NONHSAT006226
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006226 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2081 nt |
Genomic location |
chr1+:149580524..149582604 |
Exon number |
1 |
Exons |
149580524..149582604 |
Genome context |
|
Sequence |
000001 CTTGATAATC CCCCTGATTC CCAGACTCCT TGGAATAGCT CCACAGCTAT CAGTGGTTCT GCCACAGGTT CAGAGCCTTC 000080
000081 CCAGTACTGC CTTCTTATTT GAGAGGTGTG CTAAGAGCTA TAAAGCAGAG GCTTCAATTG TACACAATTG GGAAGTTTAG 000160 000161 GCAAAAGTCA TTTCTTCCCT ATATTTTGTC ATGCTTATCT CCTGTCTCTT TCTGTTTTAC AGATTAGCAA TAAACTCCTT 000240 000241 AAAACCCAAA GGTTTGGGCT TCTGTTCCTT TCACTTGCAG TCAGACATGG AGTTAGTGGT AGAAGAAACA GAAGGGGTAA 000320 000321 CCTGCATGGT GACAGCTACT GAGGGGATGG ATAGGAAAGC AGGCTGAGTC CCTGGGGCCA GTGGTTACCA AAGCCAAGGA 000400 000401 GAGAGCAAGG GGAGCCCAGT GGGCCTGGCC ATGGACTGCT CTGGAATTCC GAGTGTGAAC TTTCAGCCAA GAAGGTAGTG 000480 000481 TGAAAATATT ACTGTGAGGT TTTAAAAGTA CACAAATAAC AATTGTTTTT TGTAAAAAGA AAAAAAAAAA GTTAGAAAAA 000560 000561 GAGATATGCC AAAAAGAAGA AAGTAAAAAA TACATGACTT CTGTCTTCTG TTAACATATT AAAATTTATG CTTTTAGATT 000640 000641 TTTATGTGTC TATATACATG TAAAATATAT ATGCATCCCC AAATTGTATT ATACTCTTTT GAGACCTCAC ATTTTTTTCA 000720 000721 CCCAAGAATA TAATATTAAT TTCTTTCCTT TAGAAAAGAC ATGAGACTAA AGAATGTTTA TTGAGTTGAG AGTTTCCCAA 000800 000801 TCAAGGAGTA TGACTCTGta taataataaa tctaatgttt tattagaaat tataataaaa ttagaaattt aatatttGGC 000880 000881 AGGATGTGAG TTGCCTGCAT ATGTACACCC TTTATTATAT GACTAGACAC TCTTTTGTGT GGTCATGGAT ATATTGGCAT 000960 000961 CTTTTGAAGT GTATCCTTTT TGTTTCAGGA GCTTCTGTCT AGATGAATAG CAAGTGTGAC ACTGATAATA GTAATCGAAt 001040 001041 attcctccaa gtacaggctc cttcctcttt ctcctggacc tttgcacatg ctgcctggaa aactcaccca caacctactt 001120 001121 tccatcctct ccttcggctc atccctgctc agccctcttt gttgagatat ttgccaagcc agattctctg agaagccttt 001200 001201 cctggcatct tcgtctatat aattctgcta gttgtttcta aaactatgtt gttagtgtat attgtaatca cctatttatg 001280 001281 tctgtttgac tgtgagcctc ttggagatgg gaattctctc ctatgcattg cggtttcccc agcccctagc acactgtcta 001360 001361 gcccagtatt ccttctcagt aagtaggtgt tgaatgaCTT ACAAAATGAA TGCTAAAAGA CCTGGTAGAC AAGAAGGAAT 001440 001441 TTCTTAGCCT AAATGACCAG ATGTGGAGAA GATACTCAAA CACTTCAGGG TCCCCAATCT GGTGATGTCA CTTGCAGTGG 001520 001521 AATTTCATAT GAATCCAGTG TGACAGAAGT TGCCTAGTCA AGTTGTAAGT CCTCTTCTCT gggtcacatg ttcaaatact 001600 001601 tttaggggac agataatgca atatttaaga tacaggaagt gatgaggact gtggcacact ggagagTTTG GACTCCAAGA 001680 001681 GTAATTAATT CAGTTGAAAA AATCAACAGC ACTCTGTTGA TCAAGCAAAC TTTCTAAGGG CCCTAATCCA CCTGGGCCTG 001760 001761 CAGTATGTAA TTCCATAACT CATGGGATGC CATCAAGAGA GACAATCTAC TTGATTGTTA AAGGGCCTTT GTTTTCTTTG 001840 001841 GAGTTCCCCA GGAAGGAGAA ATGTATGTGT GTGCAGGGGT GAGGAGGGGG GGAGAGTGAA GAAACAATAC TATCCCCTTA 001920 001921 AAAAGTTTTG TCAGTTTTCA TTATGAAAGA AGATCAAACG TGCCCACTCC AGAAATCTTG GCATATGCAG TTATTTTGAA 002000 002001 GCCATTCAGC GTTCTTCAAG ATGTCACAAT GAAAAGAGTG ATGatttttt aaataaaaaa ttaaCATGTT TCTCTTGGCA 002080 002081 A |
Predicted Small Protein
Name | NONHSAT006226_smProtein_773:871 |
Length | 33 |
Molecular weight | 3796.5004 |
Aromaticity | 0.0625 |
Instability index | 82.16875 |
Isoelectric point | 8.25408935547 |
Runs | 7 |
Runs residual | 0.0271045918367 |
Runs probability | 0.0340929164459 |
Amino acid sequence | MFIELRVSQSRSMTLYNNKSNVLLEIIIKLEI |
Secondary structure | LEEEEEELLLLLEEEELLLHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |