NONHSAT007533
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007533 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3771 nt |
Genomic location |
chr1+:171478699..171484935 |
Exon number |
3 |
Exons |
171478699..171482311,171483675..171483769,171484873..171484935 |
Genome context |
|
Sequence |
000001 ttttttttaa aaaagagttg atgcccagtt tcccccctgc ccccagattt gtatacagca agAGTTGAGA ATCACTGCTT 000080
000081 AGAATATATC TGCTTATAAT AAGTCGGTAG GTCTTAACAT TTTTGTAAGT CTTAGTCAat ctggaagact tgctatagag 000160 000161 tgctgggccc cttcctcaga gtttgattca gtaggtctgg gttgggacct gagaattttc atttttaTCC TATTTCTAGA 000240 000241 GAAACATGGT TTCTCTAGAA TCACATGTCT CAGAAACATT Gtttcttttt tttttttttt tttttttttt gagacggagt 000320 000321 cttggtctgt cacccaggct gtagtacagt ggcatgatct cggctcactg caacctccac cttccgggtt caagtgattc 000400 000401 tcctgcctca gcctcccgag tagctgggat tacaggtgcc tgccaccatg cctggctaat ttttgtattt ttagtagaga 000480 000481 cggggtttca ccatgttggc caggctggtc ttgaactcct gacctcaggt gatcgcctgc ctcagtctcc caaagtgctg 000560 000561 ggattacagg tgtgagccat cgtgcccggc cAGAAACATG GTTCTGCGAA ccgcagtagc agtaggtgta ggaaggaaag 000640 000641 tttggatgtt agatacaggt tggtttggag atttgctcct aggaagttta aggagttctt ttctcatgat gttgctttct 000720 000721 ctctaatata cagaaagggt cttcaccaag agtgCTGCTT GAGTAATAAT GGTGTTCAGA AAAGTCCAAG ATTTCAGGAT 000800 000801 TCTTAGTTAA ATAACTTAAG CAAGTTGACT GTTTTTCTTG ATACATCAGT TCCTTTTTTT TTCACCTGAT GAAAAAGCTC 000880 000881 tttgaatttt aattttgtca ggtagtgaat atttactgtc ctcttttgtc actgtagatg aatattcttt ctatatcttt 000960 000961 gtacatgtta ctggtaaatt tgccaatagg atagATTTTG GTAGTACATT CTCTTTTCAC AACATCATCA TCATTAGCGG 001040 001041 TCTTGGGGTA AAATTAATTG TATACATTCT TCTACATATA GTAGCAAATT GTATTAGTGT AGTCCTATTG GTTGTAGGTC 001120 001121 AGTCTTTTTT CAGGTTGTCG GTTGTCTCAA GGAAAGATGG TTTATTGTAA ACGTATACGT GAAAAGCGAA ATGGTTATCT 001200 001201 ACACTGTTAT GTGGGAGGAG GCAGCATAGT GTAATGGATT GAACCCGACA CCCTAGTTTC AAATTCAAtc tgatttagtc 001280 001281 tttatgtgta aaaatcaaga cagtaactac attgtaaagt tgtttgactg aaatgagata atagaggtga gaatgcctga 001360 001361 taaattttat ggaactatac aaacgttggg tggcattTTA CATGCATATA AAATGACATC TCTGCTGATT CTGTAATTGA 001440 001441 CAAATATAAA ACTAACGGAT GAAACGAAAT TTATAAAAGT AAAGTGGATA TAGGCTTTAC TTTGATGCTT TTTGCTTGGT 001520 001521 ATACCTATTC TATACTATCT TTGGCTCCTG TGTTTCAGTT CTCAATGTTT TCAGCTATTG ATCGTTTCTA TGGTAGAATT 001600 001601 AGCCATCTTC TACCCTACTG CTACAATAAC CCCTcaaaaa caaaaacaaa aacaaCCGTT AGGTTGATAT GTATCTACAA 001680 001681 CTTAATTAAA TTGAAGGGAA ATAGCATGAG ACATAATTTT TCTTTTTTGC CTATCTATTA ATAGACTAAG TTAGGGTGCA 001760 001761 TCACCAAGAT GAGGGTACAT TAGCTCTAAA GATGAGGATT CTCTTTGTAT TTGAATGCTT ATGAAAATGT TATTTATTTC 001840 001841 TAACAACTTC TCATATGTAA GGGAACTTTA TATATGCTTT GAAAAAAATG GATACTATTT TTTGAATATT TAGTCCTCAG 001920 001921 TGATGAAATA GGTTATTTTT ATATACCTTG TGTTTGTGAG ATGTTTTACC TTTTACGAAA TGAAGAGAAC ATAGAACGTT 002000 002001 GTTTCTGTTC TAAACTGTTA AAGTTAATAG AGCTTTGTTG GGCACATACT GCCTGATGAT GATACAGGGA TGTAATATGT 002080 002081 AGGGGAATGA AGATGTTGTC CTGTCATTTG GATTCCATGT GCATAGGTTG ATGTGTCAGT CATTTCAAGC ATATTAAATT 002160 002161 GGATAATATA TCTTTTTAAA ATAGACAGTC TCAGTGGGTT CACTGTGTTT TAACTATTCA CGACAGCATG GAATTATAAC 002240 002241 CCTTATTCTC TATGATAGAG TTAAGCAGTT ATAACCATAT ATAACTGATA TGTTTCACAA GTGCATGATA GCTTATTGTG 002320 002321 ATCAATTTTG TTGTGTATTG GTTATTGGAA TTTGACAGTT AAAAAGTTCT ATGAAATTAT CATTGATATG GGAAGTTTTT 002400 002401 TCAGAATTTC TGTGAACATT TGAATTTACT GAGTTTTTCA TCCTTATTTT TCTTTCTTAT GTACATCTTA AGGACTGGGG 002480 002481 TTTTAAGGGG TGTGGCAGGA GGTTTTGGAC TCGATGAGTT TCCACCGAAA TGTCGGAGAA GTCAGGCCAG AGCACAAAAG 002560 002561 CAAAGGATGG GAAAAAGTAT GCAACACTCA GTTTATTTAA TACTTACAAG GGGAAATCAT TAGAAACACA GAAAACCACA 002640 002641 GGTGAGTAAA ATCAAGTGAC ACTTATGTTT TTCATGGTTT GTTTTGTTAC TATAAGTGAT ACACCTGCTG CTATGAGAAG 002720 002721 CTAGGATGTA CCCAAGTTAA TACAATGCTA TTTACATTTG CGTTTTTATG CATGCACACA TTTTTCAGAG GATATGTGAT 002800 002801 AAACATCTTA TAATTGAAAA TTTATACTTT CATAGAGCCC TTTAAAAATA TTTTTGTTTT TCTCTGTTGT CAGCAGAAAA 002880 002881 AAGGTAGAAC TGTGTGGCTC TAAAGGGGAA ACTCAGTCAA TGAGATTGAT AGGCACAGAC CTATATATTA GTGGGAATTT 002960 002961 AGTATCTTTT TAATTATAGA CTAGAGAAAG TCTTATGTTT Cgtgtgtggg ggtgtgtgtg tgtgtgtgtT AGATACTGTG 003040 003041 ACCTAGTGAA TATAGTGAAA ACTGAAAATC ATGCATGGCA TATTAACAGT ATTCTTTATG AACATACAGT CAATACATTT 003120 003121 ATTCTCTAAC ATTCTAAGTT TTGAGTTTGA AATAGATTCT CTGAAAAAAT ATCAGTATTA TCAATGTTTT CTGTAGTGTG 003200 003201 TTGAATTGCA TTGTTAAATT TTTTAAGGAA TCTGTTAAAT GCTGTTAAAT GGCTTGATTT CTACACTGAA ATGTGTTGCA 003280 003281 GGTGTGTAGC TTAGttttaa aattattatt ttaaaataCA TGAATGAAAA TCATTCAGGG ATTGCATTAA TTCCTATTGT 003360 003361 TTTTCTATAT TGTTTGAGGA ATAAAATGGG TAATAAAATA GATGTTCTAA GAAAGTTGAT GTTATTGATC TTTAGTTGCA 003440 003441 GCTCGACATG GATTACAGAG TCTTGGAAAA GTCGGTATTT CACGGCGTAT GCCTCCACCT GCTAACCTCC CAAGTCTTAA 003520 003521 AGCAGAAAAC AAAGGCAATG ATCCTAATGT AAACATTGTA CCTAAAGATG GCACAGGGTG GGCATCAAAA CAAGAGCAAC 003600 003601 ATGAAGAAGA AAAAACACCA GAAGTGCCAC CAGCACAGCC AAAACCTGGG GTTGCAGCTC CCCCAGAAGT AGCACCTGCT 003680 003681 CCCAAATCAT GGGCCAGTAA CAAGCAAGGA ATCCAAGTGA ATAGTCAGTT TCAGCAAGAA TTTCCCAGCC TGCAGGCAGC 003760 003761 TGGGGATCAG G |
Predicted Small Protein
Name | NONHSAT007533_smProtein_353:574 |
Length | 74 |
Molecular weight | 7641.6823 |
Aromaticity | 0.0547945205479 |
Instability index | 52.8232876712 |
Isoelectric point | 6.55926513672 |
Runs | 15 |
Runs residual | 0.0613345117101 |
Runs probability | 0.0327680621799 |
Amino acid sequence | MISAHCNLHLPGSSDSPASASRVAGITGACHHAWLIFVFLVETGFHHVGQAGLELLTSGD RLPQSPKVLGLQV |
Secondary structure | LEELLLLLLLLLLLLLLLHHHHHHHHLHHHHHHEEEEEEEELLLLEEELHHHHEEELLLL LLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii iiiiiiiiiiiii |