NONHSAT009146
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009146 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2062 nt |
Genomic location |
chr1-:207974867..207996048 |
Exon number |
5 |
Exons |
207974867..207976007,207979350..207979442,207989274..207989425,207990584..207990759,207995549..207996048 |
Genome context |
|
Sequence |
000001 AGCTTTCTAA AATCTCTTTA GGGGTGTGCG TAGGCTCCTG TGTCTATGCC TGCTTTTGAC TGCCCAGTTG AAGCCTCTTC 000080
000081 CTATGCCTTT TAAAATTTCA CGCACTATAA GGAGGAAGAG CTCAGGGCTC CCAAAACTTT TTATTTAGAG GGAAGAATGC 000160 000161 TAGGGAGATG GGTATGCAGA GGGTTGACCA AATTGGAAGA AAATATTTAT TCTGTAGTTT GGTGTTGGAA AAGGGAATTT 000240 000241 TCCAATCAGC CACACCTCAG TGTTGCGGCA AAATAATTCT TGGCTCCCCT GGAAACGCAT GGGCAAGGTA GGGCAGAGCT 000320 000321 GCTGCTGCTG ATACTGCCAC CACCCTGGGC TTCCTGCTGA CTCTGGGCTA CTCCCTGGGG ACAACAGATT TGCATTGACG 000400 000401 TCCGGGGCTG TCCAGAGGCC CTCAAGAGCC AGTTGTGAGC TGAGCCCAGT ATGGGAAAGA TCTACCTTCT GGAAGCTACT 000480 000481 ACTACGTGGT GCTTGGAAAG AGGACTCAGG AGAGTGCAGC TTGCTCTGTG AGTGGGTGAC AACCTCTTGG CGACTCAGGC 000560 000561 TCAGCTGAGG ATGGTGCCAG TGTGCCGGAG ACAGCCGTCA TACTGCCGGA TAGAGTGGCT CACTTGCATG TATTTGGAAC 000640 000641 AAAAAAAGGA GATGCCTGGC AGCCCCGCTC TCTGCAGTGC TGTTGAGCCA CCAATTTTTG TGGTTTTGTG ACCACAAGTG 000720 000721 CTGACTGATG CGACATGACC CCAGTCTTGT CAGTGAATCA TCACCAGGCT GCTTACTGGA AACTGGATGC AGCAAGGAAA 000800 000801 TAGGATTTAA CCGCTCTCTG CCTCCCAGGA GCCCTGAAAT CAGCATTCCC AGAGGAAAGA AGATGGCCAT CTGGGCTTGG 000880 000881 CTTCCGGCTC CCCCCATCTG GCTGGAACAC ACATCAGTCA CCCCTGTGTA ACCTCCTCTG TGCCTTTCCC ATGGAGCACT 000960 000961 GTGTCATATC ACAAGTAGAA CTACAAGAAG ATATTTCTCC TCAGGGCAGA GGCTGGGTCT TCCGATTGAA TCTCCCTTCT 001040 001041 TTCTTCATTG AGATCCTCTT CTTCTGGAAG CTGGTTTCAC ATGGTGGCTT AGATTTTTCC ATCTTTGTAT CTAGCACCAT 001120 001121 TTGAAATCAG TGTTTTAGGA GTAAGAATTG CAGCACAGCC AAGGGTGGAC TGCAGAGGAA CTGCTGCTCA TGGAACTGGC 001200 001201 TCCTCTCCTC TTGCCACTTG AGTCTGTTCG AGAAGTCCAG GGAAGAACTT GAAGAGCAAA ATACACTCTT GAGTTTGTTG 001280 001281 GGTTTTGGGA GAGGTGACAG TAGAGAAGGG GGTTGTGTTT AAAATAAACA CAGTGGCTTG AGCAGGGGCA GAGGTTGTGA 001360 001361 TGCTATTTCT GTTGACTCCT AGCAGCCATC ACCAGCATGA ATGTGTTCGT AGGGCCTTTG AGTGTGGCGA TTGTCATATT 001440 001441 CTGTTGGATA ACAATGTATT GGGTGTCGAT TGTCATGGGG CAGGGGAGAG GGCAGTACAC CTGGAGGACC ATTTTGTCCA 001520 001521 CATCGACACC ATCAGTCTGC TCTTAGAGGA TGCCCTGGAG TATTCGGCGT TGATTGCGGG GCACCCGAAA TCAGACTTGC 001600 001601 CACCTGGACT GTCGAGGTGC AGACCCTGGG AGCACCACTG GCCCATCTCT TACACAGGCT GACCGATTTC TCCTGGTGTT 001680 001681 CAGAGTCTGT TTTTGTCTAG CACCATTTGA AATCGGTTAT GATGTAGGGG GAAAAGCAGC AGCCTCGAAG CCTCATGCCA 001760 001761 ACTCTGGGCA GCAGCAGCCT GTGGTTTCCT GGAAGATGGA TGGGCAGAGA ATAGGGAAGG AAGATCATGC TTTTCCCTAC 001840 001841 TAACTTCTGT AACTGCATGT ATGATACATT ATTGCAGAGG TAAGAGATAG TTTAATGGAT TTTTAAAAAC AAATTACTAT 001920 001921 AATTTATCTG ATGTTCTCTA GTTGCATTTT GCTGAAATGT AGTGCTGTTC TAAATTCTGT AAATTGATTG CTGTTGAATT 002000 002001 ATCTTTCTGT TGAGAAGAGT CTATTCATGC ATCCTGACCT TAATAAATAC TATGTTCAGT TT |
Predicted Small Protein
Name | NONHSAT009146_smProtein_950:1123 |
Length | 58 |
Molecular weight | 6601.5607 |
Aromaticity | 0.157894736842 |
Instability index | 54.1228070175 |
Isoelectric point | 4.96673583984 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0499519126971 |
Amino acid sequence | MEHCVISQVELQEDISPQGRGWVFRLNLPSFFIEILFFWKLVSHGGLDFSIFVSSTI |
Secondary structure | LEEEEEEEEEEELLLLLLLLEEEEEELLLHHHHHHHHHHHHHHLLLLLEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooooooo |