NONHSAT008565
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008565 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6409 nt |
Genomic location |
chr1+:193224754..193233744 |
Exon number |
8 |
Exons |
193224754..193225611,193227162..193227386,193227477..193228190,193228276..193229098,193229687..193230635,193230781..193230799,193230821..193231356,193231457..193233744 |
Genome context |
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Sequence |
000001 CATGAAAAGA TTATTGGGAT TTGTCAGGCA TAGTATTTCT CTGAGGAATA AATGAAATAT AAATTTCACT TTGGAAACTA 000080
000081 ATGAGTTAAA ACCATTTACA GTTTCTGTTA ACGAGTTAAA TAATGTATAG AATCATAGTT CGTAATGGTA GCAAGTTCAT 000160 000161 GCTCTGCTGA ACTTACTGTT TGATTATGGT CAAATTTTCT ATGTTATTAT TATAGTAGAA TTAAGAGTGT GTCCTGGTAA 000240 000241 ATTACATTAC CTTCACAGTT TGAGCATTCT GATTTTAACA TTTTGTAGTT TCAAAACAAA CTGTACTCAT ATAATCAGAG 000320 000321 CATTAACAGC AGCATCATGT CAGTGGTACC AATAATTGTG AATCTTCTGC AACAAAATTT CTTTAATGAT GAGTTTAATG 000400 000401 GGCTATATTC AAACCTAATT TTTATTCAAT TCATAAGTGC CCACTAAATA TGTATTTTAT TTCTGCTGTT CTGTTCCTTT 000480 000481 GATTATCTGC TTTTCAGTGA GCATCTGCAT AGCTAAAATA GATATAGCAT GTGTTGTAAA TGCTGTTGAA TTTTTTTAAG 000560 000561 GCTCAAAGGT GCTAGTATAT AAATAACAGC ACATTGCCAA ATAAGCATTT TTTCTTTCAT TTTCTGAAGT ACTTTCATAT 000640 000641 TTACTCATGT AATTATCAGC ATTTATGGTG AGTTGGAATA ATTTTTCCTC TTTATTTTCT TAAATGACCC TAGAAAACAA 000720 000721 TGTAAAGTAG CTCTGAAGAA GGCTTTGTTG TTGAATCTGT CTCATAATTA CTTGTGGATC CTTTGACACA AATTATTTAT 000800 000801 AGTTTATAAT TCACCCTCAT CTAGAGAATG ATGATTTCTA TTACATAAGT AATGTAAATT ACTAAGAGAG AATATCCTGA 000880 000881 GCAGTTCCCA ATGGTGGGTG GCTGGCTAAA AGGAATCCCT GGAGATTTTA GTGTGGTAGG AAAGCATTTT CATTCTTGAG 000960 000961 GATTTTTCTT TGACTTTTCT ATGGGCTGGC TGATTTCCTC AGTTTGCTTT GTTCTGGGTT TTAGGGGAGA ATTCTTGGGA 001040 001041 GGTTGTGAAT TTTCTTTGCC TACAGTGAGA TGGTTAGATG CTGAGTTTTT CGTTCTCACT CACTCCCTTG CCAGTTCCTT 001120 001121 AGATGTTATG ATCCAGCTAT GACCCAGCTT TACACTTTCT TCACCCAGAA GTGACCTCAC CTTTTCATGA CAGAGGAAAC 001200 001201 AGAAGCCATG GACTTCTTAA TGCTATATGT CACAAACCTG TATGCATGTA AGAATCTTTT ATTTCCTCGT ATTCCAGTGT 001280 001281 TTTAAACATC CTGTCACCCA TCAGGGACTT GTCCTTCATA TGTATTTCTC CTACACCTTT CCTACTCTGT CATGCATTTT 001360 001361 GCACTATTAC TGTATCTCTT TCTTGTATTT TCATCTTGTC ACCCTGTATT TATTTATTTT CCACCCACTT TTAAACTTAG 001440 001441 TTACATCTTT CATGGTAAAC AGGTTCTAGG GAGATGGTTT GATTATGTAT CTTAAATTCC CTCCCCTCAA TCTCTGTTTC 001520 001521 CATCTGCCAA CTACCCTGTC TTGAATAGAG CAGCTGCTGT GAGCCTGGAG CCTTTGGGCA AATAAGAGTG TATACAGTCC 001600 001601 CTTGATTTTA CCAGAAGATG GGAAAGAGAG CTTGCTTTGA TTTTCTTCCT GTAATCCAGA TGAAGGTTTA GAGACGGGCA 001680 001681 GCTGTGAAGC CTTCAGCAAA GGTCTGAACG GAAAGAACCT TGCTTTCAAA GATACATGGA TTTAGAGGAA AAGCGGTGCA 001760 001761 GTTCATATGT ATGGTACTAG GAAGACTAGC TTCAGAAAAA GACATTGGAA GAGATTTTCC TCCTGTCATC TGTGATGAGG 001840 001841 AGTGGCAACT TGCTGGTTAG TAGATAATCA GCCTACAGAA GAGAGCTGCC TTCTATTGCT CACAAGTTTG TTTCCGCTCA 001920 001921 AGAGTATCCC ACAATTTGAT TTATGCTAAA TGGGGAGTGA GTGGACAAAG AAGAATATCT AAGGAAACCT AAAGAAAAAT 002000 002001 AGCATCTAGA GAGAACAGGA ACACAGAAGA AATGGATGGT GAAAAAGAAT TGCTGGTGGA GATGAATGAC AACTTTAATT 002080 002081 TTGAAAAAGC ACCTGAGAAA ATTCAGTCAG TATAAAATAA ACTTTCTAGC AATTAAACTA CATTAAAATG TGGTAGAAAA 002160 002161 AGAGAGGCAT GGCCACTATT GGGGACTAAA TAGTGGCCTT GGATATCATG TAGAAGTAGT TATCTTTGGA AAAGTAAAAA 002240 002241 TCCAAAGACA CGGAGATTTC AAAAATCAAA ACACCTAGAA GACGAGTCTA AGATATTTAA TGTGAGTAAG TGAAGAACCA 002320 002321 CAAGGAGAAA AAGGGAAACG ATACAGGAGG GCACAATTAC TAAATACTAT AGGAAACTTT AGTTCGAAAG GGCTCTCACT 002400 002401 CTAATAGGTT CCAAGCAACA TGGGTGGGGT TGGAGTGTGG GGACACACCT AGGCAGATAA ATTTCATTCA AATATTTATT 002480 002481 GTTACTTCCT GCAGTGACAA GTACTGTTTT AGTTGCTGGG AATACAGGGT GAACAAAGCA ATGTTAGTTC CTTTATTGGG 002560 002561 TGGAAGGAAG TAAATGAATA AATATGTCTC AGGTGGTAAT AAGTAATACA AAAAAAAAAA TTACAATGTG TGAGATACAA 002640 002641 ATCAAAAACA CTTCTTTTTT TTTTTTTTCC CCTCAGTAAC AGGATGGAGT TTCTGTTTAT ACTGTGATGG GGAGGATTGT 002720 002721 GTAAGGATCA GATTTTGCAG TGGTAGCAGC TGGAGGAATC AATTTAGTTT CGGAATGTTG AGTTTGAGAT GCTATTAAAC 002800 002801 ATGGAGGAGA TATTCAAATT CTTGAATTTC AGGGTAAAAA GAGGAATTTA CAAAGGAAAA AGAAAATGAC ATCTCTAGAC 002880 002881 TTTAGAATGC AACCAAGAAT CCCTTTTTCA GGTAAGATCA TTCATCTTGA GGATATGTAA TGATCCAAAT GATATATCTG 002960 002961 TATGTGTATA ACTTCACATA AGGAAAATAA CTTAAAAACT TTAAACAGAC AGCAAATTAT AACAAAGGCC TGTATTCTCT 003040 003041 GATAGAGTGA CTGGGTATTT ATAACATAAG TGTTAAGTAA TCTTCAAGCA GAAAAGATAA TACATGGAAA AATCTCACAC 003120 003121 TAGTAACTAT CAGTACTAAA GTAAGCTATC TTAGCAAAAC TTAGAAGTGA CAGCTGAGCC AGAGGAGTAG AGTGAGTGAA 003200 003201 AGCATTCTAA ATTTCACAAC CCTAGTGACA ACAAATGTTT GCCTTCATGG AAGAACAACA TTTGTTCTTG CAACTAATCA 003280 003281 GAACTTACAT ATTTTTAACA AGTAGCTTTC TAAAAGCCAC TAAAGCCCTT TGGAATATTT TTTAAAACAA CTTCTTTTGA 003360 003361 GGTTATGGAG ATTTTTAAAT AGGTCAGGAA ATTATTTCTA AGTTGTTATA TTGTGAAGAT AAAAAAGTTT GGTAGGTAAT 003440 003441 ATGTTTGCAG CCACAAAAGC ACAAAATACA ATGTTTTTAA TATTCAAGAT GTTTCAAAAT GTTCTTTACG TGGCACAAAC 003520 003521 TTTTTTCTAA AAGTATTCAC AGACTTCTGG TCATCTGATT TTATAATTTT CCATTTTGTG TGGCATGGTA TGCTGGATGC 003600 003601 GAGGGGATAA GGCTTCACTG TCAGGTCTTA TTCTCCCCTC ACCTTATATA CAGATCAGAT GAAGCCATCT GTACCCATAT 003680 003681 ATTAACTATT AATAAAGTTG AATTTAAATA CAAATATGTA TTTTAACATC TTCTTCTAGC ATCCCACTGA ATTATCTTGC 003760 003761 ATGTTCCCTG AGGTGTGTGT GCCTTACTTT GGAGACCTAT AGTACTAAGT AAAAATCTTT TTATACAGTA TTTGTCTTGT 003840 003841 GTGGGTCATG AGCATTAGCA TCCAATGGTA GGTGTGTGAT TAAAATGCAG ATTCCTTGGC CCCGTCCCAA ATTTACTAAA 003920 003921 TAGGCCTTTG TGGGTTATAG CCTTGGGATC TACAAATTTA ACAAGATTGA GAAAACCTAA GGCCTAATTA TCTTTCAGCC 004000 004001 TCATCTAATC CTTCCCTCCC AAAGACGTGA GCGCCACATA CATTCTTTTG CAGCCTCTCA ACACACCATT CCTTTTCGCA 004080 004081 TCTCCATACC TCTGTAAATG TTTCTTTCCC TGCCTGGAAT GTTATGAACA GCATAAGGTA TTTGCCATTG TTAGTATTAT 004160 004161 CCCATATGAG AAAAAAAAAT AGACCAGAAT TAATGCTCTT AAAGCTAATT GAGCAAAGAT GTGTTTACAT CAATGTTATC 004240 004241 CATGTTCTCA TTGATTTATG AAAATCAGAT ATTTATTTTC CACACATATA CTACAAAATC TTGAAATCTA CTTGTATGGG 004320 004321 GATGATCACA GATTGTATCT GAAGAAATGA ACACACACAC AAATATATAT GGAAGACTAA GTAGTCATAG CAATATCTAG 004400 004401 TAAGGAGTAA TTAAAAATTC ACTTTTTCCC TCTTCCATAC TTTTATAACA TCAGCACACC ATTAAATTAT AGTAATCACC 004480 004481 GCACTGTAAT TCATCTTCAA AATAGTGGGG TGTACCAGTT ATCAATTTGT TATCTGTGAG CTCTAAGGTA CACCTTGCTT 004560 004561 TGCAGTGTTG AAACTCGATG CTTGTACAGG TTTCTCCTTT GTGAGCAGGT TCAGTGTTAG GCTTTTTCAT TGGAGGGACA 004640 004641 CAGTAAGGCA ATAGCAAGGG GAATAGGCTT CTCTTTCTGG TTCTGGTGTG CTGTTATTTG ATTGGCTGCC AGCAGATTGG 004720 004721 CCTGCAGAAG GTCAGTCTCA CCTCAACAAC CTTCGTAAGG GTGGCCCACA CCTTCCTTTC AAGTTTCTCT GCTGCCTGGT 004800 004801 AAAATGTCCC TACAGAACAC CTTTGGCCTA CCCAGAACCT CCAGTGATTC TTCTACCGGG TGAGGTGCTC TGATTCGATC 004880 004881 AGCTCTGGCC TTTCCCCTTG GTAAATTTCT TCCATCTACA GCCCAAGTTC CTGTGGCAAC TATGCCCTCT CCAAAGAGTT 004960 004961 CTGAGTCTCA GCCCTGGAAT AGTGCTGGGG AGTGACTCAT GAGTTCTTAG TATTCTTTCT CCCTTTGTTA TTTCCGTACC 005040 005041 CGTTAGAATC TTCTTTATAA CTTTTAGTAA ACCATCTTTT ATTAACAATT TTCTATATTT AATTTTCTCT ATTCAAATTA 005120 005121 CTAGTTTGTG CAGAATCTAG ATTTTATAGA AAAAAACAAA CAAATGCCTA GTGATTTGTT TCTATCTCCC TCCTGTGTGG 005200 005201 TTTCTATCTC CCTCCTGATT GGATCCTGAC TGATACGTTG GGGTATGCTG CTCATGAGAG ATTTCTTTCA GAGTGGTGAA 005280 005281 TAAACTATGT CCTAGAAGGC ATATTGTATC AGGAAGGGTC ACGTGTTAGA GCTGTGGTTT ACATTAATAT ATACAGTGTT 005360 005361 AGGAGGAGCA TAAAGAGGAA AACACCATTG TGGCAAAGTA ATCCTGTGGA AACCAGAGAG AGAGAGATTT GATAAAGTCT 005440 005441 TGGTGACTGA CCTGAGTACG AAACCAGTGG TGGTGGTAGT GGGAATCTTT AGATTAATGA ATATTGATTT ATTCATAAGC 005520 005521 TACAAAATTC AAAGGGCACC CAGTTTCTCT TTCTAGAGGT AATTACTATG TTCAGATTCC TGGGACCTTT CCAGGTATCT 005600 005601 GATGTATAAA TACCTCTCTC TCTTTCCCTC TCTTTCTAAC ACAGATATTA GTATTCCTCT GTGTCTTACT TTATCCCCTT 005680 005681 AATAGTATAT CTTGGAAATC ATTGTTTTCT TTAAAAAAAT GTTTTAATTG AGGTAAGCAT TCATTATACA GTAAATGTCT 005760 005761 TGTTCCTTTT AACTGGCTGC ATACCCTGTC AACCTATGGC TGTGCCAACA CTGGAGAGAG TCTGGGTTGA GTATAGTCTT 005840 005841 TTTGCCATTA TAAACAGGGT TGCAGTGAAC ATTCATGTGT ATACTTCTTT GTACCTATGT ATGAGTGTAT CCTGGATAAA 005920 005921 TTCCTAAAAG TGACGCCACT GGATTGGAGG TCATTTTTTT TTAAACTTTT TATTTTGAAA TAATTATAGA TTCATAAGAA 006000 006001 GTTGCAAAAA CAGGACAGAG AGGCCCCAGT TGCCCTTCAC CTAGTTTCTC CCAATGATAG CATCTTACAT AACATGATAC 006080 006081 AGCATGGTAT ATCATATCAA AACCAGCACA TTGGTACAAT CTACAAACCT TATTCAGATT TCACCAGTTT TACATGCCCT 006160 006161 TGTGTGCATG TGTGTCTGTG TCTTTGTGGT TTTATGTGCT TTTATCAGGA GTAGATTTGT ATAACCTCAA ACAAGATGCA 006240 006241 GAACTGTTCT GTCAGCACAA AGATCCCTTG TGCTACCTCA TAGTCACACC AAACCTCCTC TCCTCCTTTT GTCATCACGG 006320 006321 CATTCCTAAC TGTTGACAAG CAGCTAATCT GTTCTCCATC TCTGTAACTT GTTATTTTGA GAATATAATT GAAATCGTAT 006400 006401 AGCATGTAA |
Predicted Small Protein
Name | NONHSAT008565_smProtein_1226:1468 |
Length | 81 |
Molecular weight | 9771.6259 |
Aromaticity | 0.2375 |
Instability index | 48.133875 |
Isoelectric point | 8.80084228516 |
Runs | 8 |
Runs residual | 0.0388157894737 |
Runs probability | 0.0700295884118 |
Amino acid sequence | MSQTCMHVRIFYFLVFQCFKHPVTHQGLVLHMYFSYTFPTLSCILHYYCISFLYFHLVTL YLFIFHPLLNLVTSFMVNRF |
Secondary structure | LLLEEEEEEEEEHHHHHHLLLLLLLLLEEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH HHHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT TTTTTTTTiiiiiiiiiiii |