NONHSAT005146
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005146 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3053 nt |
Genomic location |
chr1+:111220024..111224633 |
Exon number |
2 |
Exons |
111220024..111220566,111222124..111224633 |
Genome context |
|
Sequence |
000001 attctagccc tgttggacag ccgaacccat cacaacaaat caatgccaaa aatggcattT CAAGAGGAAA ACATAGcatt 000080
000081 tatttagtac ccccaacaga gtagctcaaa gtgatttgaa aatgtctcat taatcctcat aacacccctg tgggataata 000160 000161 ataatattat tatAACGTTT AGGCGTAGAA CTGTGGCAAA GCCAACAGCT TCTCTGAGCA TGTGCAGGAT TTCCTCATAT 000240 000241 TTCAGTCTGC AATACTAGAG CCTGACTAAA ACCGTCAGGT TTGCAAACAG CAAGGGTAAA TAAATCTTGG TGTTTGGCCT 000320 000321 TTCTGTGTTG CTCTAGGCAT AGTTTGTGTT TCCTACTGAC CACATCAATC CCAGAAATAG TTCACCAGTT GTTTGCCAGA 000400 000401 TGGTAAGCAG CATTTAGGAT TAGCTCAGAA GTGTTTGAGA GTGGGACAAG GCAGGGCTAG AGGTCCTGAT CCACAATTAC 000480 000481 AGATAAATGA ATGGAGAAAT AGCAcctagt aacagtgtaa aagcgttcct atttctccac atcaaagtat aataataata 000560 000561 gaaaaaAgag cacctagtat gtgcacagca ttgttctaga tactgtgggg atatgaagtt taaacataga tcatgccctc 000640 000641 attgggctta catgctgttg aaaagatagg atataaatcc atgaaaattt ttacaatgct atttattaac aatacatgac 000720 000721 aagagtacta gaaatgttac tTGTGACTAT TTTGtctatt ctagccaagc tggatgcctg gctgtttctc agttatacta 000800 000801 aatgagttct gctctcaggg tcttcatact tgcccttccc tctgcctgca acactcttcc tccagttttt tttttttttt 000880 000881 tttggctctc tccatcactt taggtctcca ttaaaactgt cagcttcagg gaagttgcct tccctgacca caaccacact 000960 000961 aattcaaata gcaatccttc cccgcctccg tttggtaact ctctagtctc ttatctcctt tatttttctt catttcgttt 001040 001041 atttacttga cattatattt tatatttatt ttgttacttt cttattgtct gtcacctgca ctaaaaaata aactccttga 001120 001121 aggcagggtt tgggcttttt gacttctgta tgctccagat ctggaagagt accaggcaca tcgtagatgc ttaatGGAAG 001200 001201 AAAGAAAAGG TACAGAATGA ACATACAGAC ATGTGACAGT ACTCTCTCTC tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg 001280 001281 CCAAGTGTTT ATTTTGAAGA CGTATCTGTC TAGTTCTGGT TCATAGAACC AGTTAGGCTA TACACATATA TATACAAGGA 001360 001361 TTGTTTTTTA AGTGCCACTT CTTCCCTTTT TTTTTCACCT TCCCTTCCCA CCATCCTGAA GGGGtctgtc ctgcactcca 001440 001441 gaattatact ttaaactccc ccacttgata ttcttcctga agttccccaa acttaatatt tataacactg acctcattat 001520 001521 cttctccccc aaacttgctt ctcttcctgt tttttttttt tttttttttt tttgtgctag aatacggagt catccctgca 001600 001601 tccttcctct gctctcacat ctattcagtc actaagtgct ttccattccc cctccaagcc cttctcaatt ctgtccatac 001680 001681 ctctccattc tcactgccac tgtcccagtt caggctgcca tgacagtttc ataacaggct ccctgcttgc agtctctctt 001760 001761 ttatgtgttt tatcctccag gatatagctg agttattttt gtaaaacata ggttggatca cattgctctc cactgctGCC 001840 001841 ATGATGGCCA AACCCTGGCT CTGACCTGTC ATTCTGGCCG CATCTccaca ctacttgctg gtccttggac aggtcatcca 001920 001921 cttacacact gctgagccat tgctcatgct agctgcttat gctctagctt gctggatact cctttcacct ttttccactg 002000 002001 gtgaattcaa tcttcaagtc ccagcttagg gaccacttct tttaagagcc ccacctTCTT GTCAGTCATA ATTACCACTT 002080 002081 CAAAGAAGAT TCCATGTAAC TGATAAATGA ATTCAGTGAT ACTCTTTctc atcagagctc ttacggtatt ttgtttaaag 002160 002161 ccccattaga gggctttatt gtactatatt taggtgtgtt tgatatgatc tgtctcccta tgagaatgtg aactccATAA 002240 002241 TACtaatagc taacatattg agcagtgaat acactatgct aagtcaggca tggtgctaac cactttatat gcagtaacct 002320 002321 ccaacagccc tgtaaggcag ataatattac tactgtaata gcagtagtaa tatttcacag ataaagaaac tgaatgcagg 002400 002401 gtggtgaatt cacttgtgca aggttatata actagaaaat ggtagaacta ggattcaaac caagAAGTTC ACATCCTTAA 002480 002481 GCCCTactgt aggctacctc tgtggtgatt agaggcctta tcttattcat ctttgtattt ccagtctctg gtaTTGTGTT 002560 002561 GCTATATGAT AAATGCTTTT CATATAGTAT AACAGAAGAA AAATGATTAC GAAGCATACT AGCTATTTGC TAAAAAACTG 002640 002641 ATAGACCATG ATGAAAGAAT TAGTCGTGTT CCTCAATGCA AGGGCTATAC ATGGGCTTTC CTGAATCTGT ACCATTTTTT 002720 002721 TTAAGAAGTA AGAAAGATGC AAGGTATAAA GAGAAAGTTA TTCCAGAAGT AGATGCAGAT ATAGGTCCTG ACTGGGACTA 002800 002801 ACATGGCTCT CCAGTGTTGC CGTATCCTCA GAAAGACCCA GCAGTCTAAG TCCTTGTTCT CACATGGCAG AGTGATTTTG 002880 002881 AGAAAAACAT TTCTAAgccg agcgcattgg ctcatgcctg taatcccaga actttgggaa gccaaggcag gcagatcact 002960 002961 tgaggacagg agtttgagac cagcctggcc aacataggga agtcctgtat ccatgaaaaa tacaaaaaat tagctgggcg 003040 003041 tggtggtgcg tgc |
Predicted Small Protein
Name | NONHSAT005146_smProtein_773:913 |
Length | 47 |
Molecular weight | 5068.8878 |
Aromaticity | 0.152173913043 |
Instability index | 58.2782608696 |
Isoelectric point | 6.20233154297 |
Runs | 8 |
Runs residual | 0.0125517598344 |
Runs probability | 0.0322270800213 |
Amino acid sequence | MPGCFSVILNEFCSQGLHTCPSLCLQHSSSSFFFFFLALSITLGLH |
Secondary structure | LLLEEEEEHHHHHHLLLLLLLLLLEELLLHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTii |