NONHSAT008666
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008666 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2532 nt |
Genomic location |
chr1+:198878596..198881127 |
Exon number |
1 |
Exons |
198878596..198881127 |
Genome context |
|
Sequence |
000001 aaaaaaagaa atgaaaaaaG TGACTTTTTC CTCTTTCATT GGAAGGAAAC CTAGCATATA ACCAATGAGA CGACTCCCAG 000080
000081 TAAATATGCA GTGCCATCTT GATTGCTCTT GGTGACTATC CATACTTAAA AGAGACTGTT CCTTTCTGTA TTTTAATAAA 000160 000161 TCCTTAACTC TGTTTCTTAT ACTCTTCTAT CTCCCATACT TACTTTGCAA ATTCCCCTAT GATCAAGGAT TAGCACAACA 000240 000241 CTGAGGGCTG AAATGAAAAG AAGGATCTAA GAGAAAATAC CTTGAAAGAG ACGACAGAAC TCATCTTTGA TGGAACAAAG 000320 000321 AAAAGGTTAA AAAATTCTCT TTGGACACCT GAAAAAAATG TTTTCTTTTT TTTTTTTTCT TAGAGAATAA GCAGTTGGTG 000400 000401 GGAGTCACCA GATTATCAGT TATTTAACCT CTCAAGACTA GTGGCAGGTT TTTCCTTTCT TATTTAGCTT AAATGATTAT 000480 000481 TTAGGAGTTA GGTCCTCAGA AAGCAAGGAT TGTTTCCAAT TCTCTGTTAT CTTTGTACCA CTTAGCCAGA ATATCATGCA 000560 000561 TTTTAGGGGC TGTCAATAAA TACACAATGC ATTAAATTCT CTTTGCGTTT CCAGAGGAAG CCGGTAGGGA AAAGAAATAA 000640 000641 ATGAATGCCT GACTCAAGAG ACTGAGAGTC TATTTGAGTG AGGTGTGGGT CTAGTGGAAA TCTGCAGAAA AGAATCTTGT 000720 000721 AGAGGAAAAA TGACTCACAA GTATGTGAGG GGGAAGACTT TTTAATGTCA GTGTCCATAT TTCCTGATTA AAGTGAGGGT 000800 000801 ATTTGCATCA TGTTCTAGCA TTCTAAATAT AAAAGCAGCT AAGAATCTCC AAGAATCCCT TAAATTCTTA TTCAAGAACA 000880 000881 AAAAGAAATG AATAGTTTAG AACTCAAATA TTATAATAAA AAAGTATTCT CTAGCGCAAT AAAATCATTA CAATAAAACT 000960 000961 TGTTAGCTGA TTGGTTAGTG TTTTAGAGTG CTGTAAATGC ATAGTAACTG AAAAATGTTT CAGAATTTAA AAAACAGGTC 001040 001041 ATTGGTTAAT GATTCAGAAT AAAGAAATAT GTGAATGGTC AGGACTAACA ATAAAGTTAG ACTTTTTCTC CTAGAAATAG 001120 001121 TTTGTTAAAT GATATCTTTA AGGATGCTTT TAATAATATT TATGCTTTAA ACACACATAT TTAAAAACAA GACAACACAG 001200 001201 AACATATCAC TAATAGGATG TATTTTCCCC ATAGAATGTG CTTGTTAAAA TTGTTCAAAA ATGAATTATT GCATGTTTGT 001280 001281 GTTCAGCCTA AAAAATGCAA AACATTGCTA AAATCACTAC ACTAATCTTT TGAAAATAAG ATGCTAACAA TTTTTTATGA 001360 001361 AGATAACCAT TTAAGTCAAT ATTCAGAATT TTTCCTCATG CTAAAAATAC GTTATATATT TTAAATCAAA ACTCTTCTTG 001440 001441 AATATGCAGA AGAAAACTGA GAACAAAATG TGAAATTTAG TAGAAGGAAC AGTAGCTTTG GAGCTCTGGG ATCTGTCTTG 001520 001521 ACTTGTGACA CAAAGCATGT CACCCAGGCC TCTCTGAGAG ATGGGGTTAA TCCTAACAGA TGAGCTCCCT AGAGAGTAAC 001600 001601 TGTGAGAATA ATTACCATTA TAAATATGAT ATAATGAAGT CCTCTCAGAA AAGATGCTCT TTACATCTGG CAGAATCTTA 001680 001681 CTTGGTAAAG TCTTATACGA TAATTTGACC ttcactctaa cttaaaatac accagaatcc agccacttct caccacctcc 001760 001761 acagctgccg ccctaacaca aggcacctgc acctcttgcc tggattattg ccataccagc ctcagtggcc tccatgcttc 001840 001841 atccttacgc attatcacca cccctagcct aagctgttct ttgcacagaa accagagtga tccttttaat tctagagcca 001920 001921 aatcacatat gtccactggt cagatcccaa tggttttcca tcacactcag aataaaattt tgaatcttaa ccagagcctt 002000 002001 tcaagaccct acatgatttg ctcacctcac ttcttcactg cgtcccctgc cactgtctcc ttgttcactc taacgacctc 002080 002081 cctctttact ctttgctcat acatcctaat agcattcctg cctcagggca tttgcacttg ctattcccct agtctggtct 002160 002161 ggagagctct tctttggata ttcatatgac tcccaccatt ctttccttca aggctcagct caaataatat catatcatag 002240 002241 agacctttcc tgatagcctt atataaaatg tcataccaca tataatagtc tgttctcatc ctgctaatta agacataccc 002320 002321 aagactgggt gatttataaa gacaaaaaag gtttaacgga ctcacagttc cacatgtctg ggagacctca caatcatggc 002400 002401 agaagtaaaa agccacatct taacatggtg gcaggcaaga gagaaggaaa gccaagcaaa aggggaaacc ccttataaaa 002480 002481 ccgccagatc tcgtgagact tactgccaca agaacagtgt ggagaaagct gc |
Predicted Small Protein
Name | NONHSAT008666_smProtein_1928:2188 |
Length | 87 |
Molecular weight | 9745.4756 |
Aromaticity | 0.139534883721 |
Instability index | 59.7441860465 |
Isoelectric point | 8.88262939453 |
Runs | 16 |
Runs residual | 0.0464248524818 |
Runs probability | 0.043112965907 |
Amino acid sequence | MSTGQIPMVFHHTQNKILNLNQSLSRPYMICSPHFFTASPATVSLFTLTTSLFTLCSYIL IAFLPQGICTCYSPSLVWRALLWIFI |
Secondary structure | LLLLLLLEEEELLHHHHHHHLLLLLLLEEEELLLEEELLLLEEEHHHHHHHHHHHHHHHH HHHLLLLEEEELLLLHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTT TTTTTiiiiiiiiiiiiiiiiiiiii |