NONHSAT007392

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007392

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4577 nt

Genomic location

chr1+:167391147..167395671

Exon number

1

Exons

167391147..167395671

Genome context

Sequence
000001 GGTTGGGTGG GGGAAGAGGA GATGTTGATT ATGTTAGAAG GAAAACATTG CTCGTGTGTG TGTTTGTTTT TTCTTATATC 000080
000081 TGTCTTGCCA AAGGAAACTT GATTTTCCCT GTGATTGGCT TTGGCCTCTG TGGTCTGGTC TGCAGCAGTG TGTGGTGGCA 000160
000161 TGCAGGTAAC ATATGGGGTG TCCAGTAGGT TCAGGGACCC TGAGGGTGCA TTTACATCCC TTCCTATGGT TGCCCATGCC 000240
000241 CCCCAGACCC TGCCAACCTC TCCTAATGAT TCATTACCTC TGTACATAGC AAAAGCATAG GCAAAGGATG AATGCGTGAA 000320
000321 TGCCTGGATG TGCAGTTGAG AAACAGAGGC AAACATAGAC ATGCACCAAT TAATTTGGAG CCAAGAGGTG AGTGATTGAT 000400
000401 GTATCTTAAA TCTAGGAAAG TTAAAGTGAA ACAGGTTCTT TGTGTTGCCC TCTGTCAAGT TACTGAATGT TGTGCTAATA 000480
000481 ACACAACACT TTAAAACCTT ACTTACTTTT CTCATACCAA GGCTAGTTCT TTCTAGACCA AAAACACAAA CAGGATAAAA 000560
000561 AGCAAACCAA GAAGTTGAAA GCTAACCTGC CCACCTCACC CCTGTGATAC AAAGTGTGAA CCTTAAGGAT TAGTTGGTGG 000640
000641 GATTGAGGAG AGAATTATTC TTGGTGGGAA CATGAATGAG AAATGATGCT GGCTTAGGAA AAATCACAAG CCCTTTCTGC 000720
000721 CCATACTCTG GGACAAACTT TCTTGGCTCC CTGAGTTTGG ATATAGACTG TATCTCTAGA AAGGCTATTT TTTTAAATAA 000800
000801 ATGATCCCAC AGAACTTAAG TGGGATTTGG TTTAGATACC AAAGACACTG CTAATGTCAT TGCTTATCCT TAAGTTTTCA 000880
000881 AAACAGGCAG AGGGAATAGG AGCAAAAAGC CAAAATTTGG AAAAGCTTTA CTTTATCTCT TTCCTTCCCT TTTCCCCTTT 000960
000961 TCCCAGTCCC CTGCTTTTTG AAGGAAGTCT TCTTGGTTAT CCTGGCTTTG GAAAAGAGAT TTATTTTGTT TTGCTCTGCT 001040
001041 GGCTCTTTAA AGATGGATAG TTGCTCAATG TAGCAGTGAT GTTCTTGGAA TTGCTGAGAA ATTTGGGGAG GGCAAAAGAT 001120
001121 AGGGGTAGAA TTTTTTCATT ATTTCCCCTT ATCTAATACT TTTAAATAGA ACCAACACAG CCTATATGAG TTCAGGCAAT 001200
001201 ATTTAGATGT GGTATCTCCA TCTGTCTCCT GTAAAAGATA AGAATTTTCA AGAACAGGAT TACGTGGAAA ACCAAAAGAT 001280
001281 CTTCCCTTAC TCTCCTATAA ATGTTTTGTT CCAAATGTTT TTATATATGG GCTCTAGGGA GTCAGGTAGT TCATTGTTTC 001360
001361 GGTGTACTAT TGATAGGACA CAGAAAGGGA GAGAGGGTAA AGAAATGTAT CGCTCTCTGA ATATTGCATC AAAAATGATT 001440
001441 AGGTTGCAGA ACTTCATGAA AGCTTTACTA ATAATCTTAT TGTTCTGACA TTATGTAAAG GTGGTATTAA TATTGTATGA 001520
001521 CTTGTCAAAG TGCTAGATAG GTTTATAAGT AGGTAGTAGG GATGTTGAAG ATTAGAGCAC TTGAAACAGA AGTTCTGGGA 001600
001601 AAACAAGGTG TGTGTAATGG AACACCACTT TGAGCACAGA AACAAAGGTC CCTTGGACCT GGTAGGGAAG ATGTGATTTA 001680
001681 TGATTGTTTC TGTGTCCCTG TATCTGCCCA CCCTGCACAG GGCTCCACCA CCCAGGGCCA CCTTCTGGTT TAAACCCAGG 001760
001761 ACACTGTCAA AAAGTTAAGA CCCCAAAACT AATTTACTGT AAAAAACATT GAGGACTGCT GCAAAGTTTT CCCTTGTTTT 001840
001841 CTTTGTGTAC TTGTTCATCA TTGTATAAGT TAGCCACAGC TTCACAAGAG CAGCTTAAGG CTTCTTTCAT AAATTGGCAG 001920
001921 TGGCATTGAG TTCTCAAACA TTATATCCCA AAGTCTGCAG GCAGACAGCT GGATACAGCG CTGTGTATAA ATGAGACGTC 002000
002001 CAAACACTTG AGTTTCTTAA GATTGGGATC TCTTTCAAAT GAAAAAGGAC AGAGCCAAGT AGAGAAAAGA CTTTGTGCTC 002080
002081 CCACCCAGCC TTAATGAGTC TCATGGTCTA AAAGTATAGG AAGAAATGAA ATGCACTTTC AGAAGCTAAA ATGACAGTGT 002160
002161 CTGCTACAAA AGGCTGTAGT TGTAGGCAGT CGGGGATGCC ATGTCCTTGG TTCCATTCCT GCGTGAGTCT GCAGAAGGCA 002240
002241 CACACTTTGT AAGAGTAGAG TGGACTAGTG CCAGCCTGAA TAGGTTTAAA ACTGCAAACA GTTGGAGAAC ATGGAACAGG 002320
002321 TTGGTGCAGG AAGCCTAAGA TTTTGCAATC ATATTATAAC ATTGGCTTTT GACAACATAA ATGTTGTATC TTCCCTAAGG 002400
002401 TCAGGTCGGG GAAAGAAAGA CTTCCAGCTT CTTACCTCTG CGTGCATGGG CACGTGTGCA TTGCTCAGTC CGCAGGAGGT 002480
002481 CTCACTCCAC AGGAAACGCT CTCCTCCCGC ATAAGTCTGT ACTTCCATCC CCTCATCTGT GGTAGTAGTG AAGGCTAGGT 002560
002561 GAGTAAGCGT GGGCTGTTCT ACCCACCAGA AGTCCAGGAG CTGTTGTATA CCTCATTTCT AACTCGTGAC CGAGTGACTT 002640
002641 GCTTTAACTT TCTCGAAATC CTACAGAGTT GCCAAGTCTG CCCTCCCTCC TCAGTCATGT TAAACTCTGG CCTATAGCAT 002720
002721 CATGGGACCT GTAGCCTAGG GTGGGACCCC CTAAAGCCTC TGAATGTCGC TGCTTAAAAG CTACTGCAAA CTGAGGGCAA 002800
002801 ATTGCAATCT TCTATTCCTT TTTGTTGCAA GGGGTCTTCA CAGGTCTCTT AACATCTGCT TTCCCTGCCA CCCTGCCTTT 002880
002881 AGGGGCTGGC CAGCTATCCA CACCCCTAAC CCACCCTGTG TTTCTGACAG CTGGCCACAC GTCAACTTCT GTACTTGCCT 002960
002961 TTTCCTTGGT GGGGTAGAGG CCAACCCCTT CTCCTCTGAG GCCTCAGGGT TCTGTTTCTT TTCAGGACTT TGGGTAGAAG 003040
003041 GGAAGACACC AAAGGCTCCT TTAAGCTGAC TGCTGCATAC ACATTTCACT TTTTTTCCTT TGACATGACC AAAAATATCC 003120
003121 AAATATTTAA GTTTATTACT ATTATTATTA TTATTATTTG ACAATCTTAT ATCCAATGGG CTCTCTAGAA GCTGCATCCC 003200
003201 CAGCCCTTTC ACCTTTTCTT TGAATGTAGT TCCCAACCTT CAATTCCCAC CCCTAATGCT GACAAAAAGC TTAGCCAGGT 003280
003281 CATGATACTG CTGCTATAAG CCAGGGGAGG GTGGTTTCTT TGTTTTGTTT TGTTTTGTTT TGTTTTTTAA ATTTCCAGCC 003360
003361 AAAACCAAAG ATTTCTTAAT GATTGTATAA ACTCAAAACA AACAAAAGAA CCAAAGAAAA GGGAAGTCTT CAGCATCAGT 003440
003441 CCAGTCTGTG GTGTCCTGGC ACTTAGAAGA GTGAGGCCAG GGAAGGTGGG GCGGGGGGAC CCTCTGACTG GATCAGAAAG 003520
003521 GGCAGGCAAG CTGCTTACCA CCTTCCAGGG TCCAGCACAG GTGCATGCCC CTAGCTTTGG CCCTCACAAA CTTGTGAGCA 003600
003601 TGCCCTGAAA CAAATTGGCA TTTCAGATTT TCCAAAACAA AAGTCAAAAA ACCCCATCAC CACCATCATC CACCCTACAC 003680
003681 CAACCAGGGT CACTATGGGG ACTTAGCACA GGGCCTAGGG AGGGTGGGAG CTGCTGCTGG ACTGGCCCGA GGACTCCACA 003760
003761 GAGTGGGGGA CGTTGAAGAC ACTGGCGCAC GATTGGCTGC TCTGCTGGGT GCTTTAACCT CTGGGGCTGG GCGAATGCAC 003840
003841 GCCACGGTGC CCTTCTGAGC CTTTTTTTCT TTTCCTGTAC TGGAACTGCT TGGAAGTGGC TGTCCTGTTT GTGAGAAAAC 003920
003921 ATGCAGAAAG ATTATCAAGC TTTTCATTTC TCTTTATTGT AGTTTTCTTT CCTTTTTGCA GCACCACTGT GCAACTATGC 004000
004001 ATTGTACTTC ACAACCTTTT GTGCTAGGTA GATGCCTGTG ACTTTTTAAC TTGGGGGGTG GGGGGATTGC AAATGAAGGA 004080
004081 ACTTTTTACA TGGATCTTTT TAATCTCAGT TGGTTGGGGG AGGGGGGTAC TTGGTTCTTG GGTCACACAA GCTCTATCCC 004160
004161 AAAGCAAAAT CCAAATGTTA ATAATATTAG CCTGATGCAG ATACCAAAGA TAATTTCTTT CCTGCAGAAC CTTAGACTCG 004240
004241 TGTATTAAGT ACGATTACCC AGCACTTGCA TTAGTCTAAC CTCAGTAATT CCAAAGCTTA GATGTATATT TTGGTATATT 004320
004321 TCTGGGATAT TAAAAAAAAT GTCGTTTAAC TTCTTGTTTG TTTCAGTGTA ATGCTCTTAA AGTCATAGCA TGAAAATAAT 004400
004401 TGAACTGTCC TATTCTTAGT AGTTTGAAAT AATAGTATTT TTGTATGTTT TGGGTGTGTC TATGTATGTA TTAACATAAC 004480
004481 AGTTTTCACT GCCTAGGTGT TCATAATAAA AAAGAAAATG AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 004560
004561 AGAAAAAAAA AAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT007392_smProtein_2150:2251
Length 34
Molecular weight 3583.1941
Aromaticity 0.0606060606061
Instability index 63.8909090909
Isoelectric point 8.93634033203
Runs 6
Runs residual 0.00230566534914
Runs probability 0.0137784843667
Amino acid sequence MTVSATKGCSCRQSGMPCPWFHSCVSLQKAHTL
Secondary structure LEEEELLLLLLLLLLLLLLLLEEEEHHHHLLLL
PRMN -
PiMo -