NONHSAT004930
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004930 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1779 nt |
Genomic location |
chr1+:106434361..106436139 |
Exon number |
1 |
Exons |
106434361..106436139 |
Genome context |
|
Sequence |
000001 GTGTCCAAGT CATTCCAGCA GTCATCTCCC AGTAGGGACT AACAGGGTCA TGGGTGTGAC CTGTCTGCGG CAGGCATAGG 000080
000081 CCTTCCTGCT GCTGTTACCC AGTCTTTAAG TATGCCAGCA TCTCTTAGGA AGGATGAACC AGGGTACTGC ACGCCTTGCT 000160 000161 AGTTGAATGA ATCTTGGAAC GAATTCTTCA TTGAATCAAA AAGGAGCTCA TAGTGCACGG TCTTCTGCTA GTACTTCTTC 000240 000241 CTATAATTTA CAGTCTATAT TTAACATTGG AAGTAGAGGT CCACTCCCTT TATCTTCTCA ACACTGTGGA GATGCAGACC 000320 000321 AGGCCAGTAA CATTTTGGCC AGCTTTGGTC TGTCTCCTAG AGACTTAGAT GAACTGAGTC GTTATCCAGA GGACAAGATG 000400 000401 ACTCCTGAGA ATTTTCCCCA AATCCTTCTA CAGCTTAAAA GGAGGAGAAC TGAAGAAGGC CCTACTTTGA GTAATGGTAG 000480 000481 AGATGACAGA TCTGCTGCAT AGGAGCCACC ATACAGAGTA CCTAGGGATG ATTCAGAAGA AAAAAAGGCA CTTTAGAAGA 000560 000561 GATAGTTTTG ATGATCATGG TCCTAGTCTC AACCTGGTGC TTGATTATGA TCATGGAAGT CATTCTCGAG AATCTGGCTA 000640 000641 TTATGACAGA ATGGATTATG AAGATGACAG ATTACGAGAT GGAAAAAAGG TGTAGGGATG ATTCTTTTTT TGGTGAGACC 000720 000721 TCGCGTAACT ATCATAAATT TGACAGTGAG TATGAAAGAA TGGGACTTGG TCATGGTCCT GACCCTTTAC AAGAGAGATC 000800 000801 TCTCTTTGAG AAAAAGAGGG GCGCTCCTCC AAGCAGCAAT ATTGAAGACT TTCATGGACT CTTACTGAAA GGTTATACCC 000880 000881 ATCTGTGCTC TATATGTGAT TTGCCAGTTC ATTCTAATGA GGAGTTGAGT CAACATATCA ATAGAGCAAG CCACAGTCGT 000960 000961 CGATGCCAGC TTCTTCTTGA AATCTACCCA GAATGGGATC CTGACAATGA TACAAAACAC ACAATGGGTG ATCCATTCAT 001040 001041 GTCTCAGCAG TCTACAAACC CAGCACCAGG AATTCTGGGA TCTCCACCTC CCTCGTTTCA TCTTGGAGGA CCAGCAATTG 001120 001121 GACCAAGAGG AAATCTGGGT GCTGGAAATG GAAACCTGCA AAGAACTAGA CACATACAAA ATGGCAGAGT GGAAACGAGC 001200 001201 AGAGTTGTTC ACATCATGGA TTTTCAGTGA GGGAAAAACT TGAGATACCA GCTATTACAG CTGGTAGAAC CATTTGGAGT 001280 001281 CATTTCAAAT CATCTGATTC TAAATAAAAT TAATGAGGCA TTTATTGAAA GGGCAACCAC AGAGGATGCT CAGGCTGCAG 001360 001361 TGGATTATTA TACAACCACA CCAGCATTAG TATTAGGCAA GCCAGTGAGA GTTCATTTAT CCCAGAAGTA TAAAAGAATA 001440 001441 AAGAAACCTG AAGGAAAGCC AGATCAGAAG TTTGATCGAA GGCAAGAGCT TGGATGTGTG ATACATCGCA GCAATTTGCC 001520 001521 CCATTCTGCC TATTCTGATA GTGCTGTTCT CAAGCTTGCT GAGCCTTATG GGAAAATAAA GAATTACATA TTGATGAGGA 001600 001601 TGAAAAGTCA GGCTTTTATT GAGATGGAGA CAAGAGAAGA TGCAATGGCA ATGGTTGACC ATTGTTTGAA AAAAGCCCTT 001680 001681 TAGTTTCAGG GGAGATGTGT GAAGGTAGAC CTGTCTGAGA AATATAAAAA TCTAGTACTG AGGATTCCAA ACAGAGGCAT 001760 001761 TGATTTACTG AAAAAAGAT |
Predicted Small Protein
Name | NONHSAT004930_smProtein_473:694 |
Length | 74 |
Molecular weight | 8837.6814 |
Aromaticity | 0.0958904109589 |
Instability index | 46.8931506849 |
Isoelectric point | 6.35357666016 |
Runs | 8 |
Runs residual | 0.0345558992488 |
Runs probability | 0.0336071365484 |
Amino acid sequence | MVEMTDLLHRSHHTEYLGMIQKKKRHFRRDSFDDHGPSLNLVLDYDHGSHSRESGYYDRM DYEDDRLRDGKKV |
Secondary structure | LEEHHHHHHHHLLHHHHHHHHHHHHHHLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLL LLLLLLLLLLLLL |
PRMN | - |
PiMo | - |