NONHSAT005387
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005387 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(AS) |
Length |
2803 nt |
Genomic location |
chr1+:115825655..115910884 |
Exon number |
2 |
Exons |
115825655..115825861,115908291..115910884 |
Genome context |
|
Sequence |
000001 GTTCCGTTCA GGCCTGTGCG AGAAAGACTC CCAGGCCCCT GGGTTCTCCA TAGCCCACAC TTCCACTCGG CTCCGCTTCT 000080
000081 CTTGCCCAGC TGTCTCTCCT CCAAGGAGCG GACAGGGCGG ACACGAGACC CGGGTGCCCT TTTGTCCTCT ATTCCAGCTC 000160 000161 TGGGCGGATC CTCCTCCCAT GATGTGGATG ATGCTGAGGA GAAAGTGGAA GACGGGTCTG AAGAAGCAAG GACTGGCAAG 000240 000241 TCTGATCCCC CACTCTGATT CTCATTGCTG AATGTCTGGG TCTTCCTTGT GTACCTGCTG GGGTGGGAGA CTGCTCGCAG 000320 000321 CATACCTGGC CTATGACATG CCTAGCTCTC TGGGGTGGAT CTTGGACAGG AAGACTGCTT CTGCCAGAGT AAAGAATATG 000400 000401 ACGGAGCTCC TCATCCGATG GAGCCTCTGG GAAGAGGCGA AGAGCCAGCT GGAAGCCTGG TGGGCCTCCG CTGCCAGCAG 000480 000481 GACAGATGCA TCAAGTCAGG TTTATGGGAG AAGTCTTCCC AGACCACTAT GTCCAAACTT CTGTCCATCC TGCTATAACC 000560 000561 TCTCCAGTTA GATGGATGAA AACCAGACCA GTCAGCCATG GACCAGAGCT GCAAAGATAA GAACCCAAAG AAGAAACAAA 000640 000641 TGGTGTAGCA TTAAGTATTT CTTTCCACTT GAGCAGAAAA ATCGGAGACT AAGGGAACTG GAGGAGTGTG GCCTTTGAAT 000720 000721 GAGACTTGAG GTGGTGAGAC AGCAAGTGAA CGTGGGGATA CTTGCTCAGA GCTTTGCTAG AATACCTCAT GGTTTACTGG 000800 000801 ACCTAGGACC TTCTTGATAT AGAAATGACC ATAAAAAGAA AGCAGACAGA TTCCCATGAA GAAAAAGTGA CCTCTCCTCT 000880 000881 GAATTCCATG CTTGGAAAAG TACTTATTTA AAGGAAGGAA AAAAGTCTCC AAAGCAAAAC CTGGCTTGTT TAGATAACTT 000960 000961 GGTCTAGGAA CATGGCGGAA GCTGAACCCA AGAACATGCC TGCACAGTGC AACTTCTGGG TGGGAGTCAG TTGTCTTTTC 001040 001041 TGAGTTCCCT GGACCTGAGA GTGTGACACT GAGACCAGGG GTGTGGAGAA ATCTATCTCA TATTTATGAC ATGTGGTGGG 001120 001121 ATCTTTACTG AGCATTTCAA CCCATCCTGT AGTAAAGAGT GCTGAATCAT GGTGGGTCAC CCTTCTAGAC TAGAGACAGC 001200 001201 CTGGGTGGGT TCACTGGAAC CAGCCAAAAT GGCCACAGGA CCAGCTTGAG TCTCCACTAC AAAGGGCAGG TGAGGGGAGC 001280 001281 AGGAGGTAGA ACGTTCACAG GACAGGACGA TCAGGAGCAG AGAGTTGCTC TAAGATATGA GCACCAGATG GGGAAATTTA 001360 001361 ACAGAGTGGA CTGTAGAGTC ACTTGGAAGG AAAAATGGAA GAGGATTTTA TATTACAGCT GCTGTCAATG GTTCTAACCT 001440 001441 TGTAGAAATC TATAGGTAAA AATATTGTGA AATTACATAT GCCCTTTGTT TTCACTTAGT TTTTAATTTC GCTTACTCTA 001520 001521 ATTACTAGCT TTTCAATATA GGTTTAAAAA GCAGTTATCA GATTTTTATT AATTAAGATA GAAGAAATCT TTTCTCATAG 001600 001601 ACTATTTAGT TTTTTATTTT GAAATTATGT TAAACTTATA GAAAAATTTA CAAAAATAGT ACAGAGAGTT CCTGTATATC 001680 001681 CTTCAACTAG CTTTCCCTAG TGTTACTGTC ATACTTAACA ATAATACATT GATCATAAAT AAGAAATGAA CATTGGTACG 001760 001761 ACACTATGGG CCTAACTACA GACGTTATTC CACTAGTATC CTTTTTCTGG CTCAGGATCC AATTCAGGAT CTCAAATTGC 001840 001841 CTTTAGTTAT CACGACTCCC TAGTCTCTTC CAATCTGTAA TTGTCCCAAA TTTTTCTTGA CAACTTCAAC ATATGTTTTT 001920 001921 AAAACTTTTT ATTTTGAGAT AACTTTAAAT TCACATGCAG TTGCAGGAAA TAATACAGAG AGATCCCTAT ATTCCTCACC 002000 002001 TAGTTTCCCC CATTGGTAAC ATCTCAATAA CTATGGCATA ATATCACAAC TTGGAAATTC ACATTGATGA GGTACATGGA 002080 002081 TCTTCTTCAG ATTTCACCAG TTTCACATGG ACCTGTGTGT ATCAGTGTGT GTGTGTGTGT GTGTGTGTGT GTCTGTTTGT 002160 002161 ATCAGTTCTG TGCAGTTTTA TCACATGTGT AGATTCATAT GGCCACTACC AGAGAACAGT TCTATCACAA GGACCCCCAG 002240 002241 TGCTACCCTT CTATAGCTAT TTCCGTTTAT CCCCAGCTCC CAATCCCTGG CAGCCATTAA TTTGTTCTCT ATCTCTATAG 002320 002321 TTTTGTCATT TCAAGAATAT CACATAAATA GAGTTATACA GTATGTAATC TCTTGAGATT GGCTTTTTTT CACTCAGCCT 002400 002401 AATTTTCTTG AGATCCATCC ATGTTGTTGC ATTGGTCAAT AATTCATTCA TGTTTCTTGC TAAGTCGTAC TCCATGGTTT 002480 002481 GATGGACCAG TTTGTTTAGG CATTCAATTG TCGAAGGACA TTTGCACAAC CTCAGTTCTT TTGAAGTCAG TTTTTGTAGA 002560 002561 ATGTCTTTTG ATTTGAGTTG GTCTGATGTT TTCACATATT TAGATCATGG CAATGCATTA TCATCATGAA TACCACAAAA 002640 002641 GGGCTGTGCC CTTCTGAGTT CATCCTATCA AGGAGTACAT GAAGTCAATA TGTCTCATTA CTGGTGATAT TAACTTTAAT 002720 002721 AGATTGGTTA ATTGGTGTCT GCCAGGTTTT TTTCTGCTGT GAAATTACTG TTTTTCCTTA GTAAATAATA AATATTTTGG 002800 002801 AGG |
Predicted Small Protein
Name | NONHSAT005387_smProtein_2420:2575 |
Length | 52 |
Molecular weight | 5777.9475 |
Aromaticity | 0.0980392156863 |
Instability index | 46.6901960784 |
Isoelectric point | 6.68023681641 |
Runs | 12 |
Runs residual | 0.0810522228693 |
Runs probability | 0.0291173526467 |
Amino acid sequence | MLLHWSIIHSCFLLSRTPWFDGPVCLGIQLSKDICTTSVLLKSVFVECLLI |
Secondary structure | LLLHHHHHHHHHHLLLLLLLLLLEEELEEELLLEEEEEEHHHLEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToo |