NONHSAT007785

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007785

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2352 nt

Genomic location

chr1+:176812380..176814731

Exon number

1

Exons

176812380..176814731

Genome context

Sequence
000001 TTATGACCTG GGAGCTGGGC CCATTTTATG ACCAAGGAGA TGGGGAGTTG GAATGGTGGT ACTAAGAGGC ATAGGAAGTT 000080
000081 GAGTGTGAAT ACCATTGGTG ATGGGTCCAG GAGAACTAGA CTATGGTTCT TGAATATCTG TCCACAAAGA ATATACTAAC 000160
000161 TTTTGTCAAC TTCTCAGAAC TCCCAACTGG AGTCGGTGAG ACCTAGGATT TTCTGCACTT CCACACATGC CTGTTCCAAG 000240
000241 TGTGGCTGTC AGCCAGTCAA CAAGTTTGTA CTATGGCCCA TTCTCTGATC ACCAGGATTA CAGGAACTCA CACACTCCTC 000320
000321 ATACTTGGCC TGTAGTCCTA CTTCTTGTTA GAAGTCTCCA AGTCTGGCCA GTCACATGAC CAAGTGTTGA TTTTTCTGGA 000400
000401 GGAAAAATTT TATGGAAATG ATATAGGGGA AAGGTGGGAG GAGATGAAAG AACAGGCAAG AGCTGTCAGG GTTAAATCCA 000480
000481 GGCCCGGGCA TGAGAATGGA AGTGATCAGG GAGACTCGGT CCTTGTTCCA AGTCTCCAAA GAAGACCAAA GTGGGTCCCT 000560
000561 TGAGCAATGA AGAATCTGAG ATAAATTCTC TTCAAGTATC ATGTACAAAA TCTGTGAGCC AGAGATTTTG ACTTGAGCAA 000640
000641 GCCATGGAAA TGCATGGAGC AAGGGTGACA CTCTGTGGGG AGACAGAAGA ATTTCAACTA TTTAATGTCC ATTTTGTTGT 000720
000721 TTTTACCCTT TCTTATCCAA TAGATGGAAT GCACATGAAA TGACCATATT AAGCCTCTCT CTATTTACAT CCCAGGCTCA 000800
000801 CTGGGATGTG ATCTACTGCA GTTACATTTT CTTGTAACGG TTTCTGGATT AGACCCTAGG GAAAGTGAGT AAGGAGCCAG 000880
000881 TTTCTGTTTA ACATTCTAGT TTTACTCATT TTAGGAAGGC TGTGAGTGAG GCTTGTCTCC TTTAAAGTTT CTTCTCCAAT 000960
000961 GGAAACCAAG AACAGACAAA ATTTAGAGCT CAGCTGTGGT CTCTTCTCAT CTTCTGCTCT TTTGCTTTGA CCACAGTTTT 001040
001041 TCTACTCTTC CCATCAACAC TAGAGCAATG GCTGTGCAAA TAGGAATAGG AAATACTACC ACAATGATAG AAATATTATC 001120
001121 CACACTATCA CGTAGGGAAG AACAATATCC TGAAAGAGAA TAAAACACGA ATAAGGTGAT GTACCCACAT TAATCTGTGG 001200
001201 GTTTGTGGAA TGAGGGTTGC AAAGTTATTG GGAAAAGGAA AGAGCAGAGT TCACCCATTC AAAAAAAACC TTTTGTCTAC 001280
001281 TAATCTCTAG TGTAAAGAAA ATGTAGTTCA GATACCATTC ATTGTCTTGG GTCATGCTTA GTGCCCCCAA GAAGACAAAC 001360
001361 ATATTTATTC TTGGGATTCT GATAGGCTTC AATATGCAAA GGACAATGGA AAAGTTTAGA CACTCTATTT TCAAAATTTT 001440
001441 ATAAACTTGT TTTATTGGGG AAAATGTCCA AATTGCTAGA CACATTCTAA GTTCTGCCTT GGAGAATCCT ACTTTGTCTG 001520
001521 AGATTGAGGC AGAGGAATTG TTATCCTGGG CATTACTCAG CTCAGGAACA TGGAGCCTGT GGTTCATGCC AGTGTGTGTC 001600
001601 TTCATGCAGT CTCTCCACAA GAGCAACAGT AAGAACATTT CTGTTTTAAA TTTCATTTTA AAATATTTTA TTATCTGCAA 001680
001681 TTCACCACTG CTCTGGGAAA GCAAAAGGAA AGTTCCTGTT GTGTGTGAAG AGCCTCTTAG GCTATAAGGC TTCCCAGCCA 001760
001761 TAGTCAGCTA TAGCTATTCA GAGACAGCAG GTTCTTCCAG TCTTTGTTCC TGGGACCTGA TGTTTTGAGC AACTCAGGTC 001840
001841 ACTGATAAAG TGGAAGGACT AAGACACTGT GGTCACAGAT CCCAGCAACA TCAACTCACA CTCAATCCAT GTGGTGGTCC 001920
001921 ACATTCTGCT ACTCTTATCC ACCCATGTGG TCATTGAGAG CCTTTCTCAG AGACTCTTCT GTGTGTTTGA TTGTGCCCAG 002000
002001 GTGGCCCAGG GCTAGCTGGC TCTAACAACT AGCATGACAG CCTCCAATCA GAAAGGCAGG TAAGGGGACA GGGTGAGGAG 002080
002081 AATGGGCAGA TACTGACAGA AATTAAAGTA AAGGGATTGT GAAAGTAAAG AGCTCTTCCT GATTCTCATC TTCTCTTTTT 002160
002161 TCTATTACAA GGCATTGAAC TTGGCACTTC CTGTATTCTT TGTGATCACT ATTGAGTGCA TTAGTTAACA CCCAAGGGGA 002240
002241 TGGCTTGATT GGGAATGTAG TGAAAGGAGC TGATCTACTG TATTGTAATG TAAAACAGCT ACAGCCAGTT ATTTTGTAAG 002320
002321 ATTATAAGTT GTTCATTAAA AAATCAGCAC AC
[back to top]

Predicted Small Protein

Name NONHSAT007785_smProtein_443:562
Length 40
Molecular weight 4396.9488
Aromaticity 0.025641025641
Instability index 65.5282051282
Isoelectric point 10.8779907227
Runs 6
Runs residual 0.0148944193062
Runs probability 0.0470764882531
Amino acid sequence MKEQARAVRVKSRPGHENGSDQGDSVLVPSLQRRPKWVP
Secondary structure LLHHHEEEEELLLLLLLLLLLLLLEEEELLLLLLLLLLL
PRMN -
PiMo -