NONHSAT006985
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT006985 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1076 nt |
Genomic location |
chr1+:158423988..158425063 |
Exon number |
1 |
Exons |
158423988..158425063 |
Genome context |
|
Sequence |
000001 ATTTGGAGAC ATTTCTCTCT CCTCTGTGTA GTTGATAGTT TGCTGGTGAA GAGATGGCTG ACAGTGTCAA AACCTTTCTT 000080
000081 CAGGACCTTG CCAGAGGAAT CAAAGACTCC ACCTGGGCTG TTTGTACCAT CTCAAAGCTA GATGCTCAAA TCCAGGAAAA 000160 000161 GAGAGAGGAG CAGCCTTGAA GAAGGGCAAG TAGTGTCTTG GCCCAAAGAA GAGCCCAGCA TATAGAGTGG AGGCAAGAGA 000240 000241 GTGAGCCATG CGTTGTTAGT AGAATTTTCC AGCGTTGTGC TTGGAATGGT GGAGTGTTGT TGTTCAGTCT CCTTTTGTTT 000320 000321 TATCGAGTAT TTATTCCTGT GCTTCAGTCA GTAACAGCCC AAATTATTGG TGATCCATCA CTACATGGAG ATGTTTGGTA 000400 000401 GTGGCTGGAA TTCTTCCTCA GGTCAATTTT CAATGCTCTT TGGGTGCTCC CCTTGTTTGT GCTTAGCAAA GTAGTGAATG 000480 000481 CCATTTGGTT CCAGGATATA GCTGACCTGA CAATTGAGGT ATCAGGGAGG AAGCCTCACC CATTCCCTAG TGTCAGCAAA 000560 000561 ATAATTGCTG ACATGCTCTT CAACCTTTTG CTGCAGGCTC TTTTCCCCAT TCAGGGAATG TTTGTGATTC TCTTTCTCAT 000640 000641 CCATCTTGTA GGTCAGCTGG TTAGTCTCCT GCATATGTCC CTTCTCTAGT CACTGTACTG CTTTGAATAT CGTTGGTTCA 000720 000721 GTAAAGGAAC TGAAATACAC CAGCAGTTGT CTAACATAGA GAGCAATTGG CCTTACTACT TTGGGTTTGG TTTGCCCTTG 000800 000801 GCTTTTCTCA TAGCAATGCA GTCCTCATAT ACTATCAGCA GCTGCCTTTT CTCTATCCTC TTTCCTTTAT TCATTATCAG 000880 000881 CGCCAATGAA GCAAAGACCC CTGGAAAAGC GTATCTCTTC CAGTTGTGCC TGTTCTCCTT GGTGGTCTTC TTAAGCAACA 000960 000961 GACTCTTCCA CAAGACAGTC TACCTGCAGT CTGTCCTGAG CAGCTCCACT TCTGCAGAGA AGTTCCCTTC ACCTCATCCG 001040 001041 TCTCTTGCCA AACTGAAGGC TACTGCAGGC CACTGA |
Predicted Small Protein
Name | NONHSAT006985_smProtein_815:1075 |
Length | 87 |
Molecular weight | 9458.9714 |
Aromaticity | 0.127906976744 |
Instability index | 54.1441860465 |
Isoelectric point | 9.56707763672 |
Runs | 13 |
Runs residual | 0.0115411315515 |
Runs probability | 0.0387468916881 |
Amino acid sequence | MQSSYTISSCLFSILFPLFIISANEAKTPGKAYLFQLCLFSLVVFLSNRLFHKTVYLQSV LSSSTSAEKFPSPHPSLAKLKATAGH |
Secondary structure | LLLLHHHHHHHHHHHHHHHEEEHHHLLLLLHHHHHHHHHHHHHHHHHLHHHHLEEEEEEE ELLLLLLLLLLLLLHHHHHHHHHLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo oooooooooooooooooooooooooo |