NONHSAT008489

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT008489

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3528 nt

Genomic location

chr1-:189958700..189962227

Exon number

1

Exons

189958700..189962227

Genome context

Sequence
000001 GGCGGCAAGG ACAAGAAACA CATGGCTCTG GTGACCACGG TGGTCCGGTG GTCCGGGCCG CCATGTCTGC TTTCAGAGCC 000080
000081 AAATCAACCA CTGGGGCTGG AACTGCCCAG GAGGCCCAAA ACAAAAAGCC GGTGTCCAGG CCTCCCTCCC GACACCGCTG 000160
000161 CAAGCACCAG GGAGCCCTGA GTCAAGCAAG GCCCCAAAAT TTATAGTTTT AATTCTACAA ATGATTCTGG TTGTCCTGCA 000240
000241 AGTCTGGGTA AATCTATGTT GAAAGTGGTA ATTAATAACA AATTAGAGCA AGGAATTATG GGAGTGAGCA ATGACAAGCA 000320
000321 AAACAATGAC AAGGGAGTGA TTTCTGGAAG ACTTAATGCC AAAAAATTGC AGGATTTTTA CACAGCTTTA CAAGCATTTT 000400
000401 TATTTAAGAC TAAGACATTG AAGATGTCAC GACCAATGCT CTCTTACATG GAGGTGACCT TCATTCTGCC TTGGATTGGC 000480
000481 TCTGTTTAAA CCTTGCAAAT GATGCACTGA AAGATTCAGT TAAGAATTTG AAGGGCAACA ACCTAAAAGT AGGCTGAAAT 000560
000561 TGCAGTCTCC TATACAAAGC ACTATTTCAC CTCCATTGCA ACCTAAAACA AAACAAACAA ACAAAAGAAT AAGACCCTAA 000640
000641 GATGAAGCCA AAAAAGGAAG AAGGAAATAT GGAAGCAAAT ATGAAAGAGT GGATTTCACA GTACACTAAA CAACAAATGA 000720
000721 AGAAGAAAAG AATGAGAATT CTAAAAGTTT AGAAGAATAG GAAAAAAAAA ATTGACCCCA ACGAAAGTTA TTTACATCTT 000800
000801 GCAGCAAAAC TGCTAGATGC AAAGGAGCCA GCAGCTGCCT TTAAACTGGa aaaaaaaaaa aaacaaaaaa aaaaaaaaaa 000880
000881 accaaaaaaa aaaaaaaaaa aaaCCAGGCA AGACCAAAAG GAGGCTCAGG AAAAAATAAG GAAATTTCAA AGAGAAATTG 000960
000961 AAACTTTAGA AGATGATCCA GTATTTAATC CAGCCATAAA GATTTCACAT CAACAAAATG AAAGAAAAAA AGCCTCCTGT 001040
001041 GGCCATAGAA GGAGAAAGTG CATTGAACTT TTCAGTTATT TGAAAAATCT GCAGCTGCTA CTGAAGAAGA GAAAGATAAA 001120
001121 AAGAACCTCA TGATGTAAGA AATTTTGACT GTACTGCTCA ACGCTGAACT GGAAAATCTC CCAAACAATT TCTGATTGAC 001200
001201 TGGTTCAGGA AGACTCTTCC CAAAAGTCGA AATCCTTCCT TTGAAAAAGT TCCAGTAGGT AGATGCTGGA AATGTAGGGT 001280
001281 TAGGGTAATC AAGTCTGAAG ATGCTGTCCT GGTAGGTTGC CTACAATCTT AACAGAGGAT GGCATGCAAG CTCAGCACCT 001360
001361 GGGAGGCACT TTAGTTCTTT ATCATTTAGT TAAAGGGCAG TCAGTTTATC AGTGACTTCA TCCTACTTCC CAAGATGTTT 001440
001441 GGCTGGAGTA CAGTGATGAG GAAAAGAAAA GAGAAGAATT AAATAAAATG AAAACCAATA AACCATGTGA TCTTTTTATT 001520
001521 GCCCAACTTT TGAATATATT GAAACAGCAG CGACAACAAC ATTCTGAAAA TAAGAGAGAA ATCTCTAATA ATCCTGAGGA 001600
001601 ATCTTGGGAA AATTTAGTTT CTGATGAGGA TTTTTCTGCA CTGTCCTTGG TATCAGCAAA TGCGGAAGAT TTGGAACATG 001680
001681 TTAGAAACCT CTTTAGAAAG TTGCAAAGCA CACCTAAGTC TTAGAGACTT CTAAAGGAAA GACAGCAGTT TCCTGTATTT 001760
001761 AAACATCTGG ATGCAGGTGT AGAAACTCTT AAAGGCACTG GGGAGTGGTT GTGGCAGGTA AAACCAGGAG TGATGAAAGT 001840
001841 ACTCAGGTAC CACATTTTCT GTTGGAAGAT TTGCTTCTAA ATGAGTGGGG AGCAAGTAAA TGTAACATTG CCTATACCTA 001920
001921 ACCTCAAAGG ATCTCAGCAG TGAGTTTAGC CACCAGAGTG TGTGATGAAT TGGGCTGTGA AAATGGAACT GGAGGAAGGA 002000
002001 ATTCTTTGTG TGGATATCAG ATCTGGATGT TATCTGAAGC TTGTGAATCT ACCAGTGTAC TCTACTGTAC AACAGGGGTT 002080
002081 TTGTCAAGGA AACTTCAAGA AGATGGTCTT TTTACTAATG TGTCTCACAT TATTGCAAAT GAGGTTCGTA CAAGAAGTGT 002160
002161 CCAGTCAGAC TTCCTACTAA CTGTCTTAAA GGAAGTTTTA CAAAAACATT CTGATCTCTA CTTGATTCTA TGAGTGCCGC 002240
002241 TGTGGACAGT GAAAAATTTT CCACATATTT CACACACTGC CCCACTCTCA GGATTTCAGG AAGAAGTTAT TCTGCTGAGG 002320
002321 CTTTTCAACA TGAAGATATA ATAGAAGAAA CAGACTTTGT ACAGGAAAAA GAATCAGGAT ATTGTCAGAA ATTTCTGGAG 002400
002401 AAGGAAGAAG AAATAACCAT TAATGTTACA AGCAAAGCAG GGGGATCAAA AAAAATCAAG AATATATTTC AGTTCAGACT 002480
002481 AGAGCAAATG CTGATTTAAA TCTATTCTAC CAAAAGTACA GCAACTTCAC TCAGCATGCT ATTCTCTACA CTTGAATCCT 002560
002561 CATAAAATCA ACCTGGATTT CATTTTAGAA CTTCTTGCGT ATTTAGATAA AAGTTCCCAA GTCGGAAATA TTGAAGGAGC 002640
002641 AGTATTAATC TTTTTACCAG GCCTTGCTCA TATTCAGCAG TTGTATGATC TCCTATCAAA TGATAAAAGG TTTTATTCTG 002720
002721 AACGGTATAA ATGGATAGCT CTGTATTCTG TTCTTTCAAC CCAAGGTCAA GCTGCAGCAC TCACACTTCC TCCTGCAGAA 002800
002801 GTCAGAAAGA TTGTTTTAGC AACAAATTTT GCAGAGACGG GTAGCGCTAT TCCAGATATT GAGTTTGTAA TTGATACTGG 002880
002881 AAAAACAGAA GAAAATAAGA GCCATGAAAG CAGATAGATG AGTTCTTTGG TTGAGACATT TGTCAGTAAA GCCAGTGCTT 002960
002961 TGCAGTGCGA GGGGAGAGCT GGGCAGGACA GAGATGGCTT CTGCTTCTGG GGGTACACAA GAGAAAAATA TGAAGGCTTT 003040
003041 ATGGATTATT CTGTTCCTGA AATCTTACAT GTACCTTTAG AGAAATTATG CCTTCATATT ATGAGGTGTA ATCATGATTC 003120
003121 TCCTGAAGAT ATCCTTTTCA AAGCCTTAGA TCCGCCTCAG CTCCCAGTGA TCAGCCATTC AATGAATTTC CTCCAAAAAA 003200
003201 CTGGAGCTTG TAAGCTAAAT GAGCCTCAGC TGACTCCGTT GGGCCAACAC CTTGCAGCTT TACCTGTGTA TGTCAAGACT 003280
003281 GGCAAGACGC TTATTTTTGG TACAGTATTT GGCTGCCTTG ACCCAGTGGC AACACTAGCT GCAGTTATAA CAGAGAAGTC 003360
003361 TCCTTTTACC ACACCAATTG GTTGAAAAGA TGATGCAGAT CTTGCAAAAT CAGCTTTGGC CATGGTGGAT TCAGACCACC 003440
003441 TGATCATCTA CAATGCATAT CTAGGATGGA AGAAAGCACG ACAGGAAAGA GGTTATCATT CTGAAATCAT ATATTGCCAG 003520
003521 AGGAATTT
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Predicted Small Protein

Name NONHSAT008489_smProtein_1487:1723
Length 79
Molecular weight 9053.0008
Aromaticity 0.0512820512821
Instability index 62.9423076923
Isoelectric point 5.60821533203
Runs 11
Runs residual 0.0073483427142
Runs probability 0.0416887475712
Amino acid sequence MKTNKPCDLFIAQLLNILKQQRQQHSENKREISNNPEESWENLVSDEDFSALSLVSANAE
DLEHVRNLFRKLQSTPKS
Secondary structure LLLLLHHHHHHHHHHHHHHHHHHHHHHLLLEELLLLHHHHHHLLLLLLLLHHHHHHLLHH
HHHHHHHHHHHHHLLLLL
PRMN -
PiMo -