NONHSAT008851
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008851 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1494 nt |
Genomic location |
chr1+:202780075..202781772 |
Exon number |
2 |
Exons |
202780075..202780498,202780703..202781772 |
Genome context |
|
Sequence |
000001 ACGCCCCAGA GGCCGGACCT GGGCAACCCC AGCCTGGAGG TGCCGGGGCC GGAGCTCCCA GAGGGCTGGG TGCGAGGCCT 000080
000081 AGGCGGGGTC AGGTTCGGGT TCCTAGGCCA TAGCGGAGCT GCAGCCCAGG CGGCCGGAGC GGAACCCAGC CCCGCTCCGA 000160 000161 GTGCCACGTC TCCAGGAACC CCCTCCTTAC TCTTGGACAA CACTCCGCCC CCGCCCGGGC CTCCGTCCCC CAAACCGCCC 000240 000241 TCATTTGTGC AGCGCCAGAT CCTTCGGACA CATCCCTAGG TGTCTCCATC CTCATTCGGT CCATCCAACT CCCAGACCTC 000320 000321 ACGTCAACCG GCTGCACCCC ACTTTCCAGC CTGCGCCCCA GATCTGCAGC CTTCGCCCCT AGATACACCC GCCTGGTGAT 000400 000401 GAGGCGCTCC TCGCGTTCCT TCCGGGCTCC AGGTGTCCGT GAGCCTCCCT TCCGCCCTGG CCTCCGGTCT CTGCCTTGCT 000480 000481 CGTGCTTCTA CCACCACCCT TCCCCTCCCA ACCCGGTGGA TCCTCTCGTC TCCCCCAGTC TCCAGTGCAC CGGCTTTCCC 000560 000561 TCGTCCTCTG CGCAGTCCAT CTCAGCTCAT CTCTCCAATT CAATGCCATC ATCTCTCCTC ACCATCTCTC GGTGCCCTGG 000640 000641 AATGTTTGCT GTCAGATGTC CCCTGTGAAA CCCACAAACG CTTGCGATTT GGCCTCCTtg ttttattttg tgtagtccta 000720 000721 caacgtcttg ttactacccc ctattacaac acttataact cagtatttgt cttttttccg cggtgtccct gcactctccc 000800 000801 catacatatt cctctcctgc cagattgtaa gcctctagag ggaagaagta atgtctctct ccttggcacc aggcacgtgg 000880 000881 cacacgctcc acaaatattt gttgaaAGGG AGGGTAAATG GCCTTGAGTT TCTGTGGCTA CCATTGGCTG AGGATGGAGC 000960 000961 TTTGGGCTGG ACAAAGAAGA ATCTGGTTGA CCACATGAAG CAGGAAGGAG GCTCAGAACG GTGTTGAGGG AGCCTCCACA 001040 001041 ATGGGTGGGC ACCACAGGTG AGATAAACCC ATCCTCCCCC ATTCCCTGCC CTGCTTAATT CCCGGGAACC AGCAACCCCT 001120 001121 CCTATGCTAT CGTCTACTGC TGAGCTGGTC CCTTATGGTG GACTTCTGTG CTCACTGTTC TGCTTTAGCC CCAGCTGTCG 001200 001201 GGGCTGCCCT TGGGGAACAG CTTACACCTT GACCAGGCGC TCATTTCTGG GTTTCTGTTC TTGGGAAGCT GGGTCTGGGT 001280 001281 CCTGGGAGCC ACCTGGTAAC TAATAAATAC CTCTTCCTCC TCCCATCTGC TCTTCCTCTC CTGTCCTGGA ATCCCTCTCT 001360 001361 GATGACTCAG CCCAACTGAG ATCCAGGGTA ACTGCACCCT CAGTCCTGGG CTTTGGTTTA CCTGGGTGTG GGGCTCAAAG 001440 001441 GGCTAGACCC TTGTGGGGGT CAGGCGCTGA CAAGTGGAAC ATTCCCACGG TGCT |
Predicted Small Protein
Name | NONHSAT008851_smProtein_398:667 |
Length | 90 |
Molecular weight | 9639.0582 |
Aromaticity | 0.0674157303371 |
Instability index | 107.74505618 |
Isoelectric point | 10.5850219727 |
Runs | 9 |
Runs residual | 0.0420797532496 |
Runs probability | 0.0493434611082 |
Amino acid sequence | MRRSSRSFRAPGVREPPFRPGLRSLPCSCFYHHPSPPNPVDPLVSPSLQCTGFPSSSAQS ISAHLSNSMPSSLLTISRCPGMFAVRCPL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHHHLLLLLLLEEEEEELLLLEEEEELL |
PRMN | - |
PiMo | - |