NONHSAT008890

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT008890

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3977 nt

Genomic location

chr1+:203364731..203369257

Exon number

2

Exons

203364731..203367051,203367602..203369257

Genome context

Sequence
000001 ccagaaattt cttttatttt ttggtataaa tccaaatgtc catttggcat cattttcctt ttgtgcaaaa aaaccttcct 000080
000081 ttaacgcttc ttaaaattct gctgttgatt ttctctcatt gcttttggac attctcttta acactagttc ttaaaattca 000160
000161 attatgatgt gtcttgatat agttttcttc atgttttttt ttcctgcttg ggggttcatt gagcttctta gatctgcagg 000240
000241 tttatcgttt tgtcacattc agaaaagttt taatcattct ttctttaaat attttttctg ctccctcttc tggactctga 000320
000321 tggcacgtat attaggcaat ctgatgttgt tcctcagctt actgacgctt tgttggtttc ttttttccag acttcttctc 000400
000401 ggcgctgcat tttgaattgt ttctactagt gtatcttgaa gtttactaag cttttcttct ggagtgtcta agatgctgtt 000480
000481 catctcggcc agtatttttt catctgtaga atttaattca gtcttttttt atgttctcca tatctctcct taacatgctc 000560
000561 atacattctt ctacctttgt gaacacatgg agtatattat cactttttaa tattctgctc cgcataattc tagcatctgt 000640
000641 atcatttctg tttcagtcaa tttatttttc ttcttattct gggtcatatt ttctttttgt tttgttttgt tttgttttca 000720
000721 gaaagagtct cgctctgtcg cccaggttgg agtgcagtgg cacgatctcg gctcactgaa acctccgtct cccgggttca 000800
000801 agcgattctc ctacctcagc gttccgagta gctgggacta caggtgcgca ccgccacgcc cggctaattt ttgtattttt 000880
000881 ttgtagagac ggggttttgc catgttgccc aggcttgtct cgaattcctg agctcaagca gttcgcccgc tttggcccct 000960
000961 caaagtgttg ggactacagg tgtaagccac tgtgcccggc cctgggtcgt attttcctgc ctctttgtat gcctgttaag 001040
001041 gtttgattgg atgccagaTg tggctggaaa ggtcactcat gattagttac ttctactaat tctctgactt catcttctaa 001120
001121 tctccacccc tcccaggtct ctgattttgc caccctgaac ttcttgcaca cttcctcgtt catttgcaca tgctgtcccc 001200
001201 tttctctggg gcactcttcc ctaggcggtc cccatgggtt tctccctaac ttcatttggg tctgtgttca aatgtcacat 001280
001281 taccaaaaac attctatcac ctttccttgc tttatttgcc tttaaacatt tataaccact tgccagccat gttacttact 001360
001361 gattgtctat ttttacctca ccgcccacct ctgctaaaat gtaccatgac agcaTCACCG AGAACTACTG CCATCAGCTA 001440
001441 TATAATGAAA CTATTTTTAA GCAACAACAA CAGCAGCAGA GAAGAGGGAC CAACAGGGTC CAATGCATCA GAGGGGTCCA 001520
001521 AACTGGTAAG CACTGAAAAA TATCTATTGA ATCGGACAAT TAGGAGGACT AACCTCCTCA AGAGTAAGTT CCTGCAGTTT 001600
001601 GCTGGATAAA GGGCATCAGA GCGCCGTGGG TTGGGTTGAG GACATCTTCT CCCTTACAGC CTCCTGGTTC TTCTCTCAGA 001680
001681 AAAACTTCTC CTCCTTCCCA GCTCAATCCT ATTTATTTAT TTtaaaattt attgtgtata tttaaggtat acaacatgct 001760
001761 gttataggat acacatagtt agtaaaatat ttactatagc aaagcaaatg aacatctctg tcgtctccgc acagttaccc 001840
001841 atttttgttg cttttgtggc aagagcagct acaatctagt catttagtag gaatcccaag tacagtgcga ttttatgacc 001920
001921 tacaaccatc atggtgtaca ttagatctct ccacacacct gttacattgt atcctctgac ctacgtcttc ccatttcttc 002000
002001 ctcccattcc tccccagcct gcttccaccc cagtaactgc tgttttatta tctgcgtctg cacatttgat tttgttttta 002080
002081 gattccacat gtaagtgaca tcatgcacta tttttttttc ctgtctgacg catttcactc agcatagtgt cttccaggtt 002160
002161 aatccatgtt gtgccaaacg acaggacctt ctttttaaag gctgaataat attccattgt atacagatgc cacagttttt 002240
002241 taaatccatt cctccatcga cacttgggtg gttccatatc ttgactattg tgaagaatgc tgcgtgaaaa tagaagtgca 002320
002321 ggcctgagct tttgctgcga tctccaaaaa atcattgcca gttggatgtg gtggctcaca cttataatcc cagcactttg 002400
002401 ggatgtgagg tgggaggatc acttgagtcc agaggttcga gaccagcctg ggcaacataa ggagatgctg tctctaccaa 002480
002481 aaaggaaaaa gaaaatgaaa aaaatcattg ccaaggcaac tgtccaggaa cttttcctcc atgttttctt ctaggagttt 002560
002561 tatagtttca gatcttgcat ttaggttttt ttaaaaaaat ctattttgag ttgatttttg tgtatggtgt cagataaggg 002640
002641 tctagtgtca ttcttttgca tgtggaaatc cagttttcct ggcatcattt attgagaaga ccatccttgc cccattttgt 002720
002721 cctcttggag cccttgacaa aaatgagttg accatatatg tttgaaatta tttctaggct gtctcttctg ttccgttggc 002800
002801 ctatatgtct ttttttctgt cagtaccata ctgttttgtt tactatggtt ttgaaatata tAGTAATTTT TCACtatatt 002880
002881 tttaaatttt taacttttac tatattttaa aGTAATTGTT AAATCAAGAA ATGTAACGCT TCAGAATGCC TTCAGGATGG 002960
002961 CTAATCATTA ACAGTTTTCT TTCAGAAACT GTAAGAATTT AACACAAAAA GTAGTTTGGA AGCACACATT AAGGAGTTAC 003040
003041 CGGAAGAAGT TTCTTTTCCT AAATGTGCCT ATAGGACCAG ATACAAATCC AGCCCTGAAT AATAAATGGA AGATTTCTAt 003120
003121 ttgtatttct ttcttagaat tgttttggct atttggggtc ttttgtggtt ctgtatgaat tgtaggaatt ttttttttct 003200
003201 atttccatga agaatgtcat tgggattttg ataagaattg tgtcaagtct gtatattgct ttggataata gggacatttt 003280
003281 aacaatatta attcttctga tccatgagca cagaatatct ttccatttgt ttatatcttt tttagttttt ttattgatgc 003360
003361 tttatacttt tcaatgtaca gatctttcat ctccttgatt atttctccca agtattttat tttattttat tttattttat 003440
003441 tttatttttg atgatatcac aaataagatt gtgtttgtta tttctttttc agctaggtca ttatttgtgt ataaaaatgc 003520
003521 tactaattGG ggccaggcgt ggtggctcat gcctgtaatc ccagcacttt gggatgccga ggtgggtgga tcacctgagg 003600
003601 tcaggagttc aagaccggcc tggccaacat gctgaaacac catctctacc aaaaaataca aaaattagcc aggcgtggtg 003680
003681 gtgcatgcct gtaatctcag ctatttggga ggctgagaca agagaattgc atgaacccga gaagcggagg ttccagtgag 003760
003761 ctgagattgc accactgcac tccagcctgg acgacagagt aagactctgt ctcaaaaaac aaacaaacaa acaaaaaaGC 003840
003841 TATTGATTTT TAAAAAATGT TCGAAACACA TTTATTTTCT AAATCACCTG AAGTTGACTT ATATAAGATA ATTTCAACAA 003920
003921 ATAAAATGTT CAATGAAAAA TTGTGGTATG CAACGTACTT ATGTCATTAC AAGTTGA
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Predicted Small Protein

Name NONHSAT008890_smProtein_530:778
Length 83
Molecular weight 9345.9619
Aromaticity 0.182926829268
Instability index 42.556097561
Isoelectric point 9.30096435547
Runs 12
Runs residual 0.0104397634885
Runs probability 0.0140581758229
Amino acid sequence MFSISLLNMLIHSSTFVNTWSILSLFNILLRIILASVSFLFQSIYFSSYSGSYFLFVLFC
FVFRKSLALSPRLECSGTISAH
Secondary structure LLLHHHHHHHHHHLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLHHHHHHHHH
HHHHHHHLLLLLLLLLLEELLL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHH
HHHHHLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTT
TTTTTiiiiiiiiiiiiiiiii