NONHSAT005011
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005011 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2617 nt |
Genomic location |
chr1+:109633403..109639553 |
Exon number |
2 |
Exons |
109633403..109633504,109637039..109639553 |
Genome context |
|
Sequence |
000001 CCGGATCGGG AAGTGTCAAG CGGGCGCTCC CCCATCTCCG CCGCTATTAC CACTGAACCC GGACCCCCTA CCCAGGTCCA 000080
000081 GGGCCAGCCG CCATGACGAA CGCCGCTGTG ATTGGAACCA GGCTGCATGC TGCTGTGGCA ATTGCTTGTG TTGTAATGGC 000160 000161 CTTTTACGTC CTGTTTATAA AATGAATTCC AAAGCACCCA AGTCATCAAC TGCCAACCAA GGGGACGGGG ATGAAGAACC 000240 000241 TGTTGGAGAC CTGAACCCAG TGTAGGAGAG TTCAGCTGAA ATCATCGGTC CCCAGGATGA CACCACAGCA TCTGCCCCTG 000320 000321 CTATATGTGG GGAAAACTCA TGGTCACGAA CATTATTTAT GCTTCAGGGG ACTACAGAAA GCCAGCTTCC TTTGATCTAT 000400 000401 GTGTAAATCA GTCCTTGGCA GAGTGCATAT AATGTCCGGA TAAATTACAC CCCTCGGTGA TAAGATTACA TACCTCCTTC 000480 000481 ATAAAAACCT GTCATCCTGT TTTGTTCTTC AGCTCCTCAT CAGGATCTTT TCAAACTGAG GCTCATTAGG GAAGGAACTA 000560 000561 GGCTGTGTTC AGACTTCTTT TGAAGAGAGA GAATTTTCAA GACTTCTTTT CACTCTTTGA TTTGGATCTG GCAAATTGGG 000640 000641 GAGGGGATGC TGGGTGGGAA ACAGTTATGA AATGCCAAGA AATTCTTTGG CTTTAGAAAT TTATCTTTCA TGTACCCATC 000720 000721 CGGGAACATA AAAGAGAGGC ATAGTGCTCA TTGCAAAAAG AGAACAGATG AAGTAGCTGT GTTATGTGCT GGTATCTTGA 000800 000801 GAGTTTTGCC AAGAAAATCT GGGCCTACAT AAAATTTGAG AATTATCTGT GTGATGAGAC CAGAAAGCAG TGGCTTAGAC 000880 000881 AAGAAAAAAT CTTTCTGTTC ACCAGTATCC TCAAATGGAG ACTTCACTTG ATCAGATGGT ATATGAAAAA TGAATCAACT 000960 000961 ATTGCTATTT CGTAAAACCT TTTTATATTT TCTAAATTTA CTTAGTGCTA AATACTGTTA CTCAGTTTTA AATGCCACGA 001040 001041 CTAGGGGAAA AAGAAACTAT TGAAGAAATA ATTGTTTAGT ATATTTGCAG TTGGGGTAGA AGAAAGAAAT CTAGTATATT 001120 001121 GATTCATATA CTAGTAAATT CATCTAGTAT AAGAACTTGT GATGTTAGAT TGAAGTTTTG TCATCTTATA AAAGACAACA 001200 001201 AACTTATTTT CTGTTTAAGT CTGAGTGTTA TGGCAATTTT TAGTTGATTA CTTATTTTTC TTAGCCAAAT TTTAATTTTC 001280 001281 TTCATATTGC ATTGCTCTTT AGTTGTCTCT GGAAATTCTA TTTACTTTAA GGACATGAGA AATTCAAATG AGAGAAGTTG 001360 001361 CTGATATTCA TCAGTGTGTT TGGACAGTTC ATAGGGTCCA CAAATCAAAT GAGGTTGTTT CCTGAAGTAG AAGAAAACAG 001440 001441 AACTTTGCAA TTGATACTGA AGTACTTTGC CATGGAGTTA GTAACTCCTG AGCAGACCAT TTTAGATGGC TCAGCATTTG 001520 001521 GCAGGAAGAC TTCTCCATTC CCTGCTTATA TCTATGGAAG GATCAGCTGT TGGATGTCTA GAACTTCTCT ATTTAAAAAA 001600 001601 AAAGAGTAGG TCTAAAATTA AATTATTATA AGCAAGCATA GACATGGGTC TTCCAGTTGA ATTGTCCATT ACCGTAAAAC 001680 001681 TTAATGGTGG ACAAGTTAGC TGTGGTTGAT TCCTGTGTGG CAGTAAATTG TCTTCTGTCT GCTTACTCCA AATAATAAAA 001760 001761 GCTGCTAGGA AGTTTAGATT TTGAAATAGG CAGTTTAATG CTTTGAGGGT TTCTAGAAAT ACAGAAAGTC ATCAAGTAAA 001840 001841 CACTGCATGT CTAATCATCT CAGAGTTGTG GCTGTTATCT CTTCAGGAAT TGGTCCACAG GGTAAATTTC AACAATTCAT 001920 001921 ACGTTTTCCA TTGTCATTTC TGAGGACCTT TGAGATGAGA GAAAGGAAAT CTAGTGGAAC AGGAAAGAGA GTTACACCTT 002000 002001 GTGGGTGTGA GTTTGGGACC TGTTGGCAGA AGGGAATGTC ACTCCCTGGA AACAGGTTCA GCATGTTTGC ACTTGTTATT 002080 002081 TTGTAGCTTT AATGATTTTT GTTTTCTAAT AGGGCAAATG TCTCTAAGCT TGGTGTTTAG AGCTGCTTCA TATTTTAAAC 002160 002161 TAGTTCCATT CCACAGTTCT AGTTCAAACC AGTTTTTACA GCCTCCTGGG TGGGTCGTCT TGACCCAAAC TCTTGTGTTG 002240 002241 TTACATTTTG AGAGGTTTTC ATACCAGAAT GTACCAAAAA GTGCACAAGG TAAAGGTAAT TTACAGCCAG AAACAAATAT 002320 002321 ACATTTGTTT CATTTCTTGA CTTTCCCTAA GCAGATAAGC AGAAACTTGT TTAACTCATT ACTTTGTTTG ATGTGTCTTA 002400 002401 CATATTTTTG ACTAAAAGTT ATAGAATGTT ATTCCTCTGG GGGAATCTTT TACAGGTGGA GGAATGGGGA TAGCAGTATT 002480 002481 GCCTCAGATT CAAACTGGCA TCACCATAAA CCCTGTAGGC CAGGGTGGAA TGAAGTCAGC TCCTTTTTAT AGTTGAAATA 002560 002561 CAATTTTTTA TTCACCATTG TCTGCACAAA TCCTTGAAAA TAAACCTTTT TTTCCCT |
Predicted Small Protein
Name | NONHSAT005011_smProtein_2117:2410 |
Length | 98 |
Molecular weight | 11212.9573 |
Aromaticity | 0.154639175258 |
Instability index | 48.8628865979 |
Isoelectric point | 9.69610595703 |
Runs | 15 |
Runs residual | 0.0231004200076 |
Runs probability | 0.0403756697875 |
Amino acid sequence | MSLSLVFRAASYFKLVPFHSSSSNQFLQPPGWVVLTQTLVLLHFERFSYQNVPKSAQGKG NLQPETNIHLFHFLTFPKQISRNLFNSLLCLMCLTYF |
Secondary structure | LLHHHHHHHHHHLLEELLLLLLLLLEELLLLEEEEEHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLEEHHHHHLLHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |