NONHSAT005025

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005025

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1046 nt

Genomic location

chr1-:109822179..109825747

Exon number

2

Exons

109822179..109822778,109825302..109825747

Genome context

Sequence
000001 GGGAGAAAGC CTGTTGCGTG GAAGATAAGG CGGCGCGGGA AGTGGACACA GGGTGGGCTG GAGGTGTGCT TCGCGTGTGA 000080
000081 TGCCAGGGGA GTGGAAAGGT GGCTTGGGGA GTGCAGAACC CTGAGGATAG TGGCGGGGAG GAAGATGGGG CGTGCAGGCC 000160
000161 GCCCCCAGTG AGGAGAGGCC AGGATGCAGG GCGGCTCCAG GGCAATCTGG GCAGTTGGGG GAGCCCTCCG TATCGTTCCC 000240
000241 GGAGGTAGCA GGAGTAGCTG TGCGGGAGGT GCCACTCCTG GGCGCTTGCT TTGCCTCCAG CATGACCCCC GACCCTGGCT 000320
000321 TGCACCCTGA ATCTAGCTGC GAGCCTTGGG CAGAATGGAT ACCTGAGGAA AGGTATGGTT TCTCTCCGGC TCAGATCTAA 000400
000401 CTGGACTCTC GCTCCTGCTG GCTGGACATG GAGGATTTgg aggaagGTAA AGAGATCAGG ACAGCAAGCA AGACTTCAGT 000480
000481 AGCAAACCAC TACAGTCAGT ACCTGGACTC GCCTCTACCC AGCAGACCCT GACTCCAGCA GATTCTGGCC CAGGGACAGG 000560
000561 AGGAAGAGAT GCCACCAGGG CTGGTCTCCC AGGAGTAGAG ACCATGGGAA ATGGGGTGGA TTAGGATTGA GCTGGAGAAG 000640
000641 ACTTAAACTC TCTGGGTTGA AAGAAGATTA GGGGAAAAGA GGTCACCTTC CAGCAGTGAA ATGAACAAAT AGAAGATGAG 000720
000721 AAGTACAGGC AAGTGGTTTG TCTTTATCCA CCCCCACTGT TGTGGTCAGC CCCAGAGAAT TTTATCTTCT TCCTTGGCAT 000800
000801 TGGTTCACTG GACATTTCCA CGTGAGCGGC CTCCGTAGCT AACCTCCCTG CCCTCTGAGG AGCCATCTTC CTGAATCGCA 000880
000881 TTCTCTACTG GACTCTGGCC TGCTTGGAGA GGTGGCAGCA GGCACCTGGT CTTCAGAAAT TGTTTCCTGT GAATTCTGTG 000960
000961 ACTCCTAATA GGCCAGTTTG TGATAAGCTT ACTCTATGAG TCTTCATTTT TCTAAAATAA AGTGAATGTA TTTTTATATT 001040
001041 CTCTGT
[back to top]

Predicted Small Protein

Name NONHSAT005025_smProtein_374:481
Length 36
Molecular weight 4237.9411
Aromaticity 0.114285714286
Instability index 65.3971428571
Isoelectric point 12.7009887695
Runs 7
Runs residual 0.0188861985472
Runs probability 0.0394049511698
Amino acid sequence MVSLRLRSNWTLAPAGWTWRIWRKVKRSGQQARLQ
Secondary structure LEEEEELLLEEELLLLLHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -