NONHSAT005114
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005114 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1461 nt |
Genomic location |
chr1+:110949631..110961082 |
Exon number |
4 |
Exons |
110949631..110950576,110954795..110954915,110958631..110958810,110960869..110961082 |
Genome context |
|
Sequence |
000001 CAACTGTTGA AAAACTCAAG TTACCTCCTG GAGGGTAAGT GGAAGCTGAG GGACATCGGT GGGAGGCAGG TGTCTCTCTG 000080
000081 TACCCTTTAC ACTTTTCCAG TTTTGAATTT TACATAGATA CTGCTTGTTC GAAAAATTTA AAGAATGATT TTTATCTACT 000160 000161 TAAGCACCAA GTAACTGATA GGTTACACAC AGGAGATACG TGTTTGTTTA CACTGCAGGG CTCGACACTG CACAACTGGC 000240 000241 ACAATCTTCC CAAAAGTCAA CCCGTTTTCT AAAACTTCCG CAGAACCACC CTGACCGTAA AGACGATTTC AACAACGAGA 000320 000321 TAGGCAGTTT TGGCCCGTGG CCTGGGCCCG GGAGACTCGC TCAAGAGGGA ATGTGCGGTG CCCGGCAGGA TTTTAATTCC 000400 000401 GGGTCACCCG CCCCGCCCTG CGGCCTTGGG TAGAGTTTAG CCCCCTCATC CCGTGTCCCG GGGGTCGCGC GACGTCCCCG 000480 000481 AGACGCCCTG GCCGGTACTC GCAGCTCGCG CCTTTCGTTC CGCTCAAGTT CCTCCGCCGC GACCTCAGGA CAGGCCGAAG 000560 000561 AGGCGCGCAC TACTCACGTG TCTTCCAAGT GCTGCTCCAA GGTCGCCTCC ATCCCACCCA CCGACCACTC CGGCTCAGAA 000640 000641 CCCAGCGGCA CGGCACGTCC TTCTCCACCA CAGGCCTCAG TCACTTGACG CGAGCGGGGC GTGGACCGTA ACGGCGCCTC 000720 000721 CAAAGGGACA AAATTGATCA CGGTGCAACG TCCGCGTTCT TTACTGGAAA ACATCACTGC GCTTCCGTCG CACAGAGCCT 000800 000801 GACGAAGGCT TGGGCTCCCC GCGCGGTGAC CGTCGAGGTG ACCTGCACCT GGCTCCATGG CGGAACCGGC CGGCACGGAT 000880 000881 TATTCCCCTC TCGGGAGAGG TCTGCAGCCG GGCCTCAGTG CTTCAGTTCG TGGCCTGGCA TTTTGTGAAG AGTGTCTTCA 000960 000961 TCTCTGCATC CCTAGTGCAA CAGAGCATGA CAAAAATTCA ACAAATATTT ATTGAAGAGT CTTGATGTCT TTTGGGAAAG 001040 001041 GAACTCTATG GTTACCTTTA CTCTAAGATT AGATGGGTGT TACTGATTCT TACCTCAGAG AAGAGAATGT CATGGAGACA 001120 001121 AAATGACCTG CTTAGAGTTC TGCACCCCCC AGCATGGAGA GCAGAGCGCA AAGATTTCTT CCGGACTCCC ACATTCCCCT 001200 001201 TGGAATCCAA GAACTGGTCT ACTGTCACAA CACTTTAGTA CCCTCTtCTC CCAAGGAGGC AGCAGAAACT GGGGTAATCA 001280 001281 CAACGGTCAA CAGCAGCAAA GGCAGCACTT TCTGATTTAC TTGACTGCTA TGGATGCCAC CTCTCTCCAC GCCTCAGTTT 001360 001361 AATATCTGTA AGTTTGGTCA GTATCTCATT CAAGAACATT GCATTTACTC TGGTACTTAA AGATGAAAAA TCAACAttta 001440 001441 caaagcagat ccattgtcaa c |
Predicted Small Protein
Name | NONHSAT005114_smProtein_1106:1237 |
Length | 44 |
Molecular weight | 5229.93 |
Aromaticity | 0.139534883721 |
Instability index | 42.9209302326 |
Isoelectric point | 10.7805786133 |
Runs | 7 |
Runs residual | 0.0054873268879 |
Runs probability | 0.0399348928761 |
Amino acid sequence | MSWRQNDLLRVLHPPAWRAERKDFFRTPTFPLESKNWSTVTTL |
Secondary structure | LLLLLLHHHHHLLLLHHHHHHHHLLLLLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |