NONHSAT005463
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005463 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1813 nt |
Genomic location |
chr1-:117568104..117602112 |
Exon number |
5 |
Exons |
117568104..117569408,117574736..117574868,117574874..117574958,117592789..117592956,117601995..117602112 |
Genome context |
|
Sequence |
000001 TTGGCCCGCG CTGCTGCTTC CTGTGTGTAC TGGATATTCT CTAGGCTCGC CCAGCGTGGA AGCCCCGAGT TACCAGCCGC 000080
000081 AACGTGGAAA CCACAGAAGG GGAAATAGAT GACTTTTGGT TATCCAGATC TCTTTGAATC TTGTTCCTGT CAACTGACTT 000160 000161 ATTAGTGCCA TCTCCTAATT CTGTGTCAAC TTGACAAGCC TGCTGTCTTT CCCTTCATCC AAGTTGCCAA TAAAAATGCT 000240 000241 CAACAAGGCA GAGTGCTTTA GCAAGACCTG GAGAGATCTC CTACAGGGTC TCAATGGAGC CTGATGAATG AATCAATTGC 000320 000321 ATGAGTACAT TCCACACATG GGAACCCAGG GATGGCTGCC ATCATGCTAT AACAATACAG ATCATCACTG AACATTAGGC 000400 000401 TGGCAGCTCT GAATGGGGCT GGCAAAGAGC AGCAGAGGTT CATGGCCTGG ATTTTCTCTG ATCTCATTTG TATCCTTCAT 000480 000481 CCTAAATTTA GTTTTGTTTT TTGAAATGGT TTATCTTTTA AAAACCGTAT ACCTGTTTTA CAAGGATCTC ACAAAGATTA 000560 000561 ACAATATGTA TGCTATGAAG GATCCCATCT GCCTCAGAGA AGATACGCTT TTCATCACAG ACTGTATACT TTTTACAGTT 000640 000641 CTTATCTATT TATTCTACTG CAAAAACTGC CGATTCTACA GAGCCTATTA ATTCCACTGG GAAAACATGT ACGGAATGTG 000720 000721 CTCATGAGTA TGGGACTTCC TGTAATTGTT GGAAAGAAGA AAAAGGCTGA TAGAAAAAAC ATTTTGGCCT GGCACTCAGG 000800 000801 AGAAAACTTC TGCTGAGGAA TGAACAGGGA AAAACAATGA TGGACCACCT CAAGGAACAA ATCGGATAGC TTCGACTTCC 000880 000881 CCTCTGGAAG CCCTGCTGCG CTGGGATGCA CCTATCCCTA CTTCTTAGAT GTTCCCATAT GTTCTCAACA GCATTCTGTC 000960 000961 CCTCCTAAGC AGTGTCACTA AAGCTAGCTG GTCTCTTAGG ATTGTTACCT TTATTGATGA TTTTCCCTTT GTGCTTCCTG 001040 001041 GTGTCTGGCA CCAAGACCAC ACCCCTACTT CTCCAATGGC CCTTTCCCTC AGTAAGCTTA GCTTATTGCT CACCTCCCAC 001120 001121 CTTCTCCCTG AACCCCAGCA GAAAGACATG GACCTGTCAG ATGCTCCCGA TATTTAAGTG TCTATGCCAA AATCTCATGT 001200 001201 GGACCTTGTT TGTTCAAATG AGTTACTATT GAGAGAGACA GCAAAGTCAT CTTCTTTAGG GAACCTGAAA ATTGTCTTCA 001280 001281 GTCTGAAAAT TGTCTTCAGA AGGAGCAAAA GATAGGTGAG AGGGAGAGGA TAAGAGGAGA GCCATGTATT CTCCTGACCA 001360 001361 TGAGCTCGCG GTAGATAAAC CCCTGGTTAC CTGAAGGCAG CACCGTGAGC ACCATCCGCT GTGACTCATC GGATGCTTGA 001440 001441 TTAATCCACT TGCTTGGGTG TCCATGGAGC TGCCACTCTG CCACCCTACA CCAGTACATT CCTGCATCCT CCATCTCCAC 001520 001521 CTGATGAAGC TTCAGGACAA AGTCTGTAGA GGATGAACGG TAACAGTGCA GGTGCCTCCT GAGCCCCTCT TCCCCATACT 001600 001601 CCAGCAAGCC ATCATGTTGC AAGTGCACCA GCAATTTACT TCCAGAGTTT TCTCTGTTCC AGTACCACAT CACAGAGTAC 001680 001681 AGAGTGGCTG AGCTGCCTAC ACTCTCCAGG CTGCAGCGGA TGGCCACTTC TCTGTGCTCA GTCACATTTT CGGTCCAGTA 001760 001761 CACTTTGGAG ACACGTACCT TACTTCCTAG AAAATAAAAT GGCAGTAAAT TAG |
Predicted Small Protein
Name | NONHSAT005463_smProtein_1016:1231 |
Length | 72 |
Molecular weight | 8261.8915 |
Aromaticity | 0.169014084507 |
Instability index | 42.5253521127 |
Isoelectric point | 8.99090576172 |
Runs | 14 |
Runs residual | 0.048628613788 |
Runs probability | 0.0354051530522 |
Amino acid sequence | MIFPLCFLVSGTKTTPLLLQWPFPSVSLAYCSPPTFSLNPSRKTWTCQMLPIFKCLCQNL MWTLFVQMSYY |
Secondary structure | LEEEEEEEELLLLLLLLEEELLLLLEEEEEELLLLEELLLLLLLEEELLHHHHHHHHHHH HHHHHHHHEEL |
PRMN | - |
PiMo | - |