NONHSAT005499

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005499

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4965 nt

Genomic location

chr1-:118379076..118400566

Exon number

9

Exons

118379076..118379412,118379519..118379599,118379628..118380383,118381198..118381221,118381315..118381982,118382950..118383734,118383875..118384552,118388861..118389491,118399551..118400566

Genome context

Sequence
000001 AAAGCACAAT AAGATTATGT ATGCCAATAT TCTAAAACAA ACAGGATGGA GGAGCATCTA GACATTCTTT ACTGAATCTT 000080
000081 GTAATAATCT TACTACTCAA AGGAAGGTCT GTGGATCAGG AACATTGACA TGTTAGGAAT ATAGACTCTC AGCCCCCACC 000160
000161 CCAGCACTAC AGAATCCGAT TTCATTTTAT CAAGATGCCC CAGGCAATTT ACATCTACAT CAAGGTTTAA GAGTCCTTGT 000240
000241 AATCCTGGCT CTGGCATTTA CTAGCAGTGT GATGTTAGAT TGCATAATCT CTGTGTCCAC TTTGTCAACT GTAAAATAGA 000320
000321 GGGTGGAGTA CAGGAAGACA GGGTGCATGT AATTGGATAT TGGGATATCT CTAGAGATAA GGTACACAAA TGTTAAATAA 000400
000401 CACCTCTTGC TTAGTAAGCA TTGGTTATTT TCACGTGCTA AGTACTTTCA AAAACAACTG TAAGGGGATA CAGCTTTCAA 000480
000481 ATTCTCTTAA GTATTTGAAC TCATCGTCTT TAAACCCTTA CCCTTATTTA TGTCATATTA AGGGTTTTTA GCCTATTGAA 000560
000561 ATGTTGGGGA GGGTTTTTAT TCATCTGGTT TAGTCTTTCT TCCTTAGAGA TGAGTAAGCA CAGGAAAAAT AAGCATTTCC 000640
000641 AAAGTCAGCA AATAGTGTTT GTCCTAATAA GCCCTAATAT AGACAAATGG CCATAACTTC AATCAATGAA TTATCAAGTT 000720
000721 ATAAACTTAA AAATATACAC AGAAACAATC TAGTAATTTG TCGAACCTTG AAGGACACTG ACTGCTTAAT GGACTTTAGT 000800
000801 CATAATATGT TGTAACCCTA GATTAACTGA AATGGGTGAA ATGGATATGT ATATATAGAA TAAGTTTGTG CAAAGAGAAG 000880
000881 ATAACCTGGT TTTCAACTTC TTTGAAAACA TGTTTTAGTA TAATCTTTGT GCATCGTTTA GTAAGTATAA TATATTCTAT 000960
000961 TAAGTTTCAT GTTTGTCTTA TGTAATGATT TGGAAAGCAC ATCCAGGTCT TTCAGTAAAA TTCTAGTGAG GTGTGACCTT 001040
001041 GCAAAGATTT TTCCAGAGTA TTTCTGGAGG ATGCCGAACT TGAGTGAATT GTTAACATGT CTAACAGTAT TCCTGTGGTC 001120
001121 ACTCCTGAAT TGGATTTTTA ACTATGTTAG CTCCAGATGC GAAGAAAGTA TATAATAATA GAAAATGACT GTTCTCCATC 001200
001201 TTTTAAACAG AAAATTTTGT TAATAAAAAT TTCTTCAGGC CATCTCACTA CATGGTCCCC GAAGCACTTT CTCCTGAGTA 001280
001281 AACCAATAGG CTCTGACTCT TTCTCAACCT CTTATGATAA AAACTGTTTT GATGTACTGT TGGATTCAGT TTGCCAGTAT 001360
001361 TTTGTTGAGG ATTTTGTATC GATGTTCATA AAGGATATTG GCCTGAAGTT TTCTTCTTTT ATGTGTCTCT GCCAGGTTTT 001440
001441 AATATCAGGA TGATGCTGGC CTCATAGAAT GAGTTAGGGA GGAGTCCCTC TTCCTCAATT TTTTGGAATA GTTTCAGCAG 001520
001521 GAATGGTACC AGCTCTTCTT TGTACATCTG GTAGAATTCA GCTGTGTATC TATCTGGTTC TGGGTTTTAT GTTTAGTAAG 001600
001601 CTATTTATTA CTGACTCAGT TTCAGAGCTC ATTATTGGTC TGTGAAAACT GAATTTAACC CAAAGCTGCT TCATCTCTTT 001680
001681 GAATTTATAC TGTTCCTTTG AGTATCCTTA AAGTCCCATT ATAAGCACTA CCTTCCATAA AGCTTTGCCC AGTTCTTCTA 001760
001761 ACCTCATTGA TCTGCCTCTG CTGCTCTGCT CTGAACTTAA TCCCTATTTT TAGGCCCTTA TCCTTAACCT TGCAGAAGAG 001840
001841 TCGCTTGTGT TCCTGTCTTG GGTCCCCCTA TGTTTCCACA GGCAGAAAAC TGCATGCCTT ATCCATTCCT CCACTCCCTA 001920
001921 TGGTGCTTAG CTTGGCATCT TCCTAACACA GGCTAGATGG GCTGTGTCTG TTGCCGCATA TGCACATTGT GAAGCAATAT 002000
002001 GTCATAGACC TCCAAGATAA CTAGTATCAT CTCTTCATTT TAACATGAGA AAACTGAGAT GTACAAAGGC ACTCAAAGGT 002080
002081 GCAAACTCAA GGTCATTGGT GAGATGGTGG CAGAGCTAGG TCACGTGACT CCCTGTAAAT TACCACCTTC TAAAATGTAG 002160
002161 AGGGAAATAT GATGTCATGG GAGAGTATTT TGTGGTCATG AAATAGTATG GATTGCCTAT ATCCTGATGG AAATAATACA 002240
002241 GCAGAGGGGA AAATCGATGA TGCAATGATT GTAAGAGGGA AGTTATCAAG TAGGTAAAAG GGGGAAAAAT CCAGTACACA 002320
002321 ATGAATAAGA AGTATGGTTT ACAGATAAAA ATGGTTTATG GGTAAAAATG AGGAGGAGGC AGAAGACATT GTAGGTTTGA 002400
002401 AGAGAGAAGA GATAAAAGTT TTTCTAGGAG AGTGGGAAAG GGAATTGATG AGGGAATCAT AGTATGATTT CAGGCAGCTG 002480
002481 TGACCATTAA GGTTTGTGGT CAAACAATGT TTTTCAGTGG AGATGCTGTC AGTGTTTCAG GCAGGCATCT TCCTTGGCAT 002560
002561 TTAGCATCCC TGGCCCTTGG TAGTACCCCT CAATCATTGT GCTGATCAAA ATGTTCTCTG CCCCACTTCC AAACACTGCC 002640
002641 CAGGGAACTG AACCTTTCCT GGTTGAGGAC CACAGAGAGA CCAATCACAA AGTTGCATAG TTTTCTTCAG TCACATTCAG 002720
002721 ATGTTGGCAG GGACTATGCA AAATCTGGGT TTATGAGTGT TAGGGTTAGA CAGAAAAGGA CAGTGAAAAT AGACAGAGTC 002800
002801 AAAGGAATTG AAAGTGTATG TAATGCAGTA ATTATAACAG ATTTTATGAA CAACAAAATA CCTCTGCTGG CCTGAGGCAA 002880
002881 TCAGGACACC ACAGTGGGAA GGGAATTCCT GGCTACCATT GATGAACATT TGGACATGTG TCCAATTTGG CTATTATTAA 002960
002961 TAAAGCTTAT ATGAATATTT TACACATATC TTTGGGTCGA CATATGCATT TATTTCTGTT AGTAATATAC ACAGAGAAAT 003040
003041 AGAGTTCTCT TGGGACTTGC TTGATCAAAG GGAATACGTA TCTTTAGCTT TATTTAAAAT TGCGAACTAT TTTAAATTCC 003120
003121 TGTCAGCAAT GTGTGAGAAT TCTAGTTGTC TACCACATCT TTACCAAAAA TTGATCTTAA TTAGTGCCTT TAATTTAACC 003200
003201 ATTTGGTTGT AGTGTAGTGG TGTCGCATTG TGGTTTTCAT TTGTATTTTT CTGATGTCTA ATGATATAAA CTTCCTTTTT 003280
003281 CATATGCTTA TGAGTCATTT GAAAACACTC TTTTGTTGTG TGTCTATTTC CAGTATTTCT CCCTTTTTAT TGAATTCCTT 003360
003361 AAATTTGTAG TTCTGACTAA GTCCCTTGTC ATATGTATTA CCTATCTTCC AAAAATCTTC TCACAGTCTG TGGCTTGCCG 003440
003441 TTTCACTCTA TTGTCTTTGT TGAATAGTTC TTAATGAAAT CCAATTTATT ACGCTTTTCT CTTTAGCACT TTATATATCT 003520
003521 TGTTTAAAAT GTTTTAACCT ATCTAAAATA ATGAAGATTT TTTTTTTCTA GAAGTTTCAT TGTTTTAGTT TTCATATGTA 003600
003601 AGCTATCACA ATTTTTATTT TGGTGTGATG TGAAGTAGAG GATTAATGCT TCTTTTTATT TTAATGGATT CCAATTGACA 003680
003681 CAATACTGTT CAATGAGAAG ACTGGTCCTC TTGCACTCAA TTGCAATGGC ACCCTTGTCA CAAATCAAGT GACCAAATGA 003760
003761 AAACCATTTC CCTTTATATG CTCTGAAACA TCTGCAAAAA CTTAAAAACC TGGCTTATCC CCTCCCCTAG TCTCCAGCCT 003840
003841 CTTGCTGTTA CCTCCCGATT CCTGAATCTA CCAGAAGCCA GCTGACATTG GAGCCTCGGA AGCATGCCCT GCAAGGGCCA 003920
003921 GCCTCAGGAG GATAATGCCT AGAAGGGGAA GGTTACAGAG TGATCTAGGG GCAGAAGGCC CAGGACTAGT ACCCTATCTG 004000
004001 ACCCAGACCC TTTCTCTGGA GTTAGTAATT GGTTTTTCTT CTAATTCTTG AGTCAGTTTT GGTTATCTCT ATTTTCCAAG 004080
004081 AAAATCATCT ATTTTACTGA GGTTTTTAAA TTAGTGTAAA ATTATATTTT ATCATGTAAA ATCTCCGTGT TTATAGTTAA 004160
004161 TTTCTTCTTC TTATTCTAAT TTTGTGTATG CATAAGCTTA AATATTTTTC TGCATTTGTG ACAATTGCCT AGGGACAGGC 004240
004241 AATTTTATTT AACATGTTCC TCTGACCCTT GTCCATTCTT TGATTAATAA ATAGGTCTAG AAGCTGATCC AATTCAGGAT 004320
004321 CAGTTATTTT GGCATAAGTC CTTCACAGGC AGTATGTACT TCCATCAGGG GCCATGTAAA CATAAATGTC CTTTTTGATG 004400
004401 TTAATAGCTA TTGTTGACTA TTGCCTAGAT ACATTAGGAG TTGCAAATGC TGAAAAACTA ATTTTATCAT TCTTTATTTG 004480
004481 TTTATCAACT GGAACAATTC TTTAAAGAGA AGCTATCCCT CATCACTATT TGATCACTCT TAACTGTCTG TACTTTTCCT 004560
004561 TTATACCTGA CTTCCTTTAC CAAAATAATA ATCTTTTCTC TAATACAGAC CCCAGAATTT TTGCAGAGAC TCAGTTCTCT 004640
004641 CTTTGGAGGC AACCACTGTT ACAAATTTCT TATGGTAGTT TCCAGAGATA TCAAAACTAT ATATTCAAAT GATAAAGCAA 004720
004721 ATGGGTTAAA ATGACAATAA TGAGTGAATC TGGGTAACAG GTGTATAAGT GTTCTTTATA TTGTTTTATT TGTACAACTT 004800
004801 TTGTAAGTTT TAAAGTATTT CTAAGTAAAC AGTAATATGC ACATTAAATA ATATATATTA TATATATACT TTTTGTTTAG 004880
004881 TAACTCAAAT GATACTAACT GTACACGCCG TCCTGCCCCT TGCTTTTCTC ATTAAACCAT ATTATCTTGA AGATCTGTCC 004960
004961 ATTAG
[back to top]

Predicted Small Protein

Name NONHSAT005499_smProtein_968:1174
Length 69
Molecular weight 8120.4441
Aromaticity 0.161764705882
Instability index 57.9102941176
Isoelectric point 5.14447021484
Runs 9
Runs residual 0.00814785373609
Runs probability 0.0516595026398
Amino acid sequence MFVLCNDLESTSRSFSKILVRCDLAKIFPEYFWRMPNLSELLTCLTVFLWSLLNWIFNYV
SSRCEESI
Secondary structure LEEEELLLLLLLHHHHHHHHHLHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHH
HHLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL
LLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo
oooooooo