NONHSAT008627
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008627 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2269 nt |
Genomic location |
chr1-:197473881..197476148 |
Exon number |
2 |
Exons |
197473881..197475058,197475064..197476148 |
Genome context |
|
Sequence |
000001 TTTCTCAATT ATTATGCTAA GTATATTATG CTGCTAAGAT ACCCACATTT AAGGGGCAGA TTTAGAGACT CTTTTAGAAA 000080
000081 CTGAGTGTCT TTATCTTATT ATCAGATAAC CAGGCTGCAC AGGGCTCTCT ATAATGGAAT GATGCTCCTT TTCAATACTT 000160 000161 AGAGCCACTG TACTCAGTTT AGGAGTAACT GAAGGTGTGG ATGCATGTTA ATGGGAATCC AATTTTTACT ATTTTTATAT 000240 000241 TAATAACAGC GTTCTGTAGA AACAGTCTCT CCCTTCTAAA TAAAAACTAT GTGACTGCTG TTACTAGTGC TATTCTATGC 000320 000321 GAATATCCTA ATAATAGGAT TCAGGAATTC TAATGAATTG TTTCTTAATT AAGGTGAACA AGTAGACTCC TGATCAAGAG 000400 000401 GAGAACACTG TGAATGTCTC ATAATCAATA GACCTTCATT CTCTTGTAGA AAATGTGGAT TTTCAGGAAA AGACTGATTA 000480 000481 TTTTCATGAA TAAATTTTCT TATACAAATT CCATTTTGTT TGACATAAAA GACCCTGAAT CTTAAGATAT TTGTAAATCA 000560 000561 GAATATTTAA GAATGTAAAA TGAATCCCCA AATCTAGTTT CCTCCAAAGC ACTTCTTAAT GTAGGAAATA GTTTTTACAA 000640 000641 ACCCTATGTC AGTACTAATG TTCCTGGGTC AAACCCAGTA ATATTGTTAG TGTATGTTGT TACACCTTAT TTAAGAGGCA 000720 000721 GAGTGGTTTT GAGCAAGTCA GTTAACGTGA TTTGATGAAG AAATAAGGAA TTATATACAT TTAGACAGAA GAATATTTTA 000800 000801 TTTTGAAAAT AGGATTTCGT GCAATAATTT TTCTTGCATA ACTTAGTTCA TATAAATATG TACATCTGTT TTTCTGGCAG 000880 000881 ATGCCTTAAG GTCATGTTTT TCAGTATTTG AGTAAATCTG TATGTAGCAA TGTTCTCATT GATTTCAGAA AAAAAATATA 000960 000961 TTCTTTATAT TGTTGCCAGG AGAAATGTTT TTGTTTATTT AAAATTATTA TGGATATTGT GTTGTTGTAT CATAACTAAC 001040 001041 TGCCTCAGCA ACAATAAATA TGCAGTAAGA AAATCCTGTA CCTTAGATTG ACAATACTGT TACTTTAAAA GAAATATATA 001120 001121 CGGTACAAAT TGCTGATTCT ACATGTGTAC ATTTAACAGA TACTCAGTTC TGCACCACCT AAATCAAAAT GGCATTTGTA 001200 001201 TGCTGATGAT TACATATGTG GATTGTAGTA TCCTTTGTGA TGAATCTTTG ATAAGATTTA TAAAGGGCAT TGCCAATACT 001280 001281 TTTTGACTGT GTAAATTAAG TTAATTTTTT GTATGATGTA CAGTTTGTTT AACCTTAGAG CTTCTATAGA TTTCTACTTT 001360 001361 ATTATACTTG AATGAGGCAG AAAAGCACTG TGGAAAATCT GTAGCTCTGG ATGCAACATG CAGACATACC AAAAAAATAA 001440 001441 TAATAAAGCA AGGTACTGAA GAGCAATGTT AACAGAATGC TTTATATCCA GAATGCTATG TTTTTTTCAA GCCACATTTT 001520 001521 AGTTGAATGA AGTAAAGTTA TTCAATCTTT TATTTTAAAA TATTGGAAAG TCACAAATGA TTACCTCTTT GATATGATGA 001600 001601 ACCTATAAGT CTATTCATCT CTGTTATTTC ATTTCTCAAA TGTGAGCCTT GTTGAGGTCC ATTATCAAAT CTACACTTTG 001680 001681 GTTGATTATA TGATGTTTAG GACAAGGCAG AATTTAAAAC CTGCATGTTT AGTGCATCAC ATGTCAAGTC ACCATCCTTC 001760 001761 TGACAGTGTA ACTTCCATAA CGTTATTTTG AGAGCCATTT AATAATCATA TTTGAAAAAG TGGATTTCTT GAGTCTGTTG 001840 001841 TAGTTTAGTA CTTACAGCAG TGCCTAAAAC AGCAACTAAT ATGAACTGCC TGAGTCCTAC AACATAAATG CATAAAGCTT 001920 001921 TTTTATGTAA AAGCCACAGG AGGGGTTCAA AATTGAACTT TTCCAAAGTT TATTTCTCTT GCGTTAGATG AAAAACTATT 002000 002001 TAAAAGGACT GAAAACCCTG AGCTTTTTGC TCGTCTTGGT AGCAGATATC TGTAAAAACC TACCCAGAAT TGTGATTTTA 002080 002081 CTTCATTGTT CTTGCATCCT TGAGGCTACA GTATAAATCA TCTCCAAACT TGACTACTAT TGGGAAGATG TGTATAAAAG 002160 002161 CATCGCTTTG GGAATTTTTT AAAAAATATG CAAAAATAAA TATTGAATAA AATCTACATT ACCATAAAAC ACCCAAAAAT 002240 002241 GCAGTTCTAA AATAAAATTG GTCACAATT |
Predicted Small Protein
Name | NONHSAT008627_smProtein_929:1090 |
Length | 54 |
Molecular weight | 6281.6097 |
Aromaticity | 0.132075471698 |
Instability index | 53.5811320755 |
Isoelectric point | 9.33111572266 |
Runs | 6 |
Runs residual | 0.0470547630005 |
Runs probability | 0.0411440852617 |
Amino acid sequence | MFSLISEKKYILYIVARRNVFVYLKLLWILCCCIITNCLSNNKYAVRKSCTLD |
Secondary structure | LLLLLLLLEEEEEEHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooooooooo |