NONHSAT005896
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005896 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1709 nt |
Genomic location |
chr1+:145394428..145396136 |
Exon number |
1 |
Exons |
145394428..145396136 |
Genome context |
|
Sequence |
000001 CTCTTGAATG GTGCCAATCT TGGCTTCCAC CCACCTGGCA AACCAACTTA ACCTACGCCA GCAAAAGCAA CAGTTAAAGC 000080
000081 TAATTTAGCA GGAACAAATG TAAGGCAAAC AACTCCAGGC TTTCGGGAAC AGAAAAAAGT TCTCCGGTGG ATCAATAACT 000160 000161 AATTCAAAGT AGTGGACCCA GCACTCTGGA GTGGCAGCCT ATATTCATCA AATAAGACTG CAACTGTTAA CTCCCTACTC 000240 000241 GCTGCCCTAC CCGTTCGTCT TTGCTCCTCC TTTTCTTTGC TCTTCCGCTT CTCTCCTCCG CCTCCTCAAC TTCTTTTCTA 000320 000321 GAGCCCTCTC CTCTTTTTCC TGACCTTCCT AAAATGGTTG TATTTTACAG CCCTTTGCGG CTGATGAAGG CTTCAAAACC 000400 000401 TAAAAAGCAA ACAGATGCTC CCTAACACCT AGCTGAGAAT ATTTTAACTC ACTACAAAGG CCTTTCAAAA CCCCATTCAA 000480 000481 AATTTCCCAC CAACAAGAAG AGAACCAGTA TTTCCCTCTG GAGCCGTCCT AAGGCTGTTC TCCCTGGAGC AGTGTCGGAG 000560 000561 CGATTTTGGA CTCTTCTCAG AGCTGCTCAG CTTGTCTGCC TTCGCCCAGT TGAGAAGCCC ATCGTGGATT CGAAGTATGT 000640 000641 GGTCACTACA GACACTAGAA TCCCCAGATT CCTCttttct tttttttttc ttttttttga gaccgagtgc aatggcgtga 000720 000721 tctcggctca ccgcaacctc cgtcttccag gttcaagcaa ttctcctgcc tcagcctccc gagtagctga gattacaggc 000800 000801 atgcacctcc acgcccggct aattttgtat ttttagtaga gaaggggttt ctccgtgttg aggctggtct cgaactcctg 000880 000881 acctcaggtg atccgcccac ctcggcctcc caaagtactg ggattacagg cgtgagccac cgcgcccggc cCAGATTCCT 000960 000961 CTTTTCTTGA TGAATTTGGG GTGAATGGAG ATGATTTCTG GAATCAGTTA CCATAAAAGG ACAGTAGCCG CTGTGGCGAT 001040 001041 TTAGAAGTTC ATGTTTCCAT GGTAGCTAAG CGAGAGGGTT AAATAAAAAC ACAgcgccca acgtggggct cgaacccacg 001120 001121 accctgagat taagagtctc atgctctacc gactgagcta gccgggcACT GATTACTGGC GTCTTCTTAT GTGGAATCAT 001200 001201 TTTCCACTGA CGGAGCGGTT GTATGATCTA ATTGCATATT ATTGCGTGTG AAAGAAGTTT CAGGACCTAG GACTGGTGGA 001280 001281 CACGGCAGTA GCCTTTTCAT AATAGCTTTT TGCCATGAAG GAATTCGGGG TTTAGAGAGC GATGGGGGCT GCAGAGAGCC 001360 001361 AGGAAGTCTC GCGGAGGACT CGGGAATCAC GAGTCCTGCC TGAAACCTTA GTGTTTTCCG CACATTCCTT CCACTGAGGG 001440 001441 AACCTCCTCA CCCACTTCAG AGGAGGGTGC GAAAGAGCCC AAGGAAACTC AGATGAGAGG CGCAAAGACC TCTCTGCAAA 001520 001521 GCATTTTAAT TCTCCATCCT GGAAGAGGCA CTGAGTTCCA GAGTCACAAG GGAAGGGTTC TCTCCTCTGC TCAAGTGAAG 001600 001601 GCCAAAAGAA CAACCGTGGT CCCAGCTCCG TGGGCCTCCA TATCGCTCTA AAGCTTCCCG CCTGGGCTGC TTAGCACCTT 001680 001681 GGTGGGCGAG CCGCAGTGTG AGCCAACTG |
Predicted Small Protein
Name | NONHSAT005896_smProtein_353:424 |
Length | 24 |
Molecular weight | 2636.1829 |
Aromaticity | 0.0869565217391 |
Instability index | 66.5917391304 |
Isoelectric point | 10.171081543 |
Runs | 5 |
Runs residual | 0.0103519668737 |
Runs probability | 0.0389683801449 |
Amino acid sequence | MVVFYSPLRLMKASKPKKQTDAP |
Secondary structure | LEEEELHHHHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |