NONHSAT005321
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT005321 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2071 nt |
Genomic location |
chr1-:113739404..113748875 |
Exon number |
3 |
Exons |
113739404..113741312,113744395..113744464,113748684..113748875 |
Genome context |
|
Sequence |
000001 ATGGCTCATT TATTTGCTGA GTGGGACTGG AGGCCCATAG CCGCAGAAGA TCCTGGCCCC ACAGCAGCAG AGAGCAAGCT 000080
000081 CAGAGTGCTG TCAGGTCTCT CCTGCTGCCT CTCGCCATGA TGATGTAGTG GAAAAATGGT CAACAAAGCT ATTTCCTACT 000160 000161 GTGTGCTAAA TGCCCATCAT GGGAAGTCCC AGGAACAAGA AGATCATGGG TGAGGCAGCT GCTCAGAAAC AAATGTCTTT 000240 000241 CAACAATTAC CCCCAGGCAT GGGTGATACA TCCTCTTCGC AGACAGCAGA AAAACATCAG ATTTGTGATT TAATTGGGAG 000320 000321 TTTTCTGGGA TCGAACAGTG GCTTCGTTTA CAGGTGGGTT GCCGAGCGGC CATGGTAACT GATGGAGCAG TCACTATGGC 000400 000401 AGTCAGTAGG GCTGAGTGGG AAGGGTGCCC TGGGAGCCTG GAAGCGTGGG AACCAGCAGG GCCGCAGTCG TCCATTTCCC 000480 000481 ACCCAGTCTT TCCTGTCTCT CGGGGATCCC TGGCAGTTGC TCAGCTGATG CTGAATTGAG AAGCAGCCTG TGAACATGAA 000560 000561 GGGTATATGG CAGAGGATCC CAATTTGGCT TCTGCAAGAA GTAGAACCAA CAATGAGCTA CCTGGGGAGG CCCTGTGCCT 000640 000641 CCGACTCTTG CTACTCCTTG GAGCCTCGGG TCTCCGAGAA TAAACACCCA GTATACTCTA GGGACCTAAC CGCTAATCCC 000720 000721 AGGAGCCCGA GCTAAAGAGA AATAGTGTGT TTTGCTTGTT TCATCAAGCT GAAGTCTGGC TCACCTGATC CTGGCTTATT 000800 000801 TTTTGCTTCT CTGCAACTTC TGCCTGAGGG GACAGGCAGT CCCAGCGTAT ACACAGCCTG GGCACAGCCC TCCAGGTCCT 000880 000881 GCTGGGGCCA GAAATTCCTT CTGGCTTTAC CACTTCTCAT CCTGGTGCTT ATTGCCTGAG CCCTTTGGGA AAGGCACCCT 000960 000961 GTAGATGAGA ATTGCTGACA GTTTGGGGGA GTGAAAACGT GCAGGAAGGC AGAGGATGTT CCCGTTGCGT TTAAGATCAG 001040 001041 CTGTATTTGG AGAGAATTCA AAATGCAAGC GTACTTATAC AGTCATTGGA GGTCAAGTTA ATTTATTGCC TCCTGGTTAC 001120 001121 AGCATCAGTC CCGCCCCTTA GAACGAGCTG AATTTTGGAG TCTGGTGGCC AGGCAGAATC CTATGGAACC TTCTCCAGCA 001200 001201 TCTTCTTCAT GGTCGATCTC AAGGTCACTC AGGGCTTGTC TTGACTAGTA ATAATAGAAG AAGCCAGCAC TTTTAGAGTC 001280 001281 TCTCTTGCTT AGTACCCTAT GAAATGCTTT ACATACAATA TCTCAATCCT CACAAGAACC CTATAAAGAA AGGATTATTG 001360 001361 CTGCCTCCAT TCTATAAATG AAAAAACTAA GATTCAGAAA GGTCAAGTAA CAAACCCCAA GTCACAGAGC TGGTAAGTGG 001440 001441 CACGAAAAAA AACTCAGATT CGGGCAGGCT TGCATGTACA CTCTCCCTGT GAGGGATACT GCCTCCTGCT AGCCTAGCCA 001520 001521 CAACCAAAGG AAAGTAATAA TAGCTCAACC CTTCATCAGT GCCAGGCACT TTGCTAAGGC GTTTGCTTGC GTTCTTCTAA 001600 001601 CTCTTGAATG AGGAAACTGA GAATCAGAGA GATTAATTCC TTTCCCCAAA GTCACACAGC TAGTATGACA GAAACTATTT 001680 001681 TCCTCTAAAA TCTAATTTCT CCTTATTGTA CAGTAGTAGA CCCTCATTTT TAGCTGAGCA TGTGGCCTTC TAGAGTTATG 001760 001761 ACTACATTCT CCAGACTCTG TTGAAGCTAG GTGTCCATGT GACTAAATTG TGGGCAATAG GATATAAGCA AAAGCGGTAT 001840 001841 GTGCAACTTC CTGGAACTCT CAGCCTTCTC TCCGCTGCTG AAATGCAGTC GTGACAGCTT GAGCCAGAGG GTGCCAGCCA 001920 001921 GTGCCATGAT GTGACCAAGG CCATCAACAG CAGAGCCGCA AGGGAGCAGG AGCCTTGGTC CCTGAGGACA TGCTGGAGCT 002000 002001 AACTTGGGAA TCCTGAGGTG GCCACCTCCA AAATGTTACA TGAAAGAGAA AAGTAAACAT CTAACTTGCT T |
Predicted Small Protein
Name | NONHSAT005321_smProtein_371:538 |
Length | 56 |
Molecular weight | 5726.4556 |
Aromaticity | 0.0545454545455 |
Instability index | 45.6381818182 |
Isoelectric point | 4.57110595703 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0308249425896 |
Amino acid sequence | MVTDGAVTMAVSRAEWEGCPGSLEAWEPAGPQSSISHPVFPVSRGSLAVAQLMLN |
Secondary structure | LLLLLLEEEEEEHHHHLLLLLLEEELLLLLLLLLLLLLLLLLLLHHHHHHHHHHL |
PRMN | - |
PiMo | - |