NONHSAT006226

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT006226

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2081 nt

Genomic location

chr1+:149580524..149582604

Exon number

1

Exons

149580524..149582604

Genome context

Sequence
000001 CTTGATAATC CCCCTGATTC CCAGACTCCT TGGAATAGCT CCACAGCTAT CAGTGGTTCT GCCACAGGTT CAGAGCCTTC 000080
000081 CCAGTACTGC CTTCTTATTT GAGAGGTGTG CTAAGAGCTA TAAAGCAGAG GCTTCAATTG TACACAATTG GGAAGTTTAG 000160
000161 GCAAAAGTCA TTTCTTCCCT ATATTTTGTC ATGCTTATCT CCTGTCTCTT TCTGTTTTAC AGATTAGCAA TAAACTCCTT 000240
000241 AAAACCCAAA GGTTTGGGCT TCTGTTCCTT TCACTTGCAG TCAGACATGG AGTTAGTGGT AGAAGAAACA GAAGGGGTAA 000320
000321 CCTGCATGGT GACAGCTACT GAGGGGATGG ATAGGAAAGC AGGCTGAGTC CCTGGGGCCA GTGGTTACCA AAGCCAAGGA 000400
000401 GAGAGCAAGG GGAGCCCAGT GGGCCTGGCC ATGGACTGCT CTGGAATTCC GAGTGTGAAC TTTCAGCCAA GAAGGTAGTG 000480
000481 TGAAAATATT ACTGTGAGGT TTTAAAAGTA CACAAATAAC AATTGTTTTT TGTAAAAAGA AAAAAAAAAA GTTAGAAAAA 000560
000561 GAGATATGCC AAAAAGAAGA AAGTAAAAAA TACATGACTT CTGTCTTCTG TTAACATATT AAAATTTATG CTTTTAGATT 000640
000641 TTTATGTGTC TATATACATG TAAAATATAT ATGCATCCCC AAATTGTATT ATACTCTTTT GAGACCTCAC ATTTTTTTCA 000720
000721 CCCAAGAATA TAATATTAAT TTCTTTCCTT TAGAAAAGAC ATGAGACTAA AGAATGTTTA TTGAGTTGAG AGTTTCCCAA 000800
000801 TCAAGGAGTA TGACTCTGta taataataaa tctaatgttt tattagaaat tataataaaa ttagaaattt aatatttGGC 000880
000881 AGGATGTGAG TTGCCTGCAT ATGTACACCC TTTATTATAT GACTAGACAC TCTTTTGTGT GGTCATGGAT ATATTGGCAT 000960
000961 CTTTTGAAGT GTATCCTTTT TGTTTCAGGA GCTTCTGTCT AGATGAATAG CAAGTGTGAC ACTGATAATA GTAATCGAAt 001040
001041 attcctccaa gtacaggctc cttcctcttt ctcctggacc tttgcacatg ctgcctggaa aactcaccca caacctactt 001120
001121 tccatcctct ccttcggctc atccctgctc agccctcttt gttgagatat ttgccaagcc agattctctg agaagccttt 001200
001201 cctggcatct tcgtctatat aattctgcta gttgtttcta aaactatgtt gttagtgtat attgtaatca cctatttatg 001280
001281 tctgtttgac tgtgagcctc ttggagatgg gaattctctc ctatgcattg cggtttcccc agcccctagc acactgtcta 001360
001361 gcccagtatt ccttctcagt aagtaggtgt tgaatgaCTT ACAAAATGAA TGCTAAAAGA CCTGGTAGAC AAGAAGGAAT 001440
001441 TTCTTAGCCT AAATGACCAG ATGTGGAGAA GATACTCAAA CACTTCAGGG TCCCCAATCT GGTGATGTCA CTTGCAGTGG 001520
001521 AATTTCATAT GAATCCAGTG TGACAGAAGT TGCCTAGTCA AGTTGTAAGT CCTCTTCTCT gggtcacatg ttcaaatact 001600
001601 tttaggggac agataatgca atatttaaga tacaggaagt gatgaggact gtggcacact ggagagTTTG GACTCCAAGA 001680
001681 GTAATTAATT CAGTTGAAAA AATCAACAGC ACTCTGTTGA TCAAGCAAAC TTTCTAAGGG CCCTAATCCA CCTGGGCCTG 001760
001761 CAGTATGTAA TTCCATAACT CATGGGATGC CATCAAGAGA GACAATCTAC TTGATTGTTA AAGGGCCTTT GTTTTCTTTG 001840
001841 GAGTTCCCCA GGAAGGAGAA ATGTATGTGT GTGCAGGGGT GAGGAGGGGG GGAGAGTGAA GAAACAATAC TATCCCCTTA 001920
001921 AAAAGTTTTG TCAGTTTTCA TTATGAAAGA AGATCAAACG TGCCCACTCC AGAAATCTTG GCATATGCAG TTATTTTGAA 002000
002001 GCCATTCAGC GTTCTTCAAG ATGTCACAAT GAAAAGAGTG ATGatttttt aaataaaaaa ttaaCATGTT TCTCTTGGCA 002080
002081 A
[back to top]

Predicted Small Protein

Name NONHSAT006226_smProtein_773:871
Length 33
Molecular weight 3796.5004
Aromaticity 0.0625
Instability index 82.16875
Isoelectric point 8.25408935547
Runs 7
Runs residual 0.0271045918367
Runs probability 0.0340929164459
Amino acid sequence MFIELRVSQSRSMTLYNNKSNVLLEIIIKLEI
Secondary structure LEEEEEELLLLLEEEELLLHHHHHHHHHHHHL
PRMN -
PiMo -