NONHSAT008666

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT008666

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2532 nt

Genomic location

chr1+:198878596..198881127

Exon number

1

Exons

198878596..198881127

Genome context

Sequence
000001 aaaaaaagaa atgaaaaaaG TGACTTTTTC CTCTTTCATT GGAAGGAAAC CTAGCATATA ACCAATGAGA CGACTCCCAG 000080
000081 TAAATATGCA GTGCCATCTT GATTGCTCTT GGTGACTATC CATACTTAAA AGAGACTGTT CCTTTCTGTA TTTTAATAAA 000160
000161 TCCTTAACTC TGTTTCTTAT ACTCTTCTAT CTCCCATACT TACTTTGCAA ATTCCCCTAT GATCAAGGAT TAGCACAACA 000240
000241 CTGAGGGCTG AAATGAAAAG AAGGATCTAA GAGAAAATAC CTTGAAAGAG ACGACAGAAC TCATCTTTGA TGGAACAAAG 000320
000321 AAAAGGTTAA AAAATTCTCT TTGGACACCT GAAAAAAATG TTTTCTTTTT TTTTTTTTCT TAGAGAATAA GCAGTTGGTG 000400
000401 GGAGTCACCA GATTATCAGT TATTTAACCT CTCAAGACTA GTGGCAGGTT TTTCCTTTCT TATTTAGCTT AAATGATTAT 000480
000481 TTAGGAGTTA GGTCCTCAGA AAGCAAGGAT TGTTTCCAAT TCTCTGTTAT CTTTGTACCA CTTAGCCAGA ATATCATGCA 000560
000561 TTTTAGGGGC TGTCAATAAA TACACAATGC ATTAAATTCT CTTTGCGTTT CCAGAGGAAG CCGGTAGGGA AAAGAAATAA 000640
000641 ATGAATGCCT GACTCAAGAG ACTGAGAGTC TATTTGAGTG AGGTGTGGGT CTAGTGGAAA TCTGCAGAAA AGAATCTTGT 000720
000721 AGAGGAAAAA TGACTCACAA GTATGTGAGG GGGAAGACTT TTTAATGTCA GTGTCCATAT TTCCTGATTA AAGTGAGGGT 000800
000801 ATTTGCATCA TGTTCTAGCA TTCTAAATAT AAAAGCAGCT AAGAATCTCC AAGAATCCCT TAAATTCTTA TTCAAGAACA 000880
000881 AAAAGAAATG AATAGTTTAG AACTCAAATA TTATAATAAA AAAGTATTCT CTAGCGCAAT AAAATCATTA CAATAAAACT 000960
000961 TGTTAGCTGA TTGGTTAGTG TTTTAGAGTG CTGTAAATGC ATAGTAACTG AAAAATGTTT CAGAATTTAA AAAACAGGTC 001040
001041 ATTGGTTAAT GATTCAGAAT AAAGAAATAT GTGAATGGTC AGGACTAACA ATAAAGTTAG ACTTTTTCTC CTAGAAATAG 001120
001121 TTTGTTAAAT GATATCTTTA AGGATGCTTT TAATAATATT TATGCTTTAA ACACACATAT TTAAAAACAA GACAACACAG 001200
001201 AACATATCAC TAATAGGATG TATTTTCCCC ATAGAATGTG CTTGTTAAAA TTGTTCAAAA ATGAATTATT GCATGTTTGT 001280
001281 GTTCAGCCTA AAAAATGCAA AACATTGCTA AAATCACTAC ACTAATCTTT TGAAAATAAG ATGCTAACAA TTTTTTATGA 001360
001361 AGATAACCAT TTAAGTCAAT ATTCAGAATT TTTCCTCATG CTAAAAATAC GTTATATATT TTAAATCAAA ACTCTTCTTG 001440
001441 AATATGCAGA AGAAAACTGA GAACAAAATG TGAAATTTAG TAGAAGGAAC AGTAGCTTTG GAGCTCTGGG ATCTGTCTTG 001520
001521 ACTTGTGACA CAAAGCATGT CACCCAGGCC TCTCTGAGAG ATGGGGTTAA TCCTAACAGA TGAGCTCCCT AGAGAGTAAC 001600
001601 TGTGAGAATA ATTACCATTA TAAATATGAT ATAATGAAGT CCTCTCAGAA AAGATGCTCT TTACATCTGG CAGAATCTTA 001680
001681 CTTGGTAAAG TCTTATACGA TAATTTGACC ttcactctaa cttaaaatac accagaatcc agccacttct caccacctcc 001760
001761 acagctgccg ccctaacaca aggcacctgc acctcttgcc tggattattg ccataccagc ctcagtggcc tccatgcttc 001840
001841 atccttacgc attatcacca cccctagcct aagctgttct ttgcacagaa accagagtga tccttttaat tctagagcca 001920
001921 aatcacatat gtccactggt cagatcccaa tggttttcca tcacactcag aataaaattt tgaatcttaa ccagagcctt 002000
002001 tcaagaccct acatgatttg ctcacctcac ttcttcactg cgtcccctgc cactgtctcc ttgttcactc taacgacctc 002080
002081 cctctttact ctttgctcat acatcctaat agcattcctg cctcagggca tttgcacttg ctattcccct agtctggtct 002160
002161 ggagagctct tctttggata ttcatatgac tcccaccatt ctttccttca aggctcagct caaataatat catatcatag 002240
002241 agacctttcc tgatagcctt atataaaatg tcataccaca tataatagtc tgttctcatc ctgctaatta agacataccc 002320
002321 aagactgggt gatttataaa gacaaaaaag gtttaacgga ctcacagttc cacatgtctg ggagacctca caatcatggc 002400
002401 agaagtaaaa agccacatct taacatggtg gcaggcaaga gagaaggaaa gccaagcaaa aggggaaacc ccttataaaa 002480
002481 ccgccagatc tcgtgagact tactgccaca agaacagtgt ggagaaagct gc
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Predicted Small Protein

Name NONHSAT008666_smProtein_1928:2188
Length 87
Molecular weight 9745.4756
Aromaticity 0.139534883721
Instability index 59.7441860465
Isoelectric point 8.88262939453
Runs 16
Runs residual 0.0464248524818
Runs probability 0.043112965907
Amino acid sequence MSTGQIPMVFHHTQNKILNLNQSLSRPYMICSPHFFTASPATVSLFTLTTSLFTLCSYIL
IAFLPQGICTCYSPSLVWRALLWIFI
Secondary structure LLLLLLLEEEELLHHHHHHHLLLLLLLEEEELLLEEELLLLEEEHHHHHHHHHHHHHHHH
HHHLLLLEEEELLLLHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH
HHHHHLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTT
TTTTTiiiiiiiiiiiiiiiiiiiii