NONHSAT008996
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008996 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2837 nt |
Genomic location |
chr1-:205405122..205414279 |
Exon number |
6 |
Exons |
205405122..205405614,205407820..205407846,205407861..205408713,205410364..205410387,205410957..205411790,205413674..205414279 |
Genome context |
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Sequence |
000001 GTTTTTAATT CTTTCTCCTG GTGTGTCTGC TCCACCGCCC GAGCTAATCC CCCAAATCCG GTCTCCTAAG CCGCAGCTGC 000080
000081 TTCCCTTCGC AGTGATGAAT GGCTCAGGGA GGGAAGGTGA ATTCATATTT TAATTACTGA GACGCGGTGC TAAGGGAGCC 000160 000161 GGGGAGGGGG CGGAGGGCTC AGCTTTGTTC TAGAGGCGTC GAGGGCACAC CCTCCTTACT GGGTCACTTC TCTTTTGCCC 000240 000241 TTTACCTGGG GTGGGGGGTG GCGGGGAGTT AAGGTGGGGG TTGCCTTGCT GAGAGTGCCT CTGCTCTCTG CCTTGGGAGA 000320 000321 TGAAGGGATG GGTCGTGGGG GGCGCAATAT CCCTCTTCTT GTTTATCAGA GAATTGCTGG CATGCCCCAG CACTTTTAAA 000400 000401 TAGCTTCCTA GCCTTCCACC CCCGCTGCCG CCCACTCTGA TGAAGGACAT TGCCAAAATT CGAGACACCT AGGAGTTTGT 000480 000481 GGTCTGCAAG CCTGGGGCCC TGGATTTCTC TTTATCTTAC TTTCTGGCCT GCTCTGAGTC TCCTCTTTCT CTTGGTTCTT 000560 000561 CCACATGTTC ATGCTGTCTC TGACTCACTG CCCCATTTTT GCCAGACATG CTGACTCAAG CTGGGCCTCC TGCCCATCCA 000640 000641 GCTGGCCAGT GGAAATGCAT TGCACCTATT AATTACAGCT ATTAGCTGTA TTACCGGGAC GCTGAGAGGC TGAGGGAGGG 000720 000721 GAGAATCTTG ACAGGACTTG GATCCACCGG GCACTGTGCT TGGTGTGGGC CTTGGCTCTG TCTGGAGAAA CACGAAGGAA 000800 000801 GTTTTTCCAA AAGGGCAAGG TTGTCCAGAC CAGTGGAACT GTCCAGAGAG CCACCATCTG GGCCATGCCA CATTCCTCAA 000880 000881 AGGCAGTGAA ACCACTTTGC ACATGTGCCT TGCTGGGGTA ACCCAGGACA TCCTATGCAA TCTCTATTGC TTGAGGGGCT 000960 000961 GGAGAAGGGA GGCGCCTCAT GCTTCCCTAT TCCAAACCCC TTCCGCATAG CCCTGTGCCT CCCTCCTTCC CCGCAGCACT 001040 001041 TGGGCTTCAC TCACCTGCTT GCCCCCATGT TCTTCCTGGA GAGAGGAGTG ATTCAGACCA GGCCCCGGCC TGACCTCCAC 001120 001121 GCAGGGCGCT TTCCTTCCTT TGTTCTCAGC TTCTCCGCTT GAGTGGCTTG AGTGCACTTC TGCTCCCTTT CCATAGGCCC 001200 001201 AGGGGCAGAG GAAGGGCAGA GAGGTGAACT GGAAAAATCT GCAGGTGGTT AAGGCTAGGG AAACCTAAAT GAGCCTTTGG 001280 001281 AGAAAGGGAT ACTCTTGCAG ACTGAAGCTG AGCTCCTGAA GCTCCCTCTC TTCCCCAGCC AGACTGCAAC AGATACCAGA 001360 001361 GCGGCCCCTG GCTCCTGCTG AGGGCCGGGT CAGCCAGAGG TGGGGGACAG CGTGTCCAGC TGGGGCAGAT CCAGCCTCAG 001440 001441 GAAACACTGA GGTTTCAAAG AGCTTTTCCT TGGAATGTGG GCCTCTCTGG GCAACTAGGG AGGGCAAAAG TCTTCCTCGG 001520 001521 CTGGTTCGCC CAAAACCTGG GAGAAGCAAG GGCACATTCT ATGCTGGCAG CCTCTGCCTG CCCAGCTCAT GCCCACACTC 001600 001601 AGGGGCCTTT CCTGGGCTTT GGGCAGATTG GGTGGGATTC AGGTTGTCTT TATGAGGCTT GAGCACAGCT TGAGTTCCTC 001680 001681 CTCCCATCCT CCAACCCCTT CCTTTGCCCC TACCTCCTAG CCCCCACCTT CTACAATCTG TTATTTCCTT TTATATCCAA 001760 001761 AGAATTATAA ACAGAAGTCC TTCCCTCAAG GGAACAGCAA GATTCAGCAA TAAAGGCCAG TGGGGTCACA AAGGACAGAA 001840 001841 GAAAAACTCC CTGGTTCTTT GTCCTCTTGG ATAGTAGAGG CCTTGGGTGA GGCAAAGAGA TGGGCAGAAA AAGTTACCTT 001920 001921 GATACAGAGG CCAGAGAGCC TCCTGGAGGG CATGTGTTTC CCTAGCGGTC ACCTGCGAGG CTGCAATCCT AGAAAAGTCA 002000 002001 CTTCTGTGGC AGAGGATGAA ATTGTATCCC CGGAGACTCA GAGATATTGG GTGTTATGTC CTGACCACAC AGGCTCACCA 002080 002081 GGAGGAAAGG TTAGGAAAGT GGAGAAAGTA CGTCCTGGGG AGCGGGTGGC CGAGGAGAGC TTTCCCCTTG TGCGCCTCTC 002160 002161 AGGCCTTGGC AGGGATTGCA GCTGCAGGGG TTTGGCAGTG AGCCCATCCA GAGAGCTTCC TCCCCCGGGA GAACTCCCTT 002240 002241 GGCTCCAGAG GGATACTAGA TATCTTGAGC CCTGGCTTTG GGAACATGGG TGGGGTCCCA AGGTCAAAGT GTTCTGAGTC 002320 002321 CTCTGCCTCC AAGCCGGCAG CCCCGCCGGG GTTATTGTGG CCAGTCCGCC TGGGTTCGCT TCTCTAAATT TCCATGGGAT 002400 002401 AGGAACTATA GATCATGAAG AAGAAACAGG AACCTTGACT CTTCACGGAG GAGCCCAGGA GGTCAGAACC ATCCACCAGG 002480 002481 AGGGTGAGCG GTAGCTGCCC AGGGCATCCC TGGAGGAAGT CGTCATACTG AGGAAGAAAT TGCCAAAGCC AAGAGCTCCC 002560 002561 AGACCTGGGC AGCTCAGGAG CTGACAGAAA CCACCCCCCA GGTCTGGAGT TCAAGGGTTT TCCTCGTGGG CTGCTGGTCT 002640 002641 GTCTCTTTCC CTTCTGGGGC AGCCGTCTCT CCTCCTTCAG CTCATTCCCG TGTTCCATCT GAGGGGCGGG AGGAAGGCAG 002720 002721 GAGGGGGAGA TGGCAGGACC CAGACAGATC CTCAGGACTC TCCCAGCCTC TGTTGCCATG GCAACACTGC TATTTTTATC 002800 002801 CCGTTGTTCA TGATGCTCAA AGCTCTAACT TTCTCTG |
Predicted Small Protein
Name | NONHSAT008996_smProtein_2015:2200 |
Length | 62 |
Molecular weight | 6946.0589 |
Aromaticity | 0.114754098361 |
Instability index | 41.3606557377 |
Isoelectric point | 10.2894897461 |
Runs | 12 |
Runs residual | 0.0439042773695 |
Runs probability | 0.0396425837602 |
Amino acid sequence | MKLYPRRLRDIGCYVLTTQAHQEERLGKWRKYVLGSGWPRRAFPLCASQALAGIAAAGVW Q |
Secondary structure | LLLLLLHHHHLLLEEELLLHHHHHHHLLHHHHEELLLLLLLLLHHHHHHHHHHHHHHLLL L |
PRMN | - |
PiMo | - |