NONHSAT005167
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT005167 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5300 nt |
Genomic location |
chr1+:111720836..111727722 |
Exon number |
4 |
Exons |
111720836..111724940,111725421..111725579,111726084..111726209,111726813..111727722 |
Genome context |
|
Sequence |
000001 GGAAATTGCC TTCCAAATCC TCATTAAGTT AGAAGGCTTT TACTGACATT TAGAAAGCAA GTTTATGGTC AGAACAAATA 000080
000081 AAAACAGTGC AGATGTCTTC ATAAGGCTGA TTCCAGAAGA TCAGCTGTTT TGTAAAGGTA AGTGATTTGC ATCTATTACA 000160 000161 TATGGATTAC CCATTCTTTC CCAAATTTTT TCCCCAAAGA GATGAATTTT TACCAAAGAT TATAGTTATT GTTGTTGTTG 000240 000241 TGGTTTTCCT TTTTTTTTTT TCCAAAGGAA AGCAGTTGTC TTCATGCATA AAAGTCAGTG CTTGTTTTAT ACATTGCAAG 000320 000321 AAACAAAAAG CATATTTTTT GTTTGTTGCT TCCCCAAAAG ACATTCCTTT TAGAATGCCT TGGAACTATG TTCTATCATA 000400 000401 TCACTCTTTA AAAAAAACAA AGAAGAATAT ATTCTTATTT GGAAGAGACT TAATATAATC AACTCATGGT TACTTTTACT 000480 000481 GATGCTTGAG TCTTTTAAAT GTAGTAATTG ATCAAATTGT ATTAAGCCAT AAGGGACTTT CTGGAATTCA GTTAAGGCAA 000560 000561 CTAGGTGAGT GTTACTACTG CAGGTGAGGT TTCAGGATTC ATTTGGTCAG ACTGAAGACG TTCTATGTAG TATAAATTGA 000640 000641 TTATATCTCA TTCTTGAACT ACAAGACTTT AAAATGCCTT TACACTTAAA TAATTCTGAT AGGGTGATTT TCCTTTGTAG 000720 000721 ACACTGTAAT TATGTTAACA TTTGCTGTAT TTTGGTGGAA TTCATTTACA TTAAAATGAT TTACAAACAG GCATTCCCAC 000800 000801 ATTCTTTGGA GGAAAGTGTC TAATCTCAAA ATGGTACTTT TTATTTCTGC TCTGATGTAC AAAGCCTGTA AGGACATTTT 000880 000881 ATCATGCTTA TAAGAAAACT AGTCAAAATT TACTAACTGA TATTAGTCTG CATTAATACA AACTATTGAA CCAAAAAACA 000960 000961 TGACCTTTGT AATCTGGTAA AGATACTGAT AATTTAAGAT TTTCTTTTTC TATGTCTAAC CTTTTTAAAA GTGAATTTCA 001040 001041 TTACATTGTT ATTATTTGGA TGCATACCTT CATGGTATGA GTCTGGAGAG TTTTCACCTG GCTGTAGGAC AGACACCATG 001120 001121 GTCCAAAGGA ATTCTTACTC TTCCCAACTC TTAAAGACTT GAAACTTCAA GCAGACCTGA CATAAAGATG TCTTTGGTAT 001200 001201 AGCTCTTTGG CTATTTCTAA AGAGTGGATG CACTTTGGCC ACCTTTGATA AGTTCCAAGA TGATGACAGA AAGAAAAAGA 001280 001281 TTGGGAAAGA CAGAATGTGC CTGTTCTTTT TGACTTGAGG GAGAGAGAGA ATGTGCCACC CTCCTTGATC TTAAGCGTGG 001360 001361 GGTGAGAATG GCAACACTTT GTGTTTTTTA TAAGTAGTGC CAATTTTTAA AGGATCACCT GGTGAGACTT GGGATTCCTT 001440 001441 TGACTCGAGC TTTTCCTTCA CTTTGCCTCA TATTTTCTTG GTAGCTCACT TTCTTTTTCA TTGCTAATGT GGGGGCTAGA 001520 001521 TGTTTCTTCA TACTCTCCCA AAACAGGAGT TCTACATAGA AAGGAAGAGA AAGGGAGATT TTAATCttca tttaacaaat 001600 001601 gtgtattgag ccacctacaa taaccagggc tctagagagt gtacaaaatc aattcaaaca aaatccaaca ctcaggagct 001680 001681 tatgttttgg tgTATATAGC TAACATATAT GACAAAAGTG ATGAAAACCT TAAGAATCTA TGATACTTTG CGCCTAGGTC 001760 001761 AATAGCTTGC TTCCTTACTT TGTGGTCCAA GCCATGTACT AATTTTCCTG GCTTTTCTAA TGTTTGTGTT TATTCTTCTT 001840 001841 TCAAAGGGCA ACAATTTTTA TGATCCCAAA GCAATTTCAC CAAATTTTAA ATACAGTTAT GACTCTCATT CAGTTCATTT 001920 001921 ATGACACAGA TGACTATTAT ACAGAGATGG TACTCATTTA GTACCCTGGC CCTAATACAG GGCTGTCCCT GTAATAGAAT 002000 002001 AATGCTTTGC TTCTTTTGGA ATCTGAGGGA AGTATAGTAT TTTCCCTTTT GCCAGAGAGA TCTTTTGTCT CTATGGAGTC 002080 002081 AAAAGTGGGA GGGGTGGGAA GAGAGGTTGG GAACCAGGAA ACTAGCCACA GTATTGAGTT TCAGCCAGGT GCATCAGATT 002160 002161 GAGAATGTAA TGTCCCTAGT TTATTGAACA AGAGCAGAAA AATCTCTTGG AGTTCAAAGC AACCATGGTG TTGATTTTCT 002240 002241 CCTTTCTTGA AAACAAGTTT TGAACTTAGA CTGTAGAGGT TGGAGATTTA GGGGGAGAAG ATAACCATTT AGGATAATCC 002320 002321 ATAAAGTTTA GGACTTGACT TAGTTGACCT AGTTAATTTT AGAACTAGGT TGACCTAGTT AATTTTAGAA AATTTAACAC 002400 002401 TGCTACAGTA CAATTTAAAC TTGAACATTT GATTTCAATT TTTTTTAGAG CTGCATTTTT GCAAGAGGTA ACAGAGTTAT 002480 002481 CTCAACAAAG TGAGTTCTTG AGAGTTTTGA AGAAATAAAG TATCCAACCA TTAAGATTTA TGTCTTCCAG TCTTAACTGA 002560 002561 GGTTTTCTAT ATAGTAGGAA GTGCCACATT TGCTATTTGA TTTTAAAAGT GTAGATAGAT GTTAGCCATA CAAAGTGTAA 002640 002641 ACAGCCCTAA TTAAAATGCT TTCATTGTga ccgggcatgg tggctcacac ctgtaatccc agcactttgg gaggctgagg 002720 002721 ctggcagatc acttgacgtc aagagttcga gaccagcccg gccaacatgg tgaaacccca tctctactaa aaatacaaaa 002800 002801 attagctggg cgcagtggca catgcctgta atcccagcta ctcaaaaggc tgaggcagta gaatcacttc aacccgggaa 002880 002881 gcgggggttg cagtaaacca ggatcacacc gctgtactcc agcctgggtg acagagcaag actctgtctc aattaaaaaa 002960 002961 aaaaTTTTTT TTTTCATTGT AAGAACTCAT GGCTTATTAA ACCACTGGGG GCTTTTGGAA TCTTGTTTCT ATAATCATTT 003040 003041 GTTTCTATTA CTAGACTACG TCATTTATTT TACTGTTGCT TTCTTTTCAA TCCATATTGG ACAAAATTTG AGACCAAAAT 003120 003121 TTAAAGGGAG GGGTGCGAAA AAGAAGAGAC TCTTAAATGA TTTTTAAAAT TCAGTACAAG TGTATTTCAT TTTAAATGAT 003200 003201 AGATATTGTG TTTGCAAAAA TGCATGACAT CAATCCACTC TGTCCCCCAT ACTTCAGGTA AATAAACACA TTTTCAGTAT 003280 003281 ACTTTATGAA TATATTATTC ACTTTTCTGA AAAGTACATT TAAACTTCAA AATTTTGTAT GCACAATAGT AGAATCTGTT 003360 003361 TGAATGTACT TGACCTGTTT TTTCTTCTGC ATTGTGAATG CCTTCTTAAT TGCCTTCTGC TTTTACTAGC TGCCTGTATC 003440 003441 CTAACAATTT GGAGTTGGGA ACTCTTCTGA ATAGAAATTT TATCTTCCAT TCTCTATACT CTGCAGATTT TTATATCTAG 003520 003521 TCGCAACATT TCTATTATGA TTCATACTTC CTCACAACAA TTATGAATGT TCTACAGATT TAGAGGTAGA ATTCAAAAAC 003600 003601 ATATACAAGG AAAAAGGCAG GGTGCACTCC TTTTATTAAA AGGCCAGAAC ACATCCTGGT TCACTGTTGC AAGACCACTG 003680 003681 GGATGCATTA GGTGAATCTA ACTTAGCTTG TGACACAAGT TAATAAAGTT GAATCTGGTT TTTTTGTTTT TTTTAAGGTT 003760 003761 GATGGCTGAA GTGAGATTAA TTTCTAAATA GTCTCAACTC TTGAGACTTG CTATATTGCT TATAATGAAG AGGAAAAGGA 003840 003841 CACTTTCATT ACTTTACGTA TTTATGTAAT TGGAGGGAAT GGAAAGTTTT TGGGAATATG AATCAAATAT TAGACTGTTT 003920 003921 TCTTATTTTA GTTTGTATAT GTTTTAATTG TTTTCTCTCT CTACCCATTA AAGATTCCAG TGCTGAATAT TCAAATGAAA 004000 004001 ATTTTTCCTG CACTTTGTAC TGTAGCAGGG ACCATATTTT CCTGTACAAA TTACTTCCGT GTAATCTTCA CAGGTGGTGT 004080 004081 TGGCAAAAAT GGATCAACAA TAGCAGGAAC AAGTGTCCTT TCTCCTTTTC TCCATATTGG ATCAGTGATT ACATTAGCTG 004160 004161 CAATGATCTA CAAGAAATCT GCAGTTCAGC TTTTTGAAAA GCATCCCTGT CTTTATATAC TGACATTTGG TTTTGTGTCT 004240 004241 GCTAAAATCA CTAATAAGCT TGTGGTTGCA CACATGACGA AAAGTGAAAT GCATTTGCAT GACACAGCAT TCATAGGTCC 004320 004321 GGCACTTTTG TTTCTGGACC AGTATTTTAA CAGCTTTATT GATGAATATA TTGTACTTTG GATTGCCCTG GTTTTCTCTT 004400 004401 TCTTTGATTT GATCCGCTAC TGTGTCAGTG TTTGCAATCA GATTGCGTCT CACCTGCACA TACATGTCTT CAGAATCAAG 004480 004481 GTCTCTACAG CTCATTCTAA TCATCATTAA TGATGTAATT GGTATATAGG AACATCATGT TTTCTGCAGG AAAGAAAGTA 004560 004561 ACATATTAAG GAGAATGGGG GTGGATAAGA ACAAATATAA TTTATAATAA TCAATGTTGT ATAACTTTTA TTCTTTATTA 004640 004641 TTGGTAACAC GCCCTAACTA TCCTGTGTGA GAATGGGAAT TTCAAGTCCC ATCTTGTAAA TTGTATATGT TGTCATGCAG 004720 004721 GGTTTGGGCC AAGAAAGCAT GCAGAAAAAA ATGCCATGTG ATTGTAATTA TCCTGGATTC AGAATAATAC TGTGATGGGG 004800 004801 AGCCAGATCC GCAGTGGTGG AGAGTTCTAA TGTTGACTGT TTGCAGGCCA AAAGATGATT GCTTTATAAT TTTAACAAAT 004880 004881 CATTGTCTTT TAGTAACATC CTTGTTTAGT GTCTTCTCAA GCTTTCTTTA CTGAGGAATT CAGCTTGTGA CACAGATACA 004960 004961 TCCCACTAGC TTGTGAGGTG GAACTAGTAA TAAAGACCTT GAATTTGGAT TGAAAAGTTT CCTATCTTTA CATTGTTGAG 005040 005041 GAAGTCCttt tttttttttt tttttttttA ATTGCTCAAG AAATGATTCT CTCACAGGCT TGGGAAATCC TGTTAGCATG 005120 005121 CAGAATAATG TGGTAACTTT GTCAATTTCC Cattttattt ttttaaataa atatatGATC TAAAAGCCAA CTTTTTCTCA 005200 005201 GTTTTACTCA GTGGAAAGAT AAACTAAGTT TTAATGTTAT TTTTTTAAAT TTAAGCAAAA TTTATTTCTG TTCTTTAATA 005280 005281 AATAAGAAAA TGTGGTCCAC |
Predicted Small Protein
Name | NONHSAT005167_smProtein_161:457 |
Length | 99 |
Molecular weight | 11667.966 |
Aromaticity | 0.204081632653 |
Instability index | 47.2591836735 |
Isoelectric point | 9.87957763672 |
Runs | 12 |
Runs residual | 0.0165935533092 |
Runs probability | 0.0658673379262 |
Amino acid sequence | MDYPFFPKFFPQRDEFLPKIIVIVVVVVFLFFFSKGKQLSSCIKVSACFIHCKKQKAYFL FVASPKDIPFRMPWNYVLSYHSLKKTKKNIFLFGRDLI |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEELLLLLLEEEEEEEEEEEEELLLLEEEE EEELLLLLLLLLLLLLEEEEEHHHHLLLHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |