NONHSAT005531

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT005531

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

11471 nt

Genomic location

chr1+:119683297..119704421

Exon number

3

Exons

119683297..119683416,119689576..119689692,119693188..119704421

Genome context

Sequence
000001 AATGACGTCT GTTCAGAGAG CCAATCCCAG TCTCGCGACT CCTGCTTGCT GGGCGCGGCT TGGGCCTCCA GGCTGCGCAG 000080
000081 CGCAGCCGCT ATCGGGCGGA CTGCAGTTCT TGCCGAGCAG TCGCAATGAT TTGTATGACA GCTGCTagcc caagagagag 000160
000161 ttccagaaga gggctaccta acaggtgctg tggcatttag aagaggaatg gagccattgt caacgcacag cttgcagggg 000240
000241 agcaggagag tcagtctaag aaggaaatgt gatgatggaa acagaggttg gaagatggaa gaggacccag agtcaaggaa 000320
000321 tgcaggtaga aaagaaaagc ctggattctc ccctaaagcc tccagatgga acacagccct gcctccacct tgatttcagg 000400
000401 acttcttacc ccaagaatcg taagctaata catttgtttt tgtttttgtt tttgttttct ttgagatgga gtcttgctct 000480
000481 gctgcccagg ctggagtgca gtggactgat cttggctcac tgcagcgtcc atcttccggg ttcaagcgat tctcctgctt 000560
000561 cagcctctca agtagctggg attacaggcg cccaccacac ccggcTAATt tttttttttt ttaatacttt aagttttagg 000640
000641 ttacatgtgc acaacgtgca ggtttgttac atatgtatac atgtgccatg ttggtgtgct gcacccatta actcgtcatt 000720
000721 tagcattagg tatctctcct aatgctatcc ctcccccctc cccccacccc acaaccgtcc ccagtgtgtg atgttcccct 000800
000801 tcctgtgtcc atgtgttctc attgttcaat tcccacctat gagtgagaac atgcggtgat tggttttttc tccttgcaat 000880
000881 agtttgctga gaatgatggt ttccagcttc attcatgtcc ctacaaagga catgaactca tcatttttta tggctgcatg 000960
000961 gtattccatg gtgtatatgt gccacgtttt cttaatccag tctatcattg ttgaatattt gggttgtttc caagtctttc 001040
001041 ctattgtgaa taatgccaca ataaacatac gtgtgcatgt gtctttatag cagcatgatt tataatcctt tgggtatata 001120
001121 cccagtaatg ggatggctgg gtcaaatggt atttctagtt ctagatccct gaggaattgc cacactgact tccacaatgg 001200
001201 ttgaactagt ttacagtccc accaacagtg taaaagtgtt cctatttctc cacatcctct ccaggacctg ttgtttcctg 001280
001281 actttttaat gatcaccatt ctaactggtg taagatggta tctcattgtg gttttgattt gcatttctct gatggccagt 001360
001361 gatgatgagc attttttcat gtgttttttg gctgcataaa tgtcttcttt tgagaagtat ctgttcatat cctttgcccg 001440
001441 tattttgatg gggttgtttg tgtttttctt gtaaatttgt ttgagttcat tgtagattct ggatattagc cctttgtcag 001520
001521 atgagtagat tgcaaaagtt ttctcccatt ctgtaggttg cctattgact ctgatggtag tttcttttgc tgtgcagaag 001600
001601 ctctttagtt taattagatc ccatttgtca attttggctt ttgtcgccat tgcttttggt gttttagaca tgaagtcctt 001680
001681 gctcatgcct atgtcctgaa tggtattgcc tagattttct tctagggttt ttatggtttt aggtctaaca tgtaagtctt 001760
001761 taatccatct tgaattaatt tttgtataag gtgtaagaaa gggatccagt ttcagctttc tacatatggt tagccagttt 001840
001841 tcccagcacc atttatttat ttatttattt ttatttattt attttttttt tttttgagac ggagtctcgc tctgtcgccc 001920
001921 aggccagact gcggactgca gtggcgcaat ctcagctcac tgcaagctcc gcttcccggg ttcacgccat tctcctgcct 002000
002001 cagcctcccg agtagctggg actacaggcg cccgccaccg cgcccggcta attttttgta tttttagtag agacggggtt 002080
002081 tcaccttgtt agccaggatg gtctcgatct cctgacctca tgatccaccc gcctcggcct cccaaagtgc tgggattaca 002160
002161 ggcgtgagcc accgcgcccg accagcacca tttattaaat agggaatcct ttccccattg tttgcttttg tcaggtttgt 002240
002241 caaagatcag atagttgtag atatgtggca ttatttctga gggctctgtt ctgttccatt ggtctgtatc tctgttttgg 002320
002321 taccagtacc atgctgtttt ggttactgta gccttgtagt atagtttgaa atcaggtagc atgatgcctc cagctttgtt 002400
002401 cttttggttt aggattgact tggcaatgtg ggctcttttt tggttccata tgaactttaa agtagttttt tccaattctg 002480
002481 tgaagaaagt cattggtagc ttgatgggga tggcattgaa tctataaatt accttgggca gtatggtcat tttcatgata 002560
002561 ttgattcttc ccacccatga gcatggaatg ttcttccatt tgtttgtatc ctcttttatt tcactgagca gtggtttgta 002640
002641 gttctccatg aagaggtcct tcatatccct tgtaagttgg attcctaggt attttattct ctttgaagca attgtgaatg 002720
002721 ggagttcact catgatttgg ctctctgttt gtctgttgtt ggtgtataag aatgcttgtg atttttgcac attgattttg 002800
002801 tatcctgaga ctttgctgaa gttgcttatc agcttaagga gattttgggc tgagacgatg gggttttcta gatatacaat 002880
002881 catgtcatct gcaaacaggg acaatttgac ttcctctttt cctaattgaa tgccctttat ttccttctcc tgcctgattg 002960
002961 ccctggccag aacttccaac actatgttga ataggagtgg tgagaggggg catccctgtc ttgtgcccgt tttcaaagag 003040
003041 aatgcttcca gtttttgccc attcagtatg atactggctg tggatttgtc atagatagct cttattattt tgagatacgt 003120
003121 cccatcagta cctaatttat tgagagtttt tagcatgaag ggctgttgaa ttttgtcaaa ggcctttttt gcatctattg 003200
003201 agataatcat gtggtttttg tctttggttc tttttatatg ctggattaca tttattgatt tagcgtatgt tgaaccagcc 003280
003281 ttgcatccca gggatgaagc ccacttgatc atggtggata agctttttga tgtgctgctg gatttggttt gccagtattt 003360
003361 tactgaggat ttttgcatca atgttcatca aggatattgg tctaaaattc tctttgttgg ttgtgtctct gccaggcttt 003440
003441 ggtatcagga tgatgctggc ctcataaaat gagttaggga ggattccctc tttttctatt gattggaata gtttcagaag 003520
003521 gaatggtacc agctcctcct tgtacctctg gtagaattcg gctgtgaatg catctggtcc tggacttttt ttggttggtc 003600
003601 agctattaat tattgcctca atttcagagg ctgtaattgg tctattcaga gattcaactt cttcctggtt tagtcttggg 003680
003681 agggtgtatg tgtcgaagaa tttatccatt tcttctagat tttctagttt atttgcatag aggtgtttat agtattctct 003760
003761 gatggtaatt tgtatttctg tgggatcagt ggtgatatcc cctttgtcat tttttattgc gtctatttga ttcttctctc 003840
003841 ttttcttctt tattagtctt gctagcggtc tatcaatttt cttgatcttt tcaaaaaacc agctcctgga ttcattgatt 003920
003921 ttttgaaggg ttttttgtgt ctctatttcc ttcagttctg ctatgatgtt atttcttgcc ttctgctagc ttttgaatgt 004000
004001 gtttgctctt gcttctctag ttcttttaat tgtaatgtca gagtgtcagt tttagatctt tcctgctttc tcttgtgggc 004080
004081 atttagtgct ataaatttcc cgctacacac tgctttgaat gtgtcccaga gattatggta tgttgtgtct ttgttctcat 004160
004161 tggtttcaaa gaacatcttt atttctgcct tcattttgtt atgtacccag tagtcattca ggagcaggtt gttcagtttc 004240
004241 catgcagttg agcagttttg agtgagtttc ttaatcctga gttctagttt gattgcactg tggtctgaga gacagtttgt 004320
004321 tataatttct gttcttttac atttgctgag gagtgcttta cttccaagta tgtggtcaat tttggaatag gtgtgatgtg 004400
004401 gtgctgaaaa aaatgtatat tctgttgatt tggggtggag agttctgtag atgtgtatta ggtacgcttg gtgcagagct 004480
004481 gagttcaatt cctgtatatc cttgttaact ttctgtctcg atctgtctaa tgttgacagt ggggtgttaa agtctcccat 004560
004561 tattattgtg tgggagtcta agtctctttg taggtcactc aggacttgct ttatgaatct gggtgctcct gtattgggtg 004640
004641 catatatatt taggatagtt agctcttctt gttgaattga tccctttacc attatgtaat ggccttcttt gtctcttttg 004720
004721 atctttgttg gtttaaagtc tgttttatca gagactagga ttgcaacccc tgccttttct tcttttccat ttgcttggta 004800
004801 gaccttcctc catcccttta ttttgagcct atgtgtgtgt ctgcacgtga gatgggtttc ctgaatacag cacactgatg 004880
004881 ggtcttgatt ctttatccaa tttgccagtc tttgcctttt aattggagca tttagcccat ttacatttaa ggttagtatt 004960
004961 gttatgtgtg aatttgatcg tgtcattatg atgttagctg gttattttgc tcattagttg atgcagtttc ctcctagcct 005040
005041 tgatggtctt tacaattttg catgtttttg cagtggctgg taccggtttt tcctttccat gtttagcgct tccttcagga 005120
005121 gctgttttag ggcaggcctg gtgatgacaa aatctctcag catttgcttg tctgtaaagt attttatttc tccttcactt 005200
005201 atgaagctta gtttggctgg atatgaaatt ctgagttgaa aattattttc tttaagaatg ttgaatattg gcccccactc 005280
005281 tcttctggct tgtagagttt ctgctgagag atccgctgtt agtctgatgg gcttcccttt gagggtaacc cgacctttct 005360
005361 ctctggctgc cctcaacatt ttttccttca tttcaacttt ggtgaatctg acaattatgt gtcttggtgt tgcccttctc 005440
005441 gaggagtatc tttgtggcat tctctgtatt tcctgaatgt gaatgttggc ctgccttgcc agattgggga agttctcctg 005520
005521 gataatatcc tgcagagtgt tttccaactt ggttccattc tccctgtcgc tttcaggtac accaatcaga cgtagatttg 005600
005601 gtcttttcac atagtcccat atttcttgga ggctttgttt gtttcttttt attctttttt ctctaaactt ctcttcacgc 005680
005681 ttcatttcat tcattttgtc ttccatcact gatacccttt cttccagttg atcgcatcgg ttactgaggc tgtgcattcg 005760
005761 tcatgtagtt ctcgtgctgt ggttttcagc tcagtcaggt cctttaagga cttctctgca ttggttattc tagttatcca 005840
005841 tttgtctaat tttttttcaa agtttttaac ttctttgcca ttggttcgaa cttcctcctt tagctcggag tagtttgatc 005920
005921 ttctgaagcc ttcttctctc agctcgtcaa agtcattctc catccagctt tgttccattg ctggtgagga gctgtgttcc 006000
006001 tttagaggag gagaagcact ctgattttta gagtttccgg tttttctgct ctgttttttc cccatctttg tggttttatc 006080
006081 tacctttggt ctttgatgat ggtgacttac agatgggttt ttggtgtgga tgtcctttct gtttgttagt tttccttcta 006160
006161 acagtcagga ccctcagctg caggtctgtt ggagtttgct ggaggtctac tccagacctt gtttgcctgg gtatcagcag 006240
006241 cggtggctgg agaacagcag atattggtta actgcaaatg ttgctgcctg atcgttcctc tggaagtttt gtctcagagg 006320
006321 agtacctggc cgtgtgaggt gtcagtccgc ccctactggg gagtgcctcc cagttaggct acttgggggt cagggaccca 006400
006401 cttgaggagg cagtctgccc gttctcagat ctcaagctgc atgctgggag aaccactact ctcttcaaag ctgtcagaca 006480
006481 gggacattta agtctgcaga ggctattgct gtcttttgtt tgtctgtgcc ctgcccccag aggtggagcc tacagaggca 006560
006561 ggcaggcctc cttgatctgt ggtaggctcc acccagttcg agcttcctga cctctttgtt tacctactca agcctgggca 006640
006641 atggcgggca cccctcccgc agcctcactg ccgccttgca gcttgatctc agactgctgt gctagcaatg agtgaggctc 006720
006721 tgtaggcata ggaacctccg agccaggtga ggaatataat ctcctggtgt gccgtttgtt aagcccattg gaaaagtgca 006800
006801 gtattggggt gagagtgacc caattttcca ggtgccatgt gtcacccctt tctttgacta ggaaagggaa ttccctgacc 006880
006881 ccttgcgctt cctgggtgag gtgatgcctc gccctgcttc ggctcatgca cggtgcgctg cacccactgt cctgcaccca 006960
006961 ctgtccagca ctccccagtg agatgaaccc ggtacctcag ttggaaatgc agaaatcacc cgtcttctgc gtcgctcacg 007040
007041 ctgggagctg tagactggag ctgttcctat ttggccatct tggctccacc ccacacccgg ctaatttttt tgtattttta 007120
007121 gttgagacga ggttttgcca tgtgctggct aggttgttct cgaactccta acttcaggtg atccacctgc cttggcctcc 007200
007201 cgaagtgctg cgattacagg tctgagccac tgcacccagc catttgggtt gttgtaagcc ttcaagtttg tgacaccttg 007280
007281 ttagagaagc aataggaaac taatacaAGT TCTATTCACT GCATCTTAAG AGAAGAAAGC TGGGCAGGTA AGGCAGGGAC 007360
007361 AGTTTGTTGA TTCCTTATTT AATAAGTAGC TATTGAGCAC CCCTCCTCAC TTTTTTGGTG GAACAGTGTG TAGTAATATG 007440
007441 AGGTAAAGAA CATAATTTGT GCTCTCAGAA GCTTACTAGT TAGCAGCTAC AGCTATGGCT AGTGAATGGC CAGCCTTGAA 007520
007521 TTCAAGGGGG TAGGATTTGC ACCTGACTCG AGACCAATGC TTAGACTTCC AGATGCAACA GCTGGGAGCC TCCTTCCAGG 007600
007601 ATTTGATCTC AACACAGACA AGAGTGTTTA TTCACTCATT TATTAGTTGA CTCAACCACC ATTTAGTGTA TACGTTGATA 007680
007681 TATCCATTTT AGCAAAGAAA ACAGGGAGGA CATGAAAGGG GAACTTTTAC ATCTTAATGT AATTTTTTTA AAAAAGCAGT 007760
007761 AGGATTAAGT GTGTGTGTGT AATTTAATTT GAAGATTTCC AGTATTTTTT CATGTTTTAA TTAATTGttt tgagacaagg 007840
007841 tctcactgtc tcacccaggc tagagtgcac aggtaaaatc atagctcact gtagcctcaa tctcctggcc tcaagtagaa 007920
007921 tctcccacct tagcctccca aatagctatg actacaggca tgtgccacca cacccaggca atttatttta ttttattttt 008000
008001 ttattttaga aaagggttct cactgtgttt cccaggctga tcatgatctc ttggcatcaa gcagtcctcc cacctcagcc 008080
008081 tccaaagtgc tgggattaca ggTCAtcaag cagtcctcca gcctcagcct ccaaagtgct gggattacag gtgtgtgcca 008160
008161 tggcatccag cccagtattt tttttttttt ttAATTAAAA AAATggtggc tcacgcctgt aatcccaaca ctttgggagg 008240
008241 ccgaggtggg tggaccacga ggtcaggagt ttgagaccag cctggccaac atggtgacac cccatctcta ccaaaataca 008320
008321 aaaaaattag ccaggcatgg tggcgtgcac ctgtaatccc agctactctg gaggctgagg cagaagaatt gcttaaatcc 008400
008401 caggggcaga ggttgcatga gccaagatca tgccactgca ctccagcctg ggcgacagag caagactccg tctcagggga 008480
008481 aaaaaaaaaa aaggaaaTAT TTTCCGAAAG CTAGTCTGAG CCAGGCAGTA TGAAAGACAC TGAAGATAAA AGAGCAGTCT 008560
008561 TGAACTCTAC ACACTTACAG CTAAATAGGA GTGACAAGTG AACAGGGGAT TGCCCCACCT GAAGCTCTTG TGACCAGAGA 008640
008641 GAGAAACAAG GTTTCTGTGG AGGCCCAGAG GGGTCCTTCA ACCCTGCTTG GAGGACAGTA CTGGGGTGGA GAGGGTCAAG 008720
008721 TAGAGATTCC CAAAAGTAAC ATCTCAACTG AGCAGTCTGA TCCTTAGCAA GGTTCGGGCC CTTTGGCCTT GCCTACCCTG 008800
008801 GCCTTGGTTG TTTTGCTAAC CAGAGCCAGC TGTGTTGTGG GTGTCTTTTC CTCTCTCCTG GTGTCCCCGC CTGGACCCTT 008880
008881 CACTCTTTGC CTCCCACGCC CTGGCATTAC ACAGGCATTT TCAGACCCTT TCCCAGGATT CTGTTTATAG CCAGCATCCT 008960
008961 GTGCAGCTCA TGAGGAGTCA TAAGCCCATG ATGAGATAAG AGGAGGAACT TGGAAGAAAA CATGATGAAC ATGGACAAAG 009040
009041 CCAAGGGGAA AAATATGCAT GTTTTCATTT GCTTTTCCCA AACAGGATGC TTTCACACCA CTGTCTATAA TTCAAACAGT 009120
009121 ATGTTTCTGC TTAACATACT GTGAAGATGT GAAGCCACAT GAGAAATGTT CTCCCAAGAT GGAGTTAGTG TCCCTCCTGG 009200
009201 AGCTCCCTCA GCACCCTGTG CTCCCACATT TCAAAGGATC ACTCACACCC TAGCCCATTT CCTCACTGTC TAATGTTCTC 009280
009281 CACAGACCCC TAAGATCCTT CTAGAGCCAT GACCAGCCTT GCTTGAGGTT GTATGGCATA TACCCTGTGC ACAGTGAATG 009360
009361 CTGAATAAAT AACTGCTCCG TTGAACTGAA TAGAATAAAA CAGCATAGAT ACTAGTTTGG TCAAATTTTA AAACATCAGA 009440
009441 ACTTCAACTC TCATTTTGGA AGGTGGGGAT GTGATTAAAA TTCAATTTTA ATTGATTATT TCTCAGAAAA CATAAAAATG 009520
009521 TTCCTACAAT TCTCAAATAG CTATTTACCA ATTTCATTTT CAACCTGATT TGACACTCTG ATGAGGGGGG AAGGTTGAGT 009600
009601 ACATCATAAA AACTTCAGTT TACCTCTAAC TTGTGATTGT GTGTGAAGAA AGAGCACAGG ATATAGAAGA GGGAAAAATG 009680
009681 CTTTGAAAAC TCTAAAAGTG GGTTGCAAAT GTTAGTTTGT TTTCACACAA TGGACACAAA AATCGCCCGT GCATTCAGTC 009760
009761 ACTTGCAGAC TGAAGCAAAC AGCTGTATTT GGATGAGGCA GAGGAATGGT GGGAGGAACT GTTTCTTGTT GCACTGAGCA 009840
009841 TTCAGTTGTT CTGGGCTTTG CCCAAGGAAA AACAGATGGT TTTCCTTGCT GGAATTGGTC AGGGAGGGCA GGGGAAGTGC 009920
009921 CCAGGCTTTG CTTTCCCATA ATTGACAGTA CAGAGTTTTA AGAAATATTT GAACAGTAGC ACTGTTCTGG TACCTACTTG 010000
010001 GGAAAGCCAA TTCTTGATTT TAAAAAATCA AATCAAAGCA GTGACAGTGA CATATTCTGC TTCCATTTCA TACCATTCCT 010080
010081 GACTTCTTAG AAGCAGTTGA TGCTAGTGGT CTTCTCTGGC AGGGATTGCT AGCCCTGGCT TTGCAGCAGC CCATGGAGCT 010160
010161 GCCAGTTCTC CAGGGTAATT GCAAAATACT GCTAAGTATT Ctaaaaatga aattaaatat tcattttatt ttaatttaCA 010240
010241 TGTGCCATCC AATACTTTTA GAAGATGTCA GTACCATGGA ATGACATGAC CAACAATAAT ATGTTGCAAC TCTGAGATAC 010320
010321 AGCTAGAAAT TCTCCGAATA AGATGCTGAT GGTCCTGCAG TCCAATGCTG TGTGATTTTC ACTGTGGCCA GCTATACAAG 010400
010401 ACTTAGCGTA TACTTCTCTC TGTGTAACTG TAAAAAATTT TGTAAGTCTA AGAGGGTAAT ATATTCTTTC ATAAAACCTC 010480
010481 AATCTAGTGA GTTCTAATCA TTCTTGATCT TTCTCAAATA AATACTAGTC AAATCTTTCC CAATAACTAA GTAACTAAGC 010560
010561 ATTCACGTTT TACAACTGTA ATGTAGTTTT GGTATGAGAA AACTATTTCC TGGTCTCCAG GATCTAGAAA GTAAACATGT 010640
010641 AACAAACAAT TAGGAATGTG GTATCGGGTA GTCAGATGTT CTACACGTCT CCAGCCTAAG CTGTCCACTT CGGATTTCTT 010720
010721 GCTCTTTTCC TTTTTGCTTA AGCATATCTT GGTATGTTGC CTGGAAGTTT ATGTGTGTTA CTACAGCAGA ACAAAGAATT 010800
010801 ATGTAATATA AAGCCCAACT TGTTTTTCTT TTCCCTACCA GCTGTACTAT AACTTAGACA AAACTCAACC ATTTTCTTTC 010880
010881 ATTATGTACA GTGGCTATTA AAAAGAAAGG ATGTAGAAAA ATTTTTTTCA GGAAACAGTG GAAAACTAAT GCGTCATGAT 010960
010961 CTGCTTAACA GGGGACTGTA AATAGAAGCA AGTCCAGATC ATGGAAATTG CTTCtttaaa atattttttt tcaattttaa 011040
011041 aaGGAATACA TTCACATGGT TTAAAAAAAC CCCTCAAACT AAAGAAGAAT ACAGAATAAG AAGTAAAAGT TCTACCCTCC 011120
011121 AACCTACTAC CCCAACTCCT GAATCCCACT GCCAAGAGAA ACAGTCATTT GTTGTGCATC TTTCTAGAAG AATTCTATGC 011200
011201 ATATTACAGA GGTGTCACAA ATACCCACAT GCTTTCTTCC CTTACAAGCT CTGTGACTTG ATTTTTCTCT TTACTGTGCT 011280
011281 TTAAGCATCT TTGCATATTA GTAAACATAT ACACCTCAGT TAAAAAAAAT CAACAgctgg gtgtagtggt gcatacctgt 011360
011361 agtcccagca atttgggagg cagagaggca ggaagatccc ctgagcccag gaattctaat ctaccctggg catcttggca 011440
011441 agaccctgtc tcttaagaaa aaaactatcg c
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Predicted Small Protein

Name NONHSAT005531_smProtein_8042:8197
Length 52
Molecular weight 5646.4996
Aromaticity 0.156862745098
Instability index 92.6078431373
Isoelectric point 8.84185791016
Runs 7
Runs residual 0.0169869928169
Runs probability 0.0206424912307
Amino acid sequence MISWHQAVLPPQPPKCWDYRSSSSPPASASKVLGLQVCAMASSPVFFFFFN
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLEEEEEELLLLEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo