NONHSAT008569

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT008569

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4644 nt

Genomic location

chr1+:193426728..193434850

Exon number

2

Exons

193426728..193427217,193430697..193434850

Genome context

Sequence
000001 GGTTGTTATG CTCAATCACT TTTGTTTTTT TTTCCTCCTA AAGTCCCAAG ACAAAGAATA TCTCTTGATA CTATTAAATA 000080
000081 TAGATGTCTG GACTGAATTG AGCTTACACG ACAATTGCAG TCAAGATTCT GCAACTCAGA ACGGGCAAAC CAGGTAAGCG 000160
000161 GTGCCATTTT TAGAACGTTG TTTTAATAAG GTTTATTCCT GTCTTGGTCG GCTGCATTTT ACATTTGTAA TCGTCAGGCT 000240
000241 GTGAGTGTGA AGAGTTATTG CCATGACGAC CAGGACTGAC TGACTTGCCT TTCAGAAATG GTAACGATTC AGCATGTTTG 000320
000321 TAGATGATAT CTGTGGTTCT CAATGACTTT CTAGAAGGTC ATACGGTTTT GGCAGATGTT CCCagtggtg tggaaagact 000400
000401 actggatgag aaaaaatgtg aactgtgttc tagtcctgcc tctccctgaa ccaggtgtat agcctcagga aaatctccac 000480
000481 ctattggggg TCTAGCACCT AAGCATCAAg ggtggaaagg gagactggaa gtgcaagtct gaaaggagaa aaaagaaggt 000560
000561 gaaaccagtc tgcaggagaa atgactggga atttagaagg agtgggcacc cacaagagaa gagaagacac gaagtgagaa 000640
000641 aaggctgctg cttgccaagg cacttttaag aacgggacat cttatcactt ttcagttgtt tgagcttctT GCTCCCCAGA 000720
000721 CTTTCAGCTA AAATtgtggc tgttttgttg gcggaaatca gtgaaaagaa aatgagttct gtgtctagtt cagtttacag 000800
000801 cagaggcaag acgatgcctg aagcaggtgg caaggagtga aaggggagtg tgcatggaag cagcaggtca gagccagagt 000880
000881 ttatcatgaa agtctgagcc ctcGCAAACA TGGTTCATGC ACAACCCATA AAATTTCATC AAACTCTCAG TCTCAAAAAT 000960
000961 TTGTGTAGGA AGAGCCTGAC ATGAATGCTG CAAATACATG ATTATTATTC CTAGACATAT CTAAGGGCAT CTAAAATTAT 001040
001041 AAAATTTATA GTGATATTGC TTAAATTACA TTTTTGAATA TCTCACTCAT ACATGTATTA CCTATATTAT TATACTGTTA 001120
001121 ATTATACCTT CATTGATTTT TTTTAAATTT TATTCTTTTG TTTTAAGTTT AGATGTGGAT GCATTTTCTA AAAACTACAA 001200
001201 GATTACCCAA ACAGAACCGA TTGAATTTCA AGGTTAGGAA GTTTTTCTAA TAATAATTTA TGGTCCAAGT ATAATGTGAT 001280
001281 GAAGTGTGCT TGTAGGTACC AACCTGAGAC TATATTTGGC AAGAGTTGAA TAAAATATGG GGGAAATGAT TTCTAGCCTT 001360
001361 GTTAGAAATG CCCTCAGAAT GCATTGTTAT TTCTAAAGAA TGCTGCATTG TATATATGCA GATATTTTTC AGCCAAATCG 001440
001441 CTGAATTTGT AGAGATTTCA TATCACATAA GATTTGTTTC CAATGCATTT TCTTCTGAAA CTATAAGAAG ACTAGCTTCT 001520
001521 CTCTTAATTT CTAAGAAAAA TGTTATAAAC CTTTATTATG ATGGTACAAT TTATGAAACA ATGTAAATTT TACATTTTCA 001600
001601 CTTTTGAGAG TTATTTTTCC CCAAGCCTCT GCCTTTTTTG AGTATTTGCA AAGCTCTGCA AATGACAGGC GCATCCACAA 001680
001681 TGCAAAGAAT AATCTTCCTT TGGGGCTGTT CCTGGGGTAG TGATTAGTAG CGTCTTCACT GAATATTTAA CTTCCTCAAA 001760
001761 ACTGCTTATC TGTGCTGTGG ATCAGTGCAA GATCTGGGTG AGCTGTTGCT ACTTTACATA ATTAAGTTTC TCTTGCCAAA 001840
001841 AAAAGAGAAA GTAACAAAAT ATGAAGCAAA AGAAGCCGAA AGTTGGACTT TTAAAACATT CTCCCTTCAT GTTATTTTCT 001920
001921 CATTGAAAAT AACCTGAAAC AAAAGCAAAA TATTTGAGAT TTAGGAGGGA GTTTATGCAG ATCAGTCAGG TTGACAGCTC 002000
002001 ACATTTTCTT GCAAAACTCT TAGGAATTTT CCTCCGCAAA TCCCTCCGCA GTCAGTGATA AGTACTAAAT GCCACAAAGA 002080
002081 AAACAATTTC CCATTGTTCA AAAACTGACT GGTGAAGTAT TGTGGGTGAG GCAAAAAAGA GGGTAGGGAG AGAAATTCTA 002160
002161 TTGTAGGGAA ACTAATGCCA GACAGAGCTA TTAACTCAAA TGTACTGAAA TGATAGATAA TTCAAGCTTC TCATGTCACT 002240
002241 TTAAATTAGT AAAAAATCAC TGCACAGGAT TTGTGCTTAA TCCCATTTTT TATATGTAGA AAATAGGCCC CAGAATTAGG 002320
002321 TTGACGTGTA CTTTTAATGT GTAGATAGGA CATCTACTCA CTTTCTAGGC ATGTGTGGAT GAAAAAGACT TTGCTTGCTT 002400
002401 AGTTGCACGT CATTCTTAGT TCCTTCTCTT TTGAGTGTGC TAGCGTACCC AATGGAATCC CCTCCCCTGT ATTTATTGAA 002480
002481 CGCTATAATG TATGGGGGTG TCTTTTCCTG GTTAGTGTAA TAGGAAAAAT TGCATTTGCT TATCTATTGC AAATGAAAAT 002560
002561 CATCTGGGGA ATATAAAAAG CATTTTCAAT TCTGCTACCA TTATTTCAGA AGCAATCAAA TGCAGAGGAA TGAAAGTCAA 002640
002641 ACACGGAGAA AAATGCTGAT GGATTGGGCA ATGTGCATGG CTCTCTGGGA CCATCATTAT TTCAGTATTC AAGAGGAAAA 002720
002721 TGCACATTTG AAAGATGGTA AATTCCATCA CATACAATCA ATCATTCATC TCCTCTAGCA ACAATAATTG TGGAGGAGAT 002800
002801 AGTGTTCAGA CATTAACTAG GTAGTCATCC CTGCTTGTTT GTTAGTTTGT TTCAAGGCAT ACTAAATCTT ATGCAACGTT 002880
002881 ATGTGGACAT CTCAGATGAT TTTCAGATAT TGGTACTTAG TACCAATCAC CTGCAAATAA TGAGGTCAAA GTAAACACTG 002960
002961 CAACCTCAAA GGGCAAGATG CTTAGCATTG TCTTTCATCT AAAACATTTT GTCCTTTCAT TCCAGATTTT AAAAATAGGT 003040
003041 TATCTGCCTG CATTTTATGC ATTTTTCTAT CTTTATAATC TGAAGGTGAT TTTATTAATA CAGTAAATCT TGGTCAAGTG 003120
003121 ATACTTTAGG AAGATGCTTT TTCTGGGTAA ACTAAAAGCC TGACGTGGCT CTTCCTGATG TTCTTAAATA TTTTATTAGC 003200
003201 AATGTCTCTC CTCACCCCTT GCCTATTCAT AGTCTCTTTC AGTTTAATGA TATAAAGCAG GTGGTAGGGT TGTCAAAACT 003280
003281 GGGTTTCCAT TAGAAACAAT CTCTGGGAAT GTGGTGTATT TTCTCCCTTA TTTTTCTCAT TATTAGATAT CTCAGGCTCA 003360
003361 AAGGCCCATA TGGCAGTTTG GAGAAAGATA TGTCCTGTTC AAAACCAATG TTCTGAGAGT TTGAGAGCCG TGAAATCAGA 003440
003441 TATCATAGTT TTTACACTTT TTCAAAGCTT TCAATTGTGA ATTCTGGATT TCTCTTTTTC TTTCGAACTC TGAAAAAAGC 003520
003521 CCAATCTCTA ACAGCACCTC CCCTCCCACC CCCTTCTGGT ACTGGCTGTA GCAGTACTTA GGAAGGGAAG AGTGTCTTAC 003600
003601 AGGAGGTGGA GACACATTTA TACACCAGTC TTCATGCTTG GGAAAAAGCG ATTTAGTCAC TGTTAACTTC TTTAATTATT 003680
003681 GATGGTTCAG AAAATGTTAT CTTTCTTATC TTTTATTTGT AACACTTTTC CCTAAATAAA AGTGAGGCTG GATATTCAAA 003760
003761 TTATTATTTA GTGCAAGAAA CTAAAAATAG CTTTCCCTCT TTTTAGATTT TTTTTGACAA CAGAGATGAT ACATTATATG 003840
003841 TGTATATTTT ACCTTAATAA AAAGACTTAA AAAAAAAGAA AATTAAAGAG AAAAATAGAA AGAAAGGTAG GAAAGGCATA 003920
003921 GAAGGGGATA TGACACTTTA GAATCTCCTA GCTTAGAATG TGACAGAAGG AGAGTGTTAG TAAAACTGAG GAggctgggt 004000
004001 gcggtagctc acgcctgtaa tcctagcaat ttgggaggac gaggtgggct gatcacttga ggtgaggagt ttaagaccag 004080
004081 cctggctaac atggtgaaac cccatctcta ctaaaaatac aaaaaattag ctgggcatgg tggcaggccc ctgtaatccc 004160
004161 agctactcgg gaggctgaga caagagaatc actggaatcc gggaggtgga ggttgcagtg agctgagatc gacccattgc 004240
004241 attccagcct gggcaacaag agtgaaactc catctcagaa aaaaaaaaaa aaaaaaaaaa aaaaaaGAGG GCCATTCCCT 004320
004321 GCTTTATTTG ACATAATCTA AAAGCTCCTA TCATTTCCTC Cttttaaaac cttttattga aatacaatat acacacagaa 004400
004401 atgggcacat atcataagta catagctgga tgcattttca caagctcaca caccaggtaa tcaatacccc agaccaaaac 004480
004481 aaacaaacaa acaaacaaac aaacaagaag caggcctaac agcatccaga agccctcctc gtgtttcctt ccagttacta 004560
004561 cccctctctc ccaagggtga ctgctatccc aacttccagc agcatagcct gttttttgtc atttggcata tataaatgaa 004640
004641 aaat
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Predicted Small Protein

Name NONHSAT008569_smProtein_1367:1585
Length 73
Molecular weight 8398.7445
Aromaticity 0.138888888889
Instability index 64.4180555556
Isoelectric point 5.66766357422
Runs 13
Runs residual 0.0396390916464
Runs probability 0.0496718437895
Amino acid sequence MPSECIVISKECCIVYMQIFFSQIAEFVEISYHIRFVSNAFSSETIRRLASLLISKKNVI
NLYYDGTIYETM
Secondary structure LLLEEEEEELLLEEEEHHHHHHHHHHHHEEEEEEEEELLLLLHHHHHHHHHHHHLLLLEE
EEEELLEEEEEL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLL
LLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTiii
iiiiiiiiiiii