NONHSAT008890
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008890 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3977 nt |
Genomic location |
chr1+:203364731..203369257 |
Exon number |
2 |
Exons |
203364731..203367051,203367602..203369257 |
Genome context |
|
Sequence |
000001 ccagaaattt cttttatttt ttggtataaa tccaaatgtc catttggcat cattttcctt ttgtgcaaaa aaaccttcct 000080
000081 ttaacgcttc ttaaaattct gctgttgatt ttctctcatt gcttttggac attctcttta acactagttc ttaaaattca 000160 000161 attatgatgt gtcttgatat agttttcttc atgttttttt ttcctgcttg ggggttcatt gagcttctta gatctgcagg 000240 000241 tttatcgttt tgtcacattc agaaaagttt taatcattct ttctttaaat attttttctg ctccctcttc tggactctga 000320 000321 tggcacgtat attaggcaat ctgatgttgt tcctcagctt actgacgctt tgttggtttc ttttttccag acttcttctc 000400 000401 ggcgctgcat tttgaattgt ttctactagt gtatcttgaa gtttactaag cttttcttct ggagtgtcta agatgctgtt 000480 000481 catctcggcc agtatttttt catctgtaga atttaattca gtcttttttt atgttctcca tatctctcct taacatgctc 000560 000561 atacattctt ctacctttgt gaacacatgg agtatattat cactttttaa tattctgctc cgcataattc tagcatctgt 000640 000641 atcatttctg tttcagtcaa tttatttttc ttcttattct gggtcatatt ttctttttgt tttgttttgt tttgttttca 000720 000721 gaaagagtct cgctctgtcg cccaggttgg agtgcagtgg cacgatctcg gctcactgaa acctccgtct cccgggttca 000800 000801 agcgattctc ctacctcagc gttccgagta gctgggacta caggtgcgca ccgccacgcc cggctaattt ttgtattttt 000880 000881 ttgtagagac ggggttttgc catgttgccc aggcttgtct cgaattcctg agctcaagca gttcgcccgc tttggcccct 000960 000961 caaagtgttg ggactacagg tgtaagccac tgtgcccggc cctgggtcgt attttcctgc ctctttgtat gcctgttaag 001040 001041 gtttgattgg atgccagaTg tggctggaaa ggtcactcat gattagttac ttctactaat tctctgactt catcttctaa 001120 001121 tctccacccc tcccaggtct ctgattttgc caccctgaac ttcttgcaca cttcctcgtt catttgcaca tgctgtcccc 001200 001201 tttctctggg gcactcttcc ctaggcggtc cccatgggtt tctccctaac ttcatttggg tctgtgttca aatgtcacat 001280 001281 taccaaaaac attctatcac ctttccttgc tttatttgcc tttaaacatt tataaccact tgccagccat gttacttact 001360 001361 gattgtctat ttttacctca ccgcccacct ctgctaaaat gtaccatgac agcaTCACCG AGAACTACTG CCATCAGCTA 001440 001441 TATAATGAAA CTATTTTTAA GCAACAACAA CAGCAGCAGA GAAGAGGGAC CAACAGGGTC CAATGCATCA GAGGGGTCCA 001520 001521 AACTGGTAAG CACTGAAAAA TATCTATTGA ATCGGACAAT TAGGAGGACT AACCTCCTCA AGAGTAAGTT CCTGCAGTTT 001600 001601 GCTGGATAAA GGGCATCAGA GCGCCGTGGG TTGGGTTGAG GACATCTTCT CCCTTACAGC CTCCTGGTTC TTCTCTCAGA 001680 001681 AAAACTTCTC CTCCTTCCCA GCTCAATCCT ATTTATTTAT TTtaaaattt attgtgtata tttaaggtat acaacatgct 001760 001761 gttataggat acacatagtt agtaaaatat ttactatagc aaagcaaatg aacatctctg tcgtctccgc acagttaccc 001840 001841 atttttgttg cttttgtggc aagagcagct acaatctagt catttagtag gaatcccaag tacagtgcga ttttatgacc 001920 001921 tacaaccatc atggtgtaca ttagatctct ccacacacct gttacattgt atcctctgac ctacgtcttc ccatttcttc 002000 002001 ctcccattcc tccccagcct gcttccaccc cagtaactgc tgttttatta tctgcgtctg cacatttgat tttgttttta 002080 002081 gattccacat gtaagtgaca tcatgcacta tttttttttc ctgtctgacg catttcactc agcatagtgt cttccaggtt 002160 002161 aatccatgtt gtgccaaacg acaggacctt ctttttaaag gctgaataat attccattgt atacagatgc cacagttttt 002240 002241 taaatccatt cctccatcga cacttgggtg gttccatatc ttgactattg tgaagaatgc tgcgtgaaaa tagaagtgca 002320 002321 ggcctgagct tttgctgcga tctccaaaaa atcattgcca gttggatgtg gtggctcaca cttataatcc cagcactttg 002400 002401 ggatgtgagg tgggaggatc acttgagtcc agaggttcga gaccagcctg ggcaacataa ggagatgctg tctctaccaa 002480 002481 aaaggaaaaa gaaaatgaaa aaaatcattg ccaaggcaac tgtccaggaa cttttcctcc atgttttctt ctaggagttt 002560 002561 tatagtttca gatcttgcat ttaggttttt ttaaaaaaat ctattttgag ttgatttttg tgtatggtgt cagataaggg 002640 002641 tctagtgtca ttcttttgca tgtggaaatc cagttttcct ggcatcattt attgagaaga ccatccttgc cccattttgt 002720 002721 cctcttggag cccttgacaa aaatgagttg accatatatg tttgaaatta tttctaggct gtctcttctg ttccgttggc 002800 002801 ctatatgtct ttttttctgt cagtaccata ctgttttgtt tactatggtt ttgaaatata tAGTAATTTT TCACtatatt 002880 002881 tttaaatttt taacttttac tatattttaa aGTAATTGTT AAATCAAGAA ATGTAACGCT TCAGAATGCC TTCAGGATGG 002960 002961 CTAATCATTA ACAGTTTTCT TTCAGAAACT GTAAGAATTT AACACAAAAA GTAGTTTGGA AGCACACATT AAGGAGTTAC 003040 003041 CGGAAGAAGT TTCTTTTCCT AAATGTGCCT ATAGGACCAG ATACAAATCC AGCCCTGAAT AATAAATGGA AGATTTCTAt 003120 003121 ttgtatttct ttcttagaat tgttttggct atttggggtc ttttgtggtt ctgtatgaat tgtaggaatt ttttttttct 003200 003201 atttccatga agaatgtcat tgggattttg ataagaattg tgtcaagtct gtatattgct ttggataata gggacatttt 003280 003281 aacaatatta attcttctga tccatgagca cagaatatct ttccatttgt ttatatcttt tttagttttt ttattgatgc 003360 003361 tttatacttt tcaatgtaca gatctttcat ctccttgatt atttctccca agtattttat tttattttat tttattttat 003440 003441 tttatttttg atgatatcac aaataagatt gtgtttgtta tttctttttc agctaggtca ttatttgtgt ataaaaatgc 003520 003521 tactaattGG ggccaggcgt ggtggctcat gcctgtaatc ccagcacttt gggatgccga ggtgggtgga tcacctgagg 003600 003601 tcaggagttc aagaccggcc tggccaacat gctgaaacac catctctacc aaaaaataca aaaattagcc aggcgtggtg 003680 003681 gtgcatgcct gtaatctcag ctatttggga ggctgagaca agagaattgc atgaacccga gaagcggagg ttccagtgag 003760 003761 ctgagattgc accactgcac tccagcctgg acgacagagt aagactctgt ctcaaaaaac aaacaaacaa acaaaaaaGC 003840 003841 TATTGATTTT TAAAAAATGT TCGAAACACA TTTATTTTCT AAATCACCTG AAGTTGACTT ATATAAGATA ATTTCAACAA 003920 003921 ATAAAATGTT CAATGAAAAA TTGTGGTATG CAACGTACTT ATGTCATTAC AAGTTGA |
Predicted Small Protein
Name | NONHSAT008890_smProtein_530:778 |
Length | 83 |
Molecular weight | 9345.9619 |
Aromaticity | 0.182926829268 |
Instability index | 42.556097561 |
Isoelectric point | 9.30096435547 |
Runs | 12 |
Runs residual | 0.0104397634885 |
Runs probability | 0.0140581758229 |
Amino acid sequence | MFSISLLNMLIHSSTFVNTWSILSLFNILLRIILASVSFLFQSIYFSSYSGSYFLFVLFC FVFRKSLALSPRLECSGTISAH |
Secondary structure | LLLHHHHHHHHHHLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLHHHHHHHHH HHHHHHHLLLLLLLLLLEELLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT TTTTTiiiiiiiiiiiiiiiii |