NONHSAT005201
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005201 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2123 nt |
Genomic location |
chr1+:112282463..112290420 |
Exon number |
3 |
Exons |
112282463..112282699,112286997..112287151,112288682..112290420 |
Genome context |
|
Sequence |
000001 GAAGAGGACC CTGGGAAGGT GGCTCCCGCC TCACTCCTAG AGTGAAATCC TCGCAGCCCT GCCCTCGCGG GCGGAGCAGA 000080
000081 GACGCCGCCG CTTGGCCGGT TCACGCCTGT CACACAAAGC CGCCGAGGGT CGGCTGCGCC CCTGGCAAGG CTGTAGGGCT 000160 000161 GGGGATACTG AGTATGACAG GCGAGGTCCC TGCTCTCAAG AACTTACATG GGAGAGAAGG GGAGACAAGA TAAACAGATG 000240 000241 GAGCAACTCA ACCCAAAAAG GTTGGTCTGT ATGGTGACGG AATGTGGTCT CCCAGTTTTC AGCACAGCAC TCATTCAGCT 000320 000321 ATTCTGCTCT TCAGAAAGCA GGAGGGATGT GCCCTAAGGT GGACTATTGA AATGATGAAA GCCACTGAGG AAGAGCCAGA 000400 000401 GAATTCTCGT AGCTGTGATT AGACATCAAC CTTGGGCATG CTAAACATTT CAGCCTGGAC ACCCTGAGAA GAGCCAGTGC 000480 000481 CACTGGTGAC AGCTGCTTCT GTGCGGGCTT TTGCTTGGCC AGAGAGGCAG GACCTTCTCC CTGGCATTTT GAGGAGTGGT 000560 000561 GCCGGGTGGG CAGTGACTGC ACTAGCAACA GTCTATACCA AGAGAAGACC TCAAATTCCC AGAGAAGAAA GGCAGCGAGG 000640 000641 CCAAGAAATG CTGCCGCCGC TTAACAAGTG AAGATGCATA CTGGAGAATA GGAACTGAAC ACGCGAAGGA GTTTCGGCTT 000720 000721 TACTGCCTTC TCTCCTAGCA TTGAACAGAT CTTCTCTGCT GTTGATTATT CTCCATGAAT CATCATCCAT AGAAAGTGAC 000800 000801 TGAGGCAATA GAGAGTGAAT AATGAATCTC TCAAATAGTC TTTTGTGTTT CTGCCTGGAG GGTTTTGGAA ATAACTTGCA 000880 000881 TCTTAATCTT TCTGACTTAG AATCATAGAA TTTGGGAGCT GAAAAGGACC TTCATCAGGG CATGTGGCCT CACAGAAAGA 000960 000961 CTGGAAGAAA AGATTTGTGG GTATGAGCCT CTGGTTCATC ACTAAAAATA GGCCTAGTCT AACATATATT GGAGGCTTTC 001040 001041 CTTGTGTCAG GTACTCATTT ATTCTTCCAA AACCTTGGGA GGTAGGTGCT GCTATTCCTC CATTCTGCAG AGGAGGAAGA 001120 001121 GATGAGGAGA CAGTAGATCA CCAGAGGGCA GTGTGAGGGG TGTGCTGGAA CCATCATGTG GAACTGGCTC TGGTTCCAGA 001200 001201 ATCCACATCC TCTCGGTCAT TCCACTCCCA CATCAAGTGG CTTTGGACAA GTAATTTAAC TTCTTTGGAT CTCAGTTTTC 001280 001281 TCCTCCGTGA TCTCTAAAGT TTAAAAATTA CTAACAGTCT GCATCTGCCA CCCAAGCATG TGATTTTACA AGTCAGAAAA 001360 001361 GTGTAGCGCA GAAATGTTAA GTGACCTGCC CTAGGTCACC CAGGTTGCTA AGGGCAGAAT CAGCACAGAA ACCCAGGCCC 001440 001441 AGTGACCACT GCCCCCAGGC AAGACCTCCT TCCCTTCCAC TGCACTTTGG CAGGTGTTCT AGGGGAATCC AACTCCTTGC 001520 001521 CTTAGAGGAG ACCTGTTCAA TGATATCAGA TAGACTGGAG ATGTTACGTT TTGGTGTGGC CAATCACAAC ACCAGGATGA 001600 001601 GCTTAGGAGG CTGGTGATAT TTGTCTATCT AAGCACCCCC AACCTATCTA TCTGTCTGCT GTTTGTCTAT CTTTCTCAGG 001680 001681 TTATGCATAG TGACCAAACC CCGCCTGGTA ACTGTAGGGA AAGAGCATGA CTGGTGTGTT ACAGCTACAC ACGCCCCCTG 001760 001761 GTGGTATTTC CAGTTGTTTG TCCTCTTCAT GCAAATGTTG CCACCTTGTG CCAGCTCTCT CACCTAGCTT CCTTCATGAC 001840 001841 GACAGTGGTT GCAATTCTGC TCCTCTCTCT GCCTTCCCCT GTCCTTGGCT CCCCATGTCC AGAATCTGAT CATTTACTGG 001920 001921 TGTGCACCCT GGGATGTGAT GTGTGCTTTG GGAGGAGACA GGACCCAACA GTATCTCAGC TGTGCTCTGG TAATCAGTGT 002000 002001 GCACCACATT ACAAGCATCC TCATCCCAGT ATCCTCCCTA TTGAAAAAGA AATGGGAAAG GGGTGGATGT GTCAATAAAC 002080 002081 ACAACATTGA AGGCATCTGA AATAGAACAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT005201_smProtein_1835:2077 |
Length | 81 |
Molecular weight | 8673.1215 |
Aromaticity | 0.0375 |
Instability index | 75.42625 |
Isoelectric point | 6.37091064453 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0339502398326 |
Amino acid sequence | MTTVVAILLLSLPSPVLGSPCPESDHLLVCTLGCDVCFGRRQDPTVSQLCSGNQCAPHYK HPHPSILPIEKEMGKGWMCQ |
Secondary structure | LEEEELLHHHLLLLLLLLLLLLLLLLEEEEELLLLEEELLLLLLLEEEELLLLLLLLLLL LLLLLLLLHHHHLLLLLLLL |
PRMN | - |
PiMo | - |