NONHSAT007283
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT007283 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1864 nt |
Genomic location |
chr1+:164595273..164651720 |
Exon number |
5 |
Exons |
164595273..164595333,164610266..164611430,164611930..164612066,164643727..164644053,164651547..164651720 |
Genome context |
|
Sequence |
000001 AACCCCGTTA CCCCCCAGCC CACACACCAC CACCCCAGTT TTGGGTGGGG AGAAGGCAAA GGGAGAGATC ATCTCTCAAA 000080
000081 AAGCTCCCAT CAGAGCAACC ATTCTGGGAC TTTGAGCAGA ATGCTTAAGG CAGTGGTTCT AAAATTCCAC ACCACCTGTT 000160 000161 CTTCCAGTTG TGTCCTCTCT GAGCTGCCTC TGACGGTCAC ATTCCATGGC CATGTGCCAC AGCAGACTTG TGATACTGAT 000240 000241 TTTAGTGTTG TCCTTGGCCA TTGGGGGAAG GGAGGAAGGA GAGAGAAGAG AAGGGGAGAG AAGAAGAGAA ATGGGAGTGG 000320 000321 GGTCCATTCA TCCATCTCTC TTGTCATTAG GGGCCCAGCA GTTCCCACTA TGGTACCTAG GAAACTAGCT TGGACCTGGA 000400 000401 GGCCATCCAG TGACCTAGTC TGGGCCAGTA AAGCCACCAG GCCATTTTCC TGCTTCGGAC ATGCTTTCTC AGCTGCCCTC 000480 000481 CCCCTTAGCT AAGGCTGAAA TGACTCATCT TCCCGTGCCC TAGTTCCACG GGGTTTCATC TCTGTGACTC GGGACAGAGG 000560 000561 CCTTGGTTGC CACCAAAGGC AGCTTATGGT GTAGCTTCAG GTCTGGCCTG ACTCAGTGGC CTTCCCTCAG CTATTCACTA 000640 000641 CAGAGGCAGT TAATGAAGAA GACACAAGGG TAGCAGGCCT GAGGGATAAC TTCAAGGCTA ACGTGTCTTT TTTCCAGTAC 000720 000721 TTACTCTTCT TTTGAATTTT AAGAATTCCA GATTTTATTC TAAGTCAGAG AATACTGTGA GAAAGGATTT TATTGTATCC 000800 000801 ACTCTCTCCA AATGGTGTGA ACATCTGGAT TTGCATCCTT CCCATGACAG ATATCACAAA TTGGGTTGGG TTTTGCATGC 000880 000881 TGAGGATGAT TTTTGGTATT CAGCTAACAC CCTTCCTTTA AGGAAGTTAG AACACTTGAT AAATTTTAAG CTTTTGATCC 000960 000961 TCAGTAGTAC CCCTGGAAAA TTAAGGTCCA GTGAGGTAAA TTGTCTTGAT TAATTATATG ACATGCACTG CTTTTTGGTG 001040 001041 GCTCTTTTGT TGTGTTTTGT TTTTTCTTTC TCCTTCATTT TGTTAAAATG AATTATGTGA ATGTCCAGGT TAGCAGTGTT 001120 001121 CTATTTTCAT AGGATAAGCC CCATCTCTAG TACTGTTTAT TTCCATTGTG CCTATTTTTC AGGGAACTCT GTGCATTTCC 001200 001201 ACATTTCCAT CACCAGCTCT AAGAAGAAAA TAGAAAATGA GATATTAGAA GGAAATAGAA CAAAAACTAT TTGCCTTCAA 001280 001281 GGAGCTCACA GTCTAGTTCT GGAGACTGGA CATAAGCAGT CTCTGCTCTC TGCTTGGACT GGTGTCACTG TGATCATTCT 001360 001361 AAGTTACAGA GACAGTTGAC GGCTTTGGAG TGAAAGCTAG GAGCCAAGGA GTCCTGAGAA AACTATAAAT GGGCATGGAA 001440 001441 TGTCCTGGAT AATTCTGTGG TGGGGAAATT AATTCTGAAC CACTAAGTAC TATTAAGAAG CTGATGCCAA CTAAATAGGC 001520 001521 AGAAATTTTT ACAAAAGCTG CCAGAGTTTA GAAACCACCC AGTGTGCCAT AGCTTCAGGG GAGCAAAACT ACCCACTCTA 001600 001601 CCAAGTTGGA AAAAATGAAG AATGCTTCAA ACTGAATCCA GCTGATCCTG GAGGCCACTG ACCCTGTCCT AATGGAGACA 001680 001681 AAAAGTGACA GTATTTCGAA AAAAGCCTGG TTTTGGTACA GCTCTTCCAG AACCCACGGG AAGAACCTGT TCATCAGCTC 001760 001761 ATCCATCCGT CTGCTGAGTA AATGCTTATT GAGCATCTAC TGAATGCCAG CACTGTTCTT TGTTCTTGGA ATACATCAGT 001840 001841 AAACAAAATA AGGAAAACAA AACC |
Predicted Small Protein
Name | NONHSAT007283_smProtein_1100:1378 |
Length | 93 |
Molecular weight | 10360.7765 |
Aromaticity | 0.108695652174 |
Instability index | 49.9490217391 |
Isoelectric point | 9.34259033203 |
Runs | 17 |
Runs residual | 0.0495777291211 |
Runs probability | 0.0456425283415 |
Amino acid sequence | MSRLAVFYFHRISPISSTVYFHCAYFSGNSVHFHISITSSKKKIENEILEGNRTKTICLQ GAHSLVLETGHKQSLLSAWTGVTVIILSYRDS |
Secondary structure | LLEEEEEEEEEELLLEEEEEEEEEEELLLEEEEEEEEELLLLLLHHHHHLLLLEEEEEEL LLLEEEELLLLHHHHHHHHLLLEEEEEEEELL |
PRMN | - |
PiMo | - |