NONHSAT008565

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT008565

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6409 nt

Genomic location

chr1+:193224754..193233744

Exon number

8

Exons

193224754..193225611,193227162..193227386,193227477..193228190,193228276..193229098,193229687..193230635,193230781..193230799,193230821..193231356,193231457..193233744

Genome context

Sequence
000001 CATGAAAAGA TTATTGGGAT TTGTCAGGCA TAGTATTTCT CTGAGGAATA AATGAAATAT AAATTTCACT TTGGAAACTA 000080
000081 ATGAGTTAAA ACCATTTACA GTTTCTGTTA ACGAGTTAAA TAATGTATAG AATCATAGTT CGTAATGGTA GCAAGTTCAT 000160
000161 GCTCTGCTGA ACTTACTGTT TGATTATGGT CAAATTTTCT ATGTTATTAT TATAGTAGAA TTAAGAGTGT GTCCTGGTAA 000240
000241 ATTACATTAC CTTCACAGTT TGAGCATTCT GATTTTAACA TTTTGTAGTT TCAAAACAAA CTGTACTCAT ATAATCAGAG 000320
000321 CATTAACAGC AGCATCATGT CAGTGGTACC AATAATTGTG AATCTTCTGC AACAAAATTT CTTTAATGAT GAGTTTAATG 000400
000401 GGCTATATTC AAACCTAATT TTTATTCAAT TCATAAGTGC CCACTAAATA TGTATTTTAT TTCTGCTGTT CTGTTCCTTT 000480
000481 GATTATCTGC TTTTCAGTGA GCATCTGCAT AGCTAAAATA GATATAGCAT GTGTTGTAAA TGCTGTTGAA TTTTTTTAAG 000560
000561 GCTCAAAGGT GCTAGTATAT AAATAACAGC ACATTGCCAA ATAAGCATTT TTTCTTTCAT TTTCTGAAGT ACTTTCATAT 000640
000641 TTACTCATGT AATTATCAGC ATTTATGGTG AGTTGGAATA ATTTTTCCTC TTTATTTTCT TAAATGACCC TAGAAAACAA 000720
000721 TGTAAAGTAG CTCTGAAGAA GGCTTTGTTG TTGAATCTGT CTCATAATTA CTTGTGGATC CTTTGACACA AATTATTTAT 000800
000801 AGTTTATAAT TCACCCTCAT CTAGAGAATG ATGATTTCTA TTACATAAGT AATGTAAATT ACTAAGAGAG AATATCCTGA 000880
000881 GCAGTTCCCA ATGGTGGGTG GCTGGCTAAA AGGAATCCCT GGAGATTTTA GTGTGGTAGG AAAGCATTTT CATTCTTGAG 000960
000961 GATTTTTCTT TGACTTTTCT ATGGGCTGGC TGATTTCCTC AGTTTGCTTT GTTCTGGGTT TTAGGGGAGA ATTCTTGGGA 001040
001041 GGTTGTGAAT TTTCTTTGCC TACAGTGAGA TGGTTAGATG CTGAGTTTTT CGTTCTCACT CACTCCCTTG CCAGTTCCTT 001120
001121 AGATGTTATG ATCCAGCTAT GACCCAGCTT TACACTTTCT TCACCCAGAA GTGACCTCAC CTTTTCATGA CAGAGGAAAC 001200
001201 AGAAGCCATG GACTTCTTAA TGCTATATGT CACAAACCTG TATGCATGTA AGAATCTTTT ATTTCCTCGT ATTCCAGTGT 001280
001281 TTTAAACATC CTGTCACCCA TCAGGGACTT GTCCTTCATA TGTATTTCTC CTACACCTTT CCTACTCTGT CATGCATTTT 001360
001361 GCACTATTAC TGTATCTCTT TCTTGTATTT TCATCTTGTC ACCCTGTATT TATTTATTTT CCACCCACTT TTAAACTTAG 001440
001441 TTACATCTTT CATGGTAAAC AGGTTCTAGG GAGATGGTTT GATTATGTAT CTTAAATTCC CTCCCCTCAA TCTCTGTTTC 001520
001521 CATCTGCCAA CTACCCTGTC TTGAATAGAG CAGCTGCTGT GAGCCTGGAG CCTTTGGGCA AATAAGAGTG TATACAGTCC 001600
001601 CTTGATTTTA CCAGAAGATG GGAAAGAGAG CTTGCTTTGA TTTTCTTCCT GTAATCCAGA TGAAGGTTTA GAGACGGGCA 001680
001681 GCTGTGAAGC CTTCAGCAAA GGTCTGAACG GAAAGAACCT TGCTTTCAAA GATACATGGA TTTAGAGGAA AAGCGGTGCA 001760
001761 GTTCATATGT ATGGTACTAG GAAGACTAGC TTCAGAAAAA GACATTGGAA GAGATTTTCC TCCTGTCATC TGTGATGAGG 001840
001841 AGTGGCAACT TGCTGGTTAG TAGATAATCA GCCTACAGAA GAGAGCTGCC TTCTATTGCT CACAAGTTTG TTTCCGCTCA 001920
001921 AGAGTATCCC ACAATTTGAT TTATGCTAAA TGGGGAGTGA GTGGACAAAG AAGAATATCT AAGGAAACCT AAAGAAAAAT 002000
002001 AGCATCTAGA GAGAACAGGA ACACAGAAGA AATGGATGGT GAAAAAGAAT TGCTGGTGGA GATGAATGAC AACTTTAATT 002080
002081 TTGAAAAAGC ACCTGAGAAA ATTCAGTCAG TATAAAATAA ACTTTCTAGC AATTAAACTA CATTAAAATG TGGTAGAAAA 002160
002161 AGAGAGGCAT GGCCACTATT GGGGACTAAA TAGTGGCCTT GGATATCATG TAGAAGTAGT TATCTTTGGA AAAGTAAAAA 002240
002241 TCCAAAGACA CGGAGATTTC AAAAATCAAA ACACCTAGAA GACGAGTCTA AGATATTTAA TGTGAGTAAG TGAAGAACCA 002320
002321 CAAGGAGAAA AAGGGAAACG ATACAGGAGG GCACAATTAC TAAATACTAT AGGAAACTTT AGTTCGAAAG GGCTCTCACT 002400
002401 CTAATAGGTT CCAAGCAACA TGGGTGGGGT TGGAGTGTGG GGACACACCT AGGCAGATAA ATTTCATTCA AATATTTATT 002480
002481 GTTACTTCCT GCAGTGACAA GTACTGTTTT AGTTGCTGGG AATACAGGGT GAACAAAGCA ATGTTAGTTC CTTTATTGGG 002560
002561 TGGAAGGAAG TAAATGAATA AATATGTCTC AGGTGGTAAT AAGTAATACA AAAAAAAAAA TTACAATGTG TGAGATACAA 002640
002641 ATCAAAAACA CTTCTTTTTT TTTTTTTTCC CCTCAGTAAC AGGATGGAGT TTCTGTTTAT ACTGTGATGG GGAGGATTGT 002720
002721 GTAAGGATCA GATTTTGCAG TGGTAGCAGC TGGAGGAATC AATTTAGTTT CGGAATGTTG AGTTTGAGAT GCTATTAAAC 002800
002801 ATGGAGGAGA TATTCAAATT CTTGAATTTC AGGGTAAAAA GAGGAATTTA CAAAGGAAAA AGAAAATGAC ATCTCTAGAC 002880
002881 TTTAGAATGC AACCAAGAAT CCCTTTTTCA GGTAAGATCA TTCATCTTGA GGATATGTAA TGATCCAAAT GATATATCTG 002960
002961 TATGTGTATA ACTTCACATA AGGAAAATAA CTTAAAAACT TTAAACAGAC AGCAAATTAT AACAAAGGCC TGTATTCTCT 003040
003041 GATAGAGTGA CTGGGTATTT ATAACATAAG TGTTAAGTAA TCTTCAAGCA GAAAAGATAA TACATGGAAA AATCTCACAC 003120
003121 TAGTAACTAT CAGTACTAAA GTAAGCTATC TTAGCAAAAC TTAGAAGTGA CAGCTGAGCC AGAGGAGTAG AGTGAGTGAA 003200
003201 AGCATTCTAA ATTTCACAAC CCTAGTGACA ACAAATGTTT GCCTTCATGG AAGAACAACA TTTGTTCTTG CAACTAATCA 003280
003281 GAACTTACAT ATTTTTAACA AGTAGCTTTC TAAAAGCCAC TAAAGCCCTT TGGAATATTT TTTAAAACAA CTTCTTTTGA 003360
003361 GGTTATGGAG ATTTTTAAAT AGGTCAGGAA ATTATTTCTA AGTTGTTATA TTGTGAAGAT AAAAAAGTTT GGTAGGTAAT 003440
003441 ATGTTTGCAG CCACAAAAGC ACAAAATACA ATGTTTTTAA TATTCAAGAT GTTTCAAAAT GTTCTTTACG TGGCACAAAC 003520
003521 TTTTTTCTAA AAGTATTCAC AGACTTCTGG TCATCTGATT TTATAATTTT CCATTTTGTG TGGCATGGTA TGCTGGATGC 003600
003601 GAGGGGATAA GGCTTCACTG TCAGGTCTTA TTCTCCCCTC ACCTTATATA CAGATCAGAT GAAGCCATCT GTACCCATAT 003680
003681 ATTAACTATT AATAAAGTTG AATTTAAATA CAAATATGTA TTTTAACATC TTCTTCTAGC ATCCCACTGA ATTATCTTGC 003760
003761 ATGTTCCCTG AGGTGTGTGT GCCTTACTTT GGAGACCTAT AGTACTAAGT AAAAATCTTT TTATACAGTA TTTGTCTTGT 003840
003841 GTGGGTCATG AGCATTAGCA TCCAATGGTA GGTGTGTGAT TAAAATGCAG ATTCCTTGGC CCCGTCCCAA ATTTACTAAA 003920
003921 TAGGCCTTTG TGGGTTATAG CCTTGGGATC TACAAATTTA ACAAGATTGA GAAAACCTAA GGCCTAATTA TCTTTCAGCC 004000
004001 TCATCTAATC CTTCCCTCCC AAAGACGTGA GCGCCACATA CATTCTTTTG CAGCCTCTCA ACACACCATT CCTTTTCGCA 004080
004081 TCTCCATACC TCTGTAAATG TTTCTTTCCC TGCCTGGAAT GTTATGAACA GCATAAGGTA TTTGCCATTG TTAGTATTAT 004160
004161 CCCATATGAG AAAAAAAAAT AGACCAGAAT TAATGCTCTT AAAGCTAATT GAGCAAAGAT GTGTTTACAT CAATGTTATC 004240
004241 CATGTTCTCA TTGATTTATG AAAATCAGAT ATTTATTTTC CACACATATA CTACAAAATC TTGAAATCTA CTTGTATGGG 004320
004321 GATGATCACA GATTGTATCT GAAGAAATGA ACACACACAC AAATATATAT GGAAGACTAA GTAGTCATAG CAATATCTAG 004400
004401 TAAGGAGTAA TTAAAAATTC ACTTTTTCCC TCTTCCATAC TTTTATAACA TCAGCACACC ATTAAATTAT AGTAATCACC 004480
004481 GCACTGTAAT TCATCTTCAA AATAGTGGGG TGTACCAGTT ATCAATTTGT TATCTGTGAG CTCTAAGGTA CACCTTGCTT 004560
004561 TGCAGTGTTG AAACTCGATG CTTGTACAGG TTTCTCCTTT GTGAGCAGGT TCAGTGTTAG GCTTTTTCAT TGGAGGGACA 004640
004641 CAGTAAGGCA ATAGCAAGGG GAATAGGCTT CTCTTTCTGG TTCTGGTGTG CTGTTATTTG ATTGGCTGCC AGCAGATTGG 004720
004721 CCTGCAGAAG GTCAGTCTCA CCTCAACAAC CTTCGTAAGG GTGGCCCACA CCTTCCTTTC AAGTTTCTCT GCTGCCTGGT 004800
004801 AAAATGTCCC TACAGAACAC CTTTGGCCTA CCCAGAACCT CCAGTGATTC TTCTACCGGG TGAGGTGCTC TGATTCGATC 004880
004881 AGCTCTGGCC TTTCCCCTTG GTAAATTTCT TCCATCTACA GCCCAAGTTC CTGTGGCAAC TATGCCCTCT CCAAAGAGTT 004960
004961 CTGAGTCTCA GCCCTGGAAT AGTGCTGGGG AGTGACTCAT GAGTTCTTAG TATTCTTTCT CCCTTTGTTA TTTCCGTACC 005040
005041 CGTTAGAATC TTCTTTATAA CTTTTAGTAA ACCATCTTTT ATTAACAATT TTCTATATTT AATTTTCTCT ATTCAAATTA 005120
005121 CTAGTTTGTG CAGAATCTAG ATTTTATAGA AAAAAACAAA CAAATGCCTA GTGATTTGTT TCTATCTCCC TCCTGTGTGG 005200
005201 TTTCTATCTC CCTCCTGATT GGATCCTGAC TGATACGTTG GGGTATGCTG CTCATGAGAG ATTTCTTTCA GAGTGGTGAA 005280
005281 TAAACTATGT CCTAGAAGGC ATATTGTATC AGGAAGGGTC ACGTGTTAGA GCTGTGGTTT ACATTAATAT ATACAGTGTT 005360
005361 AGGAGGAGCA TAAAGAGGAA AACACCATTG TGGCAAAGTA ATCCTGTGGA AACCAGAGAG AGAGAGATTT GATAAAGTCT 005440
005441 TGGTGACTGA CCTGAGTACG AAACCAGTGG TGGTGGTAGT GGGAATCTTT AGATTAATGA ATATTGATTT ATTCATAAGC 005520
005521 TACAAAATTC AAAGGGCACC CAGTTTCTCT TTCTAGAGGT AATTACTATG TTCAGATTCC TGGGACCTTT CCAGGTATCT 005600
005601 GATGTATAAA TACCTCTCTC TCTTTCCCTC TCTTTCTAAC ACAGATATTA GTATTCCTCT GTGTCTTACT TTATCCCCTT 005680
005681 AATAGTATAT CTTGGAAATC ATTGTTTTCT TTAAAAAAAT GTTTTAATTG AGGTAAGCAT TCATTATACA GTAAATGTCT 005760
005761 TGTTCCTTTT AACTGGCTGC ATACCCTGTC AACCTATGGC TGTGCCAACA CTGGAGAGAG TCTGGGTTGA GTATAGTCTT 005840
005841 TTTGCCATTA TAAACAGGGT TGCAGTGAAC ATTCATGTGT ATACTTCTTT GTACCTATGT ATGAGTGTAT CCTGGATAAA 005920
005921 TTCCTAAAAG TGACGCCACT GGATTGGAGG TCATTTTTTT TTAAACTTTT TATTTTGAAA TAATTATAGA TTCATAAGAA 006000
006001 GTTGCAAAAA CAGGACAGAG AGGCCCCAGT TGCCCTTCAC CTAGTTTCTC CCAATGATAG CATCTTACAT AACATGATAC 006080
006081 AGCATGGTAT ATCATATCAA AACCAGCACA TTGGTACAAT CTACAAACCT TATTCAGATT TCACCAGTTT TACATGCCCT 006160
006161 TGTGTGCATG TGTGTCTGTG TCTTTGTGGT TTTATGTGCT TTTATCAGGA GTAGATTTGT ATAACCTCAA ACAAGATGCA 006240
006241 GAACTGTTCT GTCAGCACAA AGATCCCTTG TGCTACCTCA TAGTCACACC AAACCTCCTC TCCTCCTTTT GTCATCACGG 006320
006321 CATTCCTAAC TGTTGACAAG CAGCTAATCT GTTCTCCATC TCTGTAACTT GTTATTTTGA GAATATAATT GAAATCGTAT 006400
006401 AGCATGTAA
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Predicted Small Protein

Name NONHSAT008565_smProtein_1226:1468
Length 81
Molecular weight 9771.6259
Aromaticity 0.2375
Instability index 48.133875
Isoelectric point 8.80084228516
Runs 8
Runs residual 0.0388157894737
Runs probability 0.0700295884118
Amino acid sequence MSQTCMHVRIFYFLVFQCFKHPVTHQGLVLHMYFSYTFPTLSCILHYYCISFLYFHLVTL
YLFIFHPLLNLVTSFMVNRF
Secondary structure LLLEEEEEEEEEHHHHHHLLLLLLLLLEEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHH
HHHHHHHHHHHHHHHHHLLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH
HHHHHHHHLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT
TTTTTTTTiiiiiiiiiiii