NONHSAT008665
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008665 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1906 nt |
Genomic location |
chr1+:198867859..198875694 |
Exon number |
2 |
Exons |
198867859..198869739,198875670..198875694 |
Genome context |
|
Sequence |
000001 GATTTATTAG AAATTCAAGT AAGTTTTGCT ATACGAATAA TACACTCAGG CAATTCAATA TATATTCTTG CCTATGTTGA 000080
000081 ATGATGGACG GTTACATTTT ACTGTGTATA TATTTTGATG ATTATATTTC TTCTCAAACA GTCCTAACCA GTTTCTGAGA 000160 000161 AAGTATTTTC TTTGCCTAAA TATATGCAAA ACTATAATTA AGCCAACAGC ACTTATAGac aagctgaatg gcttaggaca 000240 000241 gttgattttt tgtgcatcat tttcttcatc tgaatatgag agttgtatat acagtttcta tactttctac cagctctgag 000320 000321 attctgttaa ttctaATGAA AAATAAGAAT AAAGACAAAT TATACATTGA AATTCTCAAG ATCATAGTGA ATATTATGCA 000400 000401 AGGTAGACAG GTACCTACAT TTATCATTTT GTTGGTGATC CTGCTTCTAT CAAAATTCAT GCCACAAATT ACTTCATCTA 000480 000481 CAAATATTCC TGACACCCAT AGAGCACAAC ACATTAAAAA ATGGACTAGT GGACTGGGGA GGCCCTTCTG AGATGCACTG 000560 000561 TCTCCTTTCT AAACATACTC TATTTTCTGG GGACATCCAG CATGGAACAG TAGTCAGAGG CCAAGAACTA CAGTAAAAAA 000640 000641 AGGGGGTGGG AAAAGGGGAA TGAGAGGAAG GAAAGTAAAA TATAGAATTG TCAAAGAGGT AAAATCAAGT GGAAAGTGTG 000720 000721 GGGACACAGG AATGGGGCGG GGAATAGAAA CCAACTGGGA AATGGATTCA GCGAGAACTA CCTACAGCAC ATCTTCAAAA 000800 000801 CTGGGAGCCT GATTCACTGT CAGACGCAGA AGTGTCTTCT TCCCAGACTC TGAGCTCCAG TAGCCACATC TTTAAATTGC 000880 000881 CTGACTCCAA CAGCTGATTT GGTTGCCACC ACATAAATAG AAATTATAGC TTTCAACCCT TCATTTTATC TCTCTTACCT 000960 000961 ATAATCCTCT AGTTCCAGTC TGTCTGACCA CTTGACAAAG GTTTCTTCGT TTTTGTTTTG TTTTGTTTCA ACATTAGTGC 001040 001041 AGCATTGGGG GAACACTTAA ATACGTTTTA CACATAGAGA ACAGTAGACA GCCCTGGAAA CCCTAGACGA GAAAAGATAT 001120 001121 ATCCTGCTGG GAACATAAAA TGGCGCACAG GACACACACT AATGATTCTT GTAATTGAGA TTGTCATGTG TCTTATTAAA 001200 001201 AGCCATCATT TACCTGGAGG TCTTTCTTGA AAAAAAATGC AAAGATGCTT TACAGATTTT ACTTAAGAAT GTTTCTCAAA 001280 001281 GCCTTACTGA TCTATTTTCA TAGGTATGTT GTTTGGTTAG GTCCTTCAAA GGGCTTCAAG GTTTACTTTT ATATTTAAAA 001360 001361 AGAGTGAAGA TGAAAGCTAT TATTTGAATA CAGCATTGCA TTCAGTGGCA CCAAGATGCT TATTACAAGT GCCCCGATGA 001440 001441 GACAGTCGAA GCGTCTCATG GAAGCCAGTC TCCTCTAATG TGTATTTTGG TGCCCTGTCT GCTGGTTCGC CTAAGTGATG 001520 001521 TGGCATACAT TTGATGAAAG GACAGTAAAT GACATCAATT ATAAAAGACA TCTACTAATG AGAGGAAGAA GAGGAAGAGA 001600 001601 GAGAAATTGA AAAAAAGAAT AAGAAATTCT CTGAAATGGA AACAGCAAAG CACTTTGATT GAACTAAAAG AAATGACGTA 001680 001681 CCTTAATCAT GCCCTAATTT TAGGGTACCA CCAACCAAGC TACTCACTCT TCTTTGGAAA GATGACGTGT TTCTTCAACT 001760 001761 TCTGTACAAC TGTCATTGAA GATTTAAATC AATCTCCCTT CAGTTTCCAT CATTGATTGT TGGTAATTTT GCCAGGATCT 001840 001841 CTGTACAAAA CAAAACAAAA AGATATTATG TGAAACTCAG GCTGGTAGGA ATAAAATCTC TCCTCC |
Predicted Small Protein
Name | NONHSAT008665_smProtein_275:550 |
Length | 92 |
Molecular weight | 10450.5287 |
Aromaticity | 0.0659340659341 |
Instability index | 58.5120879121 |
Isoelectric point | 10.3501586914 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0875206757559 |
Amino acid sequence | MRVVYTVSILSTSSEILLILMKNKNKDKLYIEILKIIVNIMQGRQVPTFIILLVILLLSK FMPQITSSTNIPDTHRAQHIKKWTSGLGRPF |
Secondary structure | LEEEEEEEEELLLHHHHHHHHHLLLLLLLHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHH HLLLLLLLLLLLLLHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTT ooooooooooooooooooooooooooooooo |