NONHSAT008337

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT008337

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1025 nt

Genomic location

chr1-:182806324..182809019

Exon number

2

Exons

182806324..182807069,182808447..182809019

Genome context

Sequence
000001 GGCTCGTCCC TTCCCCCACC CCCAGCCGCC GCCGCCGCCC GCGCTTCGCA ACAAAGCCGG CTGCGGAGCC ATGGTCCACG 000080
000081 GCGCCCGCCC GCGACCCCGC CGCCCCGCAT GGTAGCCGGA ACGTCTCTCC CTTACCAGCC TTCGCTTCCT GGTGCCCAGC 000160
000161 TCTTAGGACC GTGTGTGACT CTGGCCTTCT ACCGAGACAA CAGAGAAACG CACAGCAACT CGCATGGAGG AATCGGCGAA 000240
000241 ATGGCTCCGA CCGCGGCGCT AGGGGGCGGG GCCAGCGAGC GGTGTTGAAA GCAGCAGGGG CCTAGAAGAC ATTAAACCGA 000320
000321 TACCACAGAA ATACAAAGGA TCATTAGAGA CTATTATGAA CAACTATATG CCAACAAATT GGAAACCAAA TGGAAATGGA 000400
000401 TAAATTCCTG AACAGATACA ACTTACCAAA ATTGGACCAA GAAGAAATAG AAAACCTGAA AAGACCAACT ATGAGTAATG 000480
000481 AGATTAAATC AGTAATATAG AGTCTCCCAT CAAAGAAAAG TCCAGGCCCT GATGGCTTCA CTGCTGAATT CTACTGAACA 000560
000561 GTTAAAGAAG AACTCATACC AGTTCTCAAA CTCATCCTGT GAGGGCAGCA TTACCCTGAT ACCAAAACTA GATATGGACA 000640
000641 CAAGAAAAAA AATCTATAGG CCAGTATCCC TGATGAACAT AGATGCAAGA ATCCTCAACA AGACCAGGTG TGGTGGTTCA 000720
000721 TGCCTGTAAT CCCAGCACTT TGGGAGGCCA AGGCAGGTGG ATCACCTGAG GTCAGGAATT TGAGACCAGC CTGGCCAACA 000800
000801 TGGCAAAACC CTGTCTGTAC TAAAAATACA AAAATTAGCC GGGCAAGGTG GCGTGTGCCT GTAATCCTAG CTACTTGGGA 000880
000881 GGCTGAGGCA GGAGAATTGC TTGAACCTGG AGGGAGGAGG GGCAGAAGTT GCAGCGAGCT CAGATCGTCC CACTGCACTC 000960
000961 CAGCCTGGGT GACAGAGTGA GACTCCATCT CAAAATAAGT AAATAAATAA AGAGACTCAA CTAGC
[back to top]

Predicted Small Protein

Name NONHSAT008337_smProtein_719:979
Length 87
Molecular weight 9604.9132
Aromaticity 0.0697674418605
Instability index 89.9476744186
Isoelectric point 9.49041748047
Runs 9
Runs residual 0.0349704963554
Runs probability 0.0490686765196
Amino acid sequence MPVIPALWEAKAGGSPEVRNLRPAWPTWQNPVCTKNTKISRARWRVPVILATWEAEAGEL
LEPGGRRGRSCSELRSSHCTPAWVTE
Secondary structure LLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELEEEELHHHHHHHH
HLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -