTTT TTGGAAGATA AACCTTTTGT GGGAAGGCCA GGTACTAGGC 000720 000721 TCCTTCATTG CCTTAGATGA TCCAAGAGAC TGAGTAATCA AGATGGAGCA AAGAGCAAGA AGAGTGTCTG CAACACTTTT 000800 000801 AACTTCACAA AGAAGTTACC AGGCAGAAGG GGACAATTGC AGTGACTGAT TTTCCTGACA AAATGACAGT GTCTTGACAA 000880 000881 TGGCTATGAA GTCTTGATGA CCCTTAACAT CTCATAGAAC AAAGAAGTCA GTAGAGCAAG GTGAAAATGT TAAAGGAGGA 000960 000961 ATACAAGAAA CACAAAAGAA AGATGACAGG GTGACAAGTT AAACATAATC CACGGAATAA GAAACGTCAG AAGCCTCCTC 001040 001041 CGCAGTACAC CTACAAACAC CTGCCCTTTT GTTAATAGAT AAAAGAGAGC CTCTCACTGT AACTCCTTAA CTTCCTTGGT 001120 001121 GGAGGGAAAT CAGATGGCTA GAAAGTGTGG TGGTGCCTGG TGTGAAAGAC TTAACTGGGC AACACATCCA GCAAGCTGTA 001200 001201 TTTAACCTTC ATCAGTCTTT TATTTGTACC CCCTAAATCC TGGTTATTGA AGTCTTCCAA CTCCACCTCA TCTCTCCTTT 001280 001281 TATTGTCCCA CTCATAAAAT CTCATAGGAG TAAATAGATT AGACATATTT ACTGATTAGG GCAGACATAT TCCTCATATG 001360 001361 TACTGAGGAA GAGTGATAGG GGGATCACCT TGGCCTGAAA CCCTCTATCA GGAGCCAATT TTCAAGAAGA TAAGAAAATA 001440 001441 ATCAGCCACT TGTGATCTTC TTTCCTTAAT TATATGAGAT CCTATCCAAA TTTTCAATCC ACTGTCACTG ACCTCTGAGG 001520 001521 ACCTTTGATG CCTTTGACCT GGCTCTAGTG GAGTACCTTC CATTCTTCCA AATAGTCCCC CCATTTGCCT TGGCCTTAAA 001600 001601 TTCCACCATG AAGGGGGAGT CTTTTATTTT AAGCATTTCT TTTTATCTAA TAATAAAAGA TAGAGGAAAT AAGATAGTGG 001680 001681 GATTCGAAAT AACGTAACAC AAATTAATTA TTCATATCAG TTTCTCTACT AGAGGAAATG CAATAGTTGA TTAAGGATCA 001760 001761 GAGGAAGGAA AATCCTTCAA TGAAACATTG AAAGAAAGCT GAAGAATTTG TAGTGAGAGA AAACAATTAT CTTAACAAAC 001840 001841 ATTTTTATAT TATAATTCTT TTTCCCTTCT GGACATCAGA TGCAGATAAT TGAGTTCGTG ATTCAATTCG TGGGTCATTA 001920 001921 TCATCACTGG CCGCAGCAAG GCTTTATTTG TAAAAATTTT TTTCCATTTT ATTTCCGTTC CTCATTCCCA TTCCACCTCC 002000 002001 CCACAGGTAG CTCTTCTAAT ATATTAAATG TGTACCTTTT TGTTTGCATG TGTTCTTGCA AAATGCATAT TTTTGTGTAC 002080 002081 ATCAAATTTA CATAAATAAT ATCACATCAT AAAATTCAAT CCATTTTAGA TTTTATTTTC CTTGGACCAT ATTTTAAGAG 002160 002161 CCATGCATGT TGCTGTGTGT ACATATAATC CCTTGCCTCT AACCACTACA CAATGTGCAC ATTTTCCCTA CATACTCTCC 002240 002241 CAGTGATGTT GACCAATATT ACCTCCAGTT ATCGCACCCC AAATGATGCT GAAACCAATA TACATGTACA TGACCCTTAT 002320 002321 GGAACTGTGT GAGAATTACT TTGAACTCTA TGTGCAAGAG CAAAATTGCT GTTAATAAAG TTAAAA |
Predicted Small Protein
Name | NONHSAT004802_smProtein_542:739 |
Length | 66 |
Molecular weight | 7523.8923 |
Aromaticity | 0.107692307692 |
Instability index | 45.8261538462 |
Isoelectric point | 9.66265869141 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.037390331508 |
Amino acid sequence | MWILLGSNRACWPKSYCKNAPKSSKQGKEQELIMLLFVNALIVNYFLEDKPFVGRPGTRL LHCLR |
Secondary structure | LEEEELLLLLLLLHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLEE EEELL |
PRMN | - |
PiMo | - |