NONHSAT005581
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005581 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1373 nt |
Genomic location |
chr1-:120451878..120453236 |
Exon number |
1 |
Exons |
120451878..120453236 |
Genome context |
|
Sequence |
000001 ACATCAAAGA GGGCTATTTA CAAAGGATTA ATTACAAAAG TGTGTGTGCA ATGTCAGGGA CCGACACACA GTTGTGCAGA 000080
000081 AACCCGTGTT AGCATCAGCA GAGCTATTTC CACTTGTGGG CCCAAAAGGC CAGGAGAAGT CACTAGGACC TGGAAGCAGA 000160 000161 GTCCTGTAGA GCAGGTCCCC AACCCCCCGG GCCACAGACT GGATACCTTA GCCTGTGGGG AACCGTTAGG AACCGGGCTG 000240 000241 CACAGCAGGA GGTGAGCAGC AGGCAAGCAA GCATTACTGC CTGAGCTCCA CCTCCTGTCA GATCAGCAGT GGCGTTAGAT 000320 000321 TCTCATAGGA GCATGAACCC TATTGTGAAC TGCATATGTG AAGGATCTAG GTTGCGCACT CCTTATGATA ATCTAATGTC 000400 000401 TGATGATCTG AGATGGAAGA GTTTCATCCC CAAACCATTC CCTGGCCCCA GTCCATGGAA ATATTGTCTT CCACGAAACT 000480 000481 GGTTCCTGGT GCCAAAAAGG TTGGAGACTG CTGCTGTAGA GCAGGCTACC TCAAGAAGAG CTGTGACTTC CTTCAAAGCA 000560 000561 GACAGTGGGC CTTAAGCCCT CCCAGAAAGA AGCTAGGGAA TGAATGAATA CCCTGATCTC ATTTGCTTCA CTGGGCTCTC 000640 000641 TGTTTGCCGA CTCCAAGTGG AAGCCTGCAA ATATGGGAGC TGTTGATTAT AATCTATCAA TGTAAGTCAG CTTTCTGGCT 000720 000721 GGGAGCTTGG TGGAGAAGGA AAGAGAGTGA ATCTGAAGGG GCAAACATAT TACCTAAAAT AACATTCTCC TTCCAACTAT 000800 000801 ATTTCTGAGA AATTTCCACT GGTAACCTGT TATTGATGTG TCTAGGCAGA AAGCATAAAG TTAAAAAAAA GTACGTATTT 000880 000881 AGAATCCTGA CTTCTTTTTC TGATCTAGTA GTGTGTTTCT TCACCACTTT GGCTTTGAGC ACTCAAAGTG CAGACAGTCA 000960 000961 TCAGTAGTGG GATGGATAAA TTCTGGTACA TTCATTGAAA TGAATGCTAC GCATAAATGA AAAAGAGCAA CTTGCAACAA 001040 001041 CACGTAGTAT ATTCATCAAA ATAATGTTGA GCAAAATAAG CCAGACACAA GTAATACATT CTGTATGATT CCATTACATA 001120 001121 AGTTTAGGAA AAACCAACCA ATAGTAAATA GATAATCTGA ACAGTGGCTA CTTTTTGGGA GAAAGGTCTA GACTGAAGTG 001200 001201 AGAGAAAGAA GAATCTTTCT GGAGTCTGAA AGTATCTTGA CCTGGGTGGT GACTACATGA GTGTATATAT ACGTAAAATT 001280 001281 TCATGTAAAA TTTAACTTAA GATTTATGCA TTTGACTTAT GTAAATTATA CTTCAATAAA ATGTTTCTAC AATAACCTAA 001360 001361 AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT005581_smProtein_332:574 |
Length | 81 |
Molecular weight | 9156.4944 |
Aromaticity | 0.1125 |
Instability index | 62.96375 |
Isoelectric point | 9.50469970703 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0410142763085 |
Amino acid sequence | MNPIVNCICEGSRLRTPYDNLMSDDLRWKSFIPKPFPGPSPWKYCLPRNWFLVPKRLETA AVEQATSRRAVTSFKADSGP |
Secondary structure | LLLEEEEELLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLEEEELLLHHHH HHHHHHLLLLLEEEELLLLL |
PRMN | - |
PiMo | - |