NONHSAT005139
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005139 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1959 nt |
Genomic location |
chr1+:111059839..111061797 |
Exon number |
1 |
Exons |
111059839..111061797 |
Genome context |
|
Sequence |
000001 GAGAGACAGG ATGGACCCAA GAAGCCCTGG ACTGATCATT TCCTAGACTT CTCTGTGGAA CAGCCACCAT TGGTCTTATT 000080
000081 AAGAGAGTCT GTGCTGCCCA TTCTTGAGCC TACACTGTTG AGGATTCTTT CAATTTCTCC TGGGATGTTC TGCTTTTCTT 000160 000161 CATTCTCAGT CTCCCGGTGG TAGAAGTAAT TGAAGTTGGA GACAATGACA GGCACAGGGA GGGCAATGGT GAGGACCCCT 000240 000241 GCAATGGCAC ACAGAGTGCC CACAATCTTC CCCCCTGGGG TGGTCGGGCA CATGTCCCCA TAGCCTACAG TTGTCATGGT 000320 000321 GACCACTGCC CACCAGAAGC CATCAGGAAT GCTAGAGAAA TGGGACTCTG GCTCATCCAC CTCAGCAAAG TAGACTGCAC 000400 000401 TGGAGAAGAG GATGACTCCA ATGAAGAGAA AGAAGATGAG CAACCCCAAC TCCCGCATGG ACGCCTTCAG TGTTTGCCCG 000480 000481 AGGATCTGCA GCCCCTTGGA GTGGCGCGAG AGCTTGAAGA TGCGGAAGAC CCTCACCAGG CGGATGATCC TCAGGATGGC 000560 000561 CAGGGACATG TTCTGTTGGG CACTCGGCTC TGTCTCCTGG ACTAGCTCTG TGATGAGAGT TGCAAAGTAG GGGATAATGG 000640 000641 AGATGATGTC AATGATGTTC ATGATGTTCC TGAAGAAGTC AGTCTTGCTG GGGCAGACCA CGAACCGGAG CACCAGCTCG 000720 000721 AAGGTGAACC ACACGATGCA GGTAGACTCC ACCATGAAGA AAGGGTCGGT GAACATGGTC TGGGAGAGGA CTGTCTTGCT 000800 000801 CATGTTGAGA TTGGGGTCTC TGACCACCTT TAGCTCCCTA TCCTCCCGGA ACTCTGGCAG TGTCTCCAGG CAGAAGATGG 000880 000881 TGATGGAGAT GACCACAACC AACACCGAGA CCACGGCCAC AGCACGGGCA GCGCTGGAAC TTTCAGGGTA CTCAAAGAGG 000960 000961 AGCCAGAACT GACGGTGGAT GTCATTGGTG GGTAGCAGTG TTTCAGGGTC TTTGATGAAG CCTTCATCCT CCCGGAACTG 001040 001041 GTCCATGGCC TCACTACCCA GCTCATAGAA GGAGATTTCA TCAGCAAAGA TATCAATGGG AACATTGGCT GGGCGCCGAA 001120 001121 TTTTCCCACC AGATTGGTAA TAATATAGGA TTCCATCAAA ACTGGGCCGG TTCCGATCAA AGAAATACTC ATTTCTCATG 001200 001201 GAGTCAAAGA ACTGCATCCT TTTTTCCCGG TCTCCCAGGA GAGTCTCTGG GAACTGACTA AGGGTTCTGA GCTGGGTCTC 001280 001281 AAATCTCAGC CCAGCAATGT TGATGATCAC CCGCTGGTTT CCTTCATTTA GGACCACTGG CTCAGGCCCT GGGGGGTCAG 001360 001361 CATAGTCTCC CGGAAGCTTG GAGAAGGCCG TCTCATGGTT GGTGCTTTCG CTGATGAGGA TCTTCCCGTT GGAGAAGGAG 001440 001441 CTGCCCCCAG GCCGGCCTTT TGGGCTGGTT GAGTCGAAGT CTGTGGCATA GCCTGGCTCT TCTTGGATTT CATCTGAATT 001520 001521 ATCAAAATTG ACCAGCGCAA CCTCCATTTC TTTCCAGCCA CACACATCCA TTCTAGGGGA GCCAGGGAAG AAGCATGAAG 001600 001601 ATCCTCAGCC TTCACTGCCT GCTGTGAGCT ATGGAGAAGA AGAAGTTCAT TATACAAGAT CCAGGGCAGA ATACAACTGG 001680 001681 CCCTTGTTTA TTGAGGTAAG GTACACCAAT GGGCTAATCA ATGACTTATT TGTAGCTTGG GAAGGAACGT CATGGTTATT 001760 001761 TTGGCAGCAT GCTTCCCTTA AAATCATTTT GTACCCCTGA GTTTGCATAA ACTAATAACT AGGAGAAATT GCAAAAAAAG 001840 001841 GATCCTGGCA AAGAAGGGGA GATTCTCCCC AGCAAAGGAT GGTCTCCATA TGTGATGGCA GAGGGGCCAT ACTAAAAGAG 001920 001921 GAAGTTAACA TTCCTTAATA ATAAAAAGCA TGATCTTGT |
Predicted Small Protein
Name | NONHSAT005139_smProtein_359:604 |
Length | 82 |
Molecular weight | 9052.8206 |
Aromaticity | 0.0123456790123 |
Instability index | 66.9703703704 |
Isoelectric point | 4.16558837891 |
Runs | 11 |
Runs residual | 0.00637723816532 |
Runs probability | 0.0431019254549 |
Amino acid sequence | MGLWLIHLSKVDCTGEEDDSNEEKEDEQPQLPHGRLQCLPEDLQPLGVARELEDAEDPHQ ADDPQDGQGHVLLGTRLCLLD |
Secondary structure | LLEEEEEEEEELLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLL LLLLLLLLLEEEEELEEEEEL |
PRMN | - |
PiMo | - |