NONHSAT006710
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006710 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2366 nt |
Genomic location |
chr1-:155201063..155203428 |
Exon number |
1 |
Exons |
155201063..155203428 |
Genome context |
|
Sequence |
000001 CAGTGCCCCA CAGCTCTTCA GGCCCTTCCT GTGCCTGGCT GCCCTCCCAC CCTACCCTTT TGTACCTCTG AGAAGGCTCT 000080
000081 GGCCCCACGC ACAGCCCCAC TGTCACCAGG GCCAGTATCT GTCTCAGGGA CCTCCTATCC AGAGCCTGAG CCAGCCCCAG 000160 000161 CCCCAGCCCC AGCTCCAGCT GCTCCATCTG AACCTGTATC TTCTTCCAAG CCACCCATTA CCCTCTTGGA GTCAGACTCA 000240 000241 CGCATCTCCA AAGAAGAACT TTTGAGAGCC CAGGCGCTGA GAGAGCAGGG TCAGACACTC CCGAGCCTCT CGGTACAGCT 000320 000321 GTAGGGGCGA CACAGGTAGG CTTGCAGCTG CGGGAACAGT GCCACCTCCG CACCTAAGCA CTCCCATTCC TGGCCAGCAT 000400 000401 CCTTGGGGCT CATCTCATAC AATAGCCCCC GGTCTCAGAG CTACCTCCTT CTCCAGCTCT TCCTCGTCCT CAGGCCTGTG 000480 000481 CTCCCCAGTC AGCAGCTGTA GCCGTTCCAT GTACTGCCGC TGCATGCGGC CAGGCAGGAA GAAGTTGAGG GGAAAGGGCA 000560 000561 TAGCCTCTGC ATACCACTTC CGGGTCACTT CTACGTAGTT CTTGGTGTCT ATCCAAAAAG TATGTACCTG GATTGGGTGG 000640 000641 GCAGGAAGAA ACAGGCAGGT CTGAGCCAGT GCACCTGTCT GATTCAAGGT GGGCTTCTGA CCTCCATGCT CTCCTGAGTC 000720 000721 TCTGTGTGGG TCTGTGTGTT CCCGTCCCCT CCCCGGCTGG CCATGGATGC TGGGAGGTCT GGGCACACTC ACCAGCACCG 000800 000801 GGATCAACTT CTCCTCCAGG AGAGACATGA AGGCCAGGGT GCCTGCCCCT TGCTGAGCTG ACAGATCATA ATCAGCATTG 000880 000881 TACTTCTGTG GAGGAAATAT CCATGGCGTG GACGCTGGGG AGCTGCAAGG GCACTTCACC AGGGAGGAAG GAGTCCTGTC 000960 000961 TGGTACCCCC CTCACTGGCC TCTGAGTGCA GTGGAGGTAC AGCAAGGAAC TTTTCCTGCC AAGGCCCCCT TGCCTGGGCC 001040 001041 CAGCCAGTAG CCTGTTGCTG TTGGCAAAAA GCCTGGGCCT TGGAGCCCGC TGGCCGTCAA GGTCCTGGGC CCATTGAGAA 001120 001121 GAAGGAAGAA AGGTTGGGCC GCAAACTAGG AGCAGCTCCC AGAATTTCCA TGGAAAGCTG GAACAATGCC TGCTGACAGC 001200 001201 AACTTTCTAA CAGTAACTTT CCCGACCCAG ACACCACAAA GCTAGCACAA CGGAGCTCAG ATGCAGGCTA GGACTCGGTC 001280 001281 CATGCCTCAG GAACCAGGGA AAGCCATCCT CACACTCCCT GGATCCAGGG AACCCACGCC CAGGGCCCCC CAGCTTGTTC 001360 001361 CCTCAGTGCC CAGCTCTTGG CTATTTCTTT CACTTCATTC CATCGCCCAG ACACCATTAC CACATACACA TTCCATCCAT 001440 001441 ACCCCCAGGT CTCAGCCTGC CCTACCTTCC CAGGCTCCAG TCCCTGTTCC TCAGCATCCC CCACCACATC CTGAGTAAGC 001520 001521 TTTGTCCCCA GATAACCTCT TCAGCATGAT CCTTAAATCT CCCTAAGCCT CAGTTTCTCC CCTGTGGAAT GGGGGTAAGA 001600 001601 ATCTCTTTCT CTGAATGCCC CTGTGTTAGG AAATAATTTA GAATACTTCG GAAACAAAAA GCTCTGTTCA CACCTAAGCA 001680 001681 ATCAGGGCAG TGGCCCTGGC CTTGCCAGGA ACTTAGGCTT TTATCTGGAT CCTCTTTCCA GGCCTCTCAA TTAATTCCCC 001760 001761 AGGTCCTTAA CCTTTGGGAA ATTAGAAATT AGGAAGAGTG TCCCACTTCT GACACTGTGT TCCCTCTTGG AACCTGACCG 001840 001841 TCAATGCTAG AAGAACCCTT GGAAAACATG CTGGCCCAGC CCTCTAGTTT TACAAATAAG GGAGTGCACA GCCCTGAGAG 001920 001921 GTTACATGGC CTGCCCAAGA TCACGCAGTC AATGGCAGAG TAAAGAGCAT AGCCTAGGCC TCCCCACTCC TCTAGTAATG 002000 002001 CTCTTTCATC TTCTCCAACC TGGCTCTAAG CCTTGTCCAT CCTGAGCCCC ATATCTAGCC CAACCTAGTC CCTGAAAACA 002080 002081 AGAAGTGGCC CTTAGAAATC TCTCTCCAGT CCCACTATCA GAGGCCAACT GCTGTCTTCC AGTCTCCTTC AGCCTGTGCT 002160 002161 CCTCTCCCTC CCTGACTGAC AGGCAGAAGG TACCGTGCCT CTGGATATCC CCACAGTGCC CTGAGCTGCA TCTCTTGCCG 002240 002241 ACTGCTTTAA TACATCACAG TGACATTGTG TGTGTCTCTG CCACCAGACT ATTGCTCCTT GATGCTCTGG GTCACCTGCA 002320 002321 TCTAGCATGG CATATATCTA GTGCTCAATA AATGTGTATT GTACGG |
Predicted Small Protein
Name | NONHSAT006710_smProtein_902:1195 |
Length | 98 |
Molecular weight | 10306.7681 |
Aromaticity | 0.0618556701031 |
Instability index | 67.2030927835 |
Isoelectric point | 8.90447998047 |
Runs | 11 |
Runs residual | 0.0181366933944 |
Runs probability | 0.0369915369916 |
Amino acid sequence | MAWTLGSCKGTSPGRKESCLVPPSLASECSGGTARNFSCQGPLAWAQPVACCCWQKAWAL EPAGRQGPGPIEKKEERLGRKLGAAPRISMESWNNAC |
Secondary structure | LLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLHHHHHHHHHHHHH LLLLLLLLLLLHHHHHHHHLLLLLLLLLLHHHHLLLL |
PRMN | - |
PiMo | - |