NONHSAT005727
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005727 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1888 nt |
Genomic location |
chr1-:143424333..143467651 |
Exon number |
3 |
Exons |
143424333..143426080,143465380..143465438,143467571..143467651 |
Genome context |
|
Sequence |
000001 GCCATTTTCC TCCGGAAGTG CGGATCCCAG CGGTGGTCGT GTAGCTGAGC AGGCCTGGGG CTTGGTTCTA TGTCCCTGTG 000080
000081 GCTATGTTTC CAGTGTCCTC TGGGTGTTTC CAAGAGCAAC AAGAAACGAA TAAATCTCTG CCATAGGAGT TTTAGCCAAT 000160 000161 TCAGAGGCCT TGCTCCCCAC AATTTGGAAA ATTCCTTTGG ATTTGACCAA GTCAGGAAGA GAAGGGAGAA AAGTGAAACA 000240 000241 ACAATAAAGC CCCAAGCATA AACAAACAAA AAGAGTTAAG CAAAACAACA AATGCACAAT TCATATGATT ACTGAGTGTT 000320 000321 CTAATGGTAA GGAGAAACTA AAAGCAGAAA TTAAAAGCAG CTGGTGAGTA ATCTTAAATT TTAGTCATTA AGGACAAATT 000400 000401 TTAAGACAAA ACTCTAATTC AGCTACTCAC CTGGAAACAA GGCTCAGGCT GGTGATCGTT CTCTGCCATC TTAGAAGCTG 000480 000481 AAAACAACTT ACACTCACCT TCCCTGTCAG AAGCAAGCTG AAACTCAGGA AAGGAGGTGC CTGCTCTCCA TCACCACAGA 000560 000561 AGCAGGAAAA CTTGCCTTCC TTGTTGGAAA TGAGTAAAAC TTCAGAAAAG GAGTTGTACA GAAAAATCAA ACTTAGATCT 000640 000641 CAACCAGATT TTGGGAGACC AGGGACTCTT TGCAGGGGAG AAGCTCCACA ACCTCAGCAA ATTATCCTGT TGGTTTGGGC 000720 000721 AATAAAGATA GCCCATGTTG GTATCAATCA ATAACGAGAT TTATCAAAGG TCAGGGCCAC CTTTGTAATG ACCTTCTCTG 000800 000801 TCTTTTTTTA TCTTTATTGG TATATACGTT TTGTCGAAAC TGGGAGTGTA ACACCTGATT TCTTCTGTTT TCCATTTGCT 000880 000881 TGAAAGATTT TTCACCATTC CTTCATTTTG AGCCTATGTA TGGCACTGCA TGTGAGATGG GTTTCTTGGA GACAGCATAC 000960 000961 TCAAATGGGT CTTTGTTCTT TATCCAGCTT GCCCCCCTGT GTCTTTCAAT CGGAGCATTT AGCCCATTTC CATTTAAGGT 001040 001041 TAGTAATGGT ATGTGTGGAT TAGATCCTGT CGTCATGCTG TCAGCTAGTT ATTTTGCAGA CTTGTGTATG TGGTTGGTTT 001120 001121 TTAGCATTAC TGGTCTGTGT ACTTCGGTGC ATTTTTGTAG TGGCTGGTGA TGGTCTTTTC TTTCCATATT TAGTGCTTCA 001200 001201 TTCAGGAGCT CTTGTAAGGT AGATCTGGTG ATAATGAATT CTCTCAGCAT TTGCTTGTCT GAAAAGGATC TTGTTTCTCC 001280 001281 TTCACTTATG ATGCTTAATT TTGCTGGACA TGAAATTCTG GGTTGAAATT TCTTTTTCTT TTAACCATGT ATAATAACAC 001360 001361 CATGTTATTA TATGGTATAT CTGTCTCTGC CATACTACGT GAAATTTCTT TTCTTTAAGA AGTTGAATAT CTTTTCTGGC 001440 001441 TTGTAGGGTT TCAGCTGAGA AGTCTGCTAA GTCTGATGGA ATTCCCTTTG CAGGTGACGT TGCCTTTCTC CCTAGCTGCC 001520 001521 TTTAACAGTG TTTCTTTCAT TTTGACCTTG GAGAATCTGA TGATTATATG TCTTGGGGAT GATCTTCTCA TGGCTTATCT 001600 001601 TACTGAGGTT CTCTGGATTT CCTGAATTGG AATGTTGGCT TGTCTGGATA GGTTGGGGAT ATTCTCATGA ATGATATTCT 001680 001681 GAAGTATGTT TTCCAAGTTG GTTCCATTCT CCTCATCTCT TTCACGTACA CTAATCAGTC ATAGATTTGG TCGTTTATAT 001760 001761 AATCTCATAT TTCTTGGATG TTTTGTTCAT TCATTTTCCT TCTTTTTTCC CCCATTCTTG TCTGCCTGTT TTATTTCAGA 001840 001841 AAGCCAGTTT TCAAGCTCTG GGATTCTTTC CTCTGCTTGG TCTATTCT |
Predicted Small Protein
Name | NONHSAT005727_smProtein_1475:1624 |
Length | 50 |
Molecular weight | 5537.569 |
Aromaticity | 0.122448979592 |
Instability index | 44.112244898 |
Isoelectric point | 3.38507080078 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.043396337514 |
Amino acid sequence | MEFPLQVTLPFSLAAFNSVSFILTLENLMIICLGDDLLMAYLTEVLWIS |
Secondary structure | LLLLLEELLLHHHHHHHLHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii |