NONHSAT005837

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT005837

Source

NONCODE4.0

Same with

,

Classification

sense

Length

449 nt

Genomic location

chr1+:144814560..144816049

Exon number

2

Exons

144814560..144814894,144815936..144816049

Genome context

Sequence
000001 GTGCTGACCT TCTGCTTCGA GGTCTCCTTG AGGACACTGT TTCAGAAATC TCTGTTGCAA TATTTGAGCG GATCACTCAA 000080
000081 CCCTTTCCAC TCTTAATTTT TCTCTACCAT CTCACCTTAG GCAATATAAA GTCCTGGTTC ACGCTCAGGA ACGAGAGCTG 000160
000161 ACCCAGTTAA GGGAGAAGTT GCGGGAAGGG AGAGATGCCT CCCGCTCATT GAATGAGCAT CTCCAGGCCC TCCTCACTCC 000240
000241 GGATGAGCCG GACAAGTCCC AGGGGCAGGA CCTCCAAGAA CAGCTGGCTG AGGGGTGTAG ACTGGCACAG CACCTTGTCC 000320
000321 AAAAGCTCAG CCCAGAAAAT GACAACGATG ACAATGAAGA TGTTCAAGTT GAGGTGGCTG AGAAAGTGCA GAAATCGTCT 000400
000401 GCCCCCAGGT AACACTGAAT ACTCAGGAAC AATTAATGGA TGGTAACAT
[back to top]

Predicted Small Protein

Name NONHSAT005837_smProtein_212:445
Length 78
Molecular weight 8950.315
Aromaticity 0.0779220779221
Instability index 70.7
Isoelectric point 12.0119018555
Runs 9
Runs residual 0.0191981931112
Runs probability 0.0137196019549
Amino acid sequence MSISRPSSLRMSRTSPRGRTSKNSWLRGVDWHSTLSKSSAQKMTTMTMKMFKLRWLRKCR
NRLPPGNTEYSGTINGW
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLEEEELEELLLLLLHHHHHHHHHHHHHHHHHHHHHH
LLLLLLLLLLLLEELLL
PRMN -
PiMo -