NONHSAT007785
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT007785 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2352 nt |
Genomic location |
chr1+:176812380..176814731 |
Exon number |
1 |
Exons |
176812380..176814731 |
Genome context |
|
Sequence |
000001 TTATGACCTG GGAGCTGGGC CCATTTTATG ACCAAGGAGA TGGGGAGTTG GAATGGTGGT ACTAAGAGGC ATAGGAAGTT 000080
000081 GAGTGTGAAT ACCATTGGTG ATGGGTCCAG GAGAACTAGA CTATGGTTCT TGAATATCTG TCCACAAAGA ATATACTAAC 000160 000161 TTTTGTCAAC TTCTCAGAAC TCCCAACTGG AGTCGGTGAG ACCTAGGATT TTCTGCACTT CCACACATGC CTGTTCCAAG 000240 000241 TGTGGCTGTC AGCCAGTCAA CAAGTTTGTA CTATGGCCCA TTCTCTGATC ACCAGGATTA CAGGAACTCA CACACTCCTC 000320 000321 ATACTTGGCC TGTAGTCCTA CTTCTTGTTA GAAGTCTCCA AGTCTGGCCA GTCACATGAC CAAGTGTTGA TTTTTCTGGA 000400 000401 GGAAAAATTT TATGGAAATG ATATAGGGGA AAGGTGGGAG GAGATGAAAG AACAGGCAAG AGCTGTCAGG GTTAAATCCA 000480 000481 GGCCCGGGCA TGAGAATGGA AGTGATCAGG GAGACTCGGT CCTTGTTCCA AGTCTCCAAA GAAGACCAAA GTGGGTCCCT 000560 000561 TGAGCAATGA AGAATCTGAG ATAAATTCTC TTCAAGTATC ATGTACAAAA TCTGTGAGCC AGAGATTTTG ACTTGAGCAA 000640 000641 GCCATGGAAA TGCATGGAGC AAGGGTGACA CTCTGTGGGG AGACAGAAGA ATTTCAACTA TTTAATGTCC ATTTTGTTGT 000720 000721 TTTTACCCTT TCTTATCCAA TAGATGGAAT GCACATGAAA TGACCATATT AAGCCTCTCT CTATTTACAT CCCAGGCTCA 000800 000801 CTGGGATGTG ATCTACTGCA GTTACATTTT CTTGTAACGG TTTCTGGATT AGACCCTAGG GAAAGTGAGT AAGGAGCCAG 000880 000881 TTTCTGTTTA ACATTCTAGT TTTACTCATT TTAGGAAGGC TGTGAGTGAG GCTTGTCTCC TTTAAAGTTT CTTCTCCAAT 000960 000961 GGAAACCAAG AACAGACAAA ATTTAGAGCT CAGCTGTGGT CTCTTCTCAT CTTCTGCTCT TTTGCTTTGA CCACAGTTTT 001040 001041 TCTACTCTTC CCATCAACAC TAGAGCAATG GCTGTGCAAA TAGGAATAGG AAATACTACC ACAATGATAG AAATATTATC 001120 001121 CACACTATCA CGTAGGGAAG AACAATATCC TGAAAGAGAA TAAAACACGA ATAAGGTGAT GTACCCACAT TAATCTGTGG 001200 001201 GTTTGTGGAA TGAGGGTTGC AAAGTTATTG GGAAAAGGAA AGAGCAGAGT TCACCCATTC AAAAAAAACC TTTTGTCTAC 001280 001281 TAATCTCTAG TGTAAAGAAA ATGTAGTTCA GATACCATTC ATTGTCTTGG GTCATGCTTA GTGCCCCCAA GAAGACAAAC 001360 001361 ATATTTATTC TTGGGATTCT GATAGGCTTC AATATGCAAA GGACAATGGA AAAGTTTAGA CACTCTATTT TCAAAATTTT 001440 001441 ATAAACTTGT TTTATTGGGG AAAATGTCCA AATTGCTAGA CACATTCTAA GTTCTGCCTT GGAGAATCCT ACTTTGTCTG 001520 001521 AGATTGAGGC AGAGGAATTG TTATCCTGGG CATTACTCAG CTCAGGAACA TGGAGCCTGT GGTTCATGCC AGTGTGTGTC 001600 001601 TTCATGCAGT CTCTCCACAA GAGCAACAGT AAGAACATTT CTGTTTTAAA TTTCATTTTA AAATATTTTA TTATCTGCAA 001680 001681 TTCACCACTG CTCTGGGAAA GCAAAAGGAA AGTTCCTGTT GTGTGTGAAG AGCCTCTTAG GCTATAAGGC TTCCCAGCCA 001760 001761 TAGTCAGCTA TAGCTATTCA GAGACAGCAG GTTCTTCCAG TCTTTGTTCC TGGGACCTGA TGTTTTGAGC AACTCAGGTC 001840 001841 ACTGATAAAG TGGAAGGACT AAGACACTGT GGTCACAGAT CCCAGCAACA TCAACTCACA CTCAATCCAT GTGGTGGTCC 001920 001921 ACATTCTGCT ACTCTTATCC ACCCATGTGG TCATTGAGAG CCTTTCTCAG AGACTCTTCT GTGTGTTTGA TTGTGCCCAG 002000 002001 GTGGCCCAGG GCTAGCTGGC TCTAACAACT AGCATGACAG CCTCCAATCA GAAAGGCAGG TAAGGGGACA GGGTGAGGAG 002080 002081 AATGGGCAGA TACTGACAGA AATTAAAGTA AAGGGATTGT GAAAGTAAAG AGCTCTTCCT GATTCTCATC TTCTCTTTTT 002160 002161 TCTATTACAA GGCATTGAAC TTGGCACTTC CTGTATTCTT TGTGATCACT ATTGAGTGCA TTAGTTAACA CCCAAGGGGA 002240 002241 TGGCTTGATT GGGAATGTAG TGAAAGGAGC TGATCTACTG TATTGTAATG TAAAACAGCT ACAGCCAGTT ATTTTGTAAG 002320 002321 ATTATAAGTT GTTCATTAAA AAATCAGCAC AC |
Predicted Small Protein
Name | NONHSAT007785_smProtein_443:562 |
Length | 40 |
Molecular weight | 4396.9488 |
Aromaticity | 0.025641025641 |
Instability index | 65.5282051282 |
Isoelectric point | 10.8779907227 |
Runs | 6 |
Runs residual | 0.0148944193062 |
Runs probability | 0.0470764882531 |
Amino acid sequence | MKEQARAVRVKSRPGHENGSDQGDSVLVPSLQRRPKWVP |
Secondary structure | LLHHHEEEEELLLLLLLLLLLLLLEEEELLLLLLLLLLL |
PRMN | - |
PiMo | - |